Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/6c1c301d1bb0fd968260093a3a30f6/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/444c2d50e2d9eb6dca67130a12ef9c/aih-tih-sc-fa55c3-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/6c1c301d1bb0fd968260093a3a30f6/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/6e1837dc10a729be32e5c5c6a9fb5f/aih-tih-sc-fa55c3-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
SFI1--BPIFC
starfusion
arriba
KIAA1549--ZC3HAV1
starfusion
arriba
ELOVL5--CLIC5
starfusion
arriba
TMEM165--TBL1X
starfusion
arriba
GNE--MROH2B
starfusion
arriba
BACH1--GRIK1
starfusion
UBAP1--PTPRD
starfusion
arriba
BCL7A--LRRC43
starfusion
NOCT--NAA15
starfusion
N6AMT1--HUNK
starfusion
arriba
LRRC1--HCRTR2
starfusion
IQGAP1--BLM
starfusion
NDFIP1--SPRY4-AS1
starfusion
SH2D4A--AC087269.1
starfusion
arriba
TSEN2--PPARG
starfusion
arriba
SBNO1--AC117503.5
starfusion
arriba
HELZ--CCR10
starfusion
arriba
CU104787.1--KMT2C
starfusion
KDM4C--RCL1
starfusion
arriba
BTBD10--POTEB3
starfusion
arriba
LCORL--LINC02438
starfusion
arriba
COL9A3--TRHDE
starfusion
arriba
TLK2P1--AC110079.1
starfusion
GRK2--SSH3
starfusion
arriba
ZNF257--AC074135.1
starfusion
arriba
TPTE--AL356585.3
starfusion
arriba
TPCN2--ARID5B
starfusion
SKAP2--HNRNPA2B1
starfusion
GPR149--ARHGEF26-AS1
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
AC008443.2--BAGE2
starfusion
ZCCHC7--AL354977.2
starfusion
arriba
CD2AP--AL451166.1
arriba
BAGE2--BAGE2
arriba
PIP5K1A--AL031599.1
arriba
PIP5K1A--GOT2P2
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
ANKRD27--TDRD12
arriba
LRBA--LRBA
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba
CHIC2--HDAC9
arriba
CCDC169--SOHLH2
arriba
KIF13A--NFYA
arriba
AC092807.3--DDAH1
arriba
MED20--AL031767.2
arriba
MED20--LINC00581
arriba
PCDHA2--PCDHA13
arriba
PCDHA2--PCDHAC1
arriba
PCDHA2--PCDHAC2
arriba
ZCCHC7--RFX3-AS1
arriba
URB1--U6
arriba
URB1--N6AMT1
arriba
AKT1S1--AF279873.3
arriba
SNHG14--HTR4
arriba
AC092470.1--GRIN2B
arriba
AC135001.1--GRIN2B
arriba
PICK1--HORMAD2-AS1
arriba
PMS2P7--CCDC146
arriba
0%| | 0/63 [00:00<?, ?it/s]
Processing SFI1--BPIFC: 0%| | 0/63 [00:00<?, ?it/s]
Processing SFI1--BPIFC: 2%|▏ | 1/63 [00:00<00:06, 9.07it/s]
Processing KIAA1549--ZC3HAV1: 2%|▏ | 1/63 [00:00<00:06, 9.07it/s]
Processing KIAA1549--ZC3HAV1: 3%|▎ | 2/63 [00:00<00:06, 9.35it/s]
Processing ELOVL5--CLIC5: 3%|▎ | 2/63 [00:00<00:06, 9.35it/s]
Processing ELOVL5--CLIC5: 5%|▍ | 3/63 [00:00<00:06, 9.43it/s]
Processing TMEM165--TBL1X: 5%|▍ | 3/63 [00:00<00:06, 9.43it/s]
Processing TMEM165--TBL1X: 6%|▋ | 4/63 [00:00<00:06, 9.49it/s]
Processing GNE--MROH2B: 6%|▋ | 4/63 [00:00<00:06, 9.49it/s]
Processing GNE--MROH2B: 8%|▊ | 5/63 [00:00<00:06, 9.52it/s]
Processing BACH1--GRIK1: 8%|▊ | 5/63 [00:00<00:06, 9.52it/s]
Processing BACH1--GRIK1: 10%|▉ | 6/63 [00:00<00:05, 9.53it/s]
Processing UBAP1--PTPRD: 10%|▉ | 6/63 [00:00<00:05, 9.53it/s]
Processing UBAP1--PTPRD: 11%|█ | 7/63 [00:00<00:05, 9.55it/s]
Processing BCL7A--LRRC43: 11%|█ | 7/63 [00:00<00:05, 9.55it/s]
Processing BCL7A--LRRC43: 13%|█▎ | 8/63 [00:00<00:05, 9.57it/s]
Processing NOCT--NAA15: 13%|█▎ | 8/63 [00:00<00:05, 9.57it/s]
Processing NOCT--NAA15: 14%|█▍ | 9/63 [00:00<00:05, 9.56it/s]
Processing N6AMT1--HUNK: 14%|█▍ | 9/63 [00:00<00:05, 9.56it/s]
Processing N6AMT1--HUNK: 16%|█▌ | 10/63 [00:01<00:05, 9.56it/s]
Processing LRRC1--HCRTR2: 16%|█▌ | 10/63 [00:01<00:05, 9.56it/s]
Processing LRRC1--HCRTR2: 17%|█▋ | 11/63 [00:01<00:05, 9.54it/s]
Processing IQGAP1--BLM: 17%|█▋ | 11/63 [00:01<00:05, 9.54it/s]
Processing IQGAP1--BLM: 19%|█▉ | 12/63 [00:01<00:05, 9.56it/s]
Processing NDFIP1--SPRY4-AS1: 19%|█▉ | 12/63 [00:01<00:05, 9.56it/s]
Processing NDFIP1--SPRY4-AS1: 21%|██ | 13/63 [00:01<00:05, 9.54it/s]
Processing SH2D4A--AC087269.1: 21%|██ | 13/63 [00:01<00:05, 9.54it/s]
Processing SH2D4A--AC087269.1: 22%|██▏ | 14/63 [00:01<00:05, 9.54it/s]
Processing TSEN2--PPARG: 22%|██▏ | 14/63 [00:01<00:05, 9.54it/s]
Processing TSEN2--PPARG: 24%|██▍ | 15/63 [00:01<00:05, 9.54it/s]
Processing SBNO1--AC117503.5: 24%|██▍ | 15/63 [00:01<00:05, 9.54it/s]
Processing SBNO1--AC117503.5: 25%|██▌ | 16/63 [00:01<00:04, 9.53it/s]
Processing HELZ--CCR10: 25%|██▌ | 16/63 [00:01<00:04, 9.53it/s]
Processing HELZ--CCR10: 27%|██▋ | 17/63 [00:01<00:04, 9.54it/s]
Processing CU104787.1--KMT2C: 27%|██▋ | 17/63 [00:01<00:04, 9.54it/s]
Processing CU104787.1--KMT2C: 29%|██▊ | 18/63 [00:01<00:04, 9.54it/s]
Processing KDM4C--RCL1: 29%|██▊ | 18/63 [00:01<00:04, 9.54it/s]
Processing KDM4C--RCL1: 30%|███ | 19/63 [00:01<00:04, 9.56it/s]
Processing BTBD10--POTEB3: 30%|███ | 19/63 [00:01<00:04, 9.56it/s]
Processing BTBD10--POTEB3: 32%|███▏ | 20/63 [00:02<00:04, 9.57it/s]
Processing LCORL--LINC02438: 32%|███▏ | 20/63 [00:02<00:04, 9.57it/s]
Processing LCORL--LINC02438: 33%|███▎ | 21/63 [00:02<00:04, 9.54it/s]
Processing COL9A3--TRHDE: 33%|███▎ | 21/63 [00:02<00:04, 9.54it/s]
Processing COL9A3--TRHDE: 35%|███▍ | 22/63 [00:02<00:04, 9.55it/s]
Processing TLK2P1--AC110079.1: 35%|███▍ | 22/63 [00:02<00:04, 9.55it/s]
Processing TLK2P1--AC110079.1: 37%|███▋ | 23/63 [00:02<00:04, 9.54it/s]
Processing GRK2--SSH3: 37%|███▋ | 23/63 [00:02<00:04, 9.54it/s]
Processing GRK2--SSH3: 38%|███▊ | 24/63 [00:02<00:04, 9.54it/s]
Processing ZNF257--AC074135.1: 38%|███▊ | 24/63 [00:02<00:04, 9.54it/s]
Processing ZNF257--AC074135.1: 40%|███▉ | 25/63 [00:02<00:03, 9.55it/s]
Processing TPTE--AL356585.3: 40%|███▉ | 25/63 [00:02<00:03, 9.55it/s]
Processing TPTE--AL356585.3: 41%|████▏ | 26/63 [00:02<00:03, 9.56it/s]
Processing TPCN2--ARID5B: 41%|████▏ | 26/63 [00:02<00:03, 9.56it/s]
Processing TPCN2--ARID5B: 43%|████▎ | 27/63 [00:02<00:03, 9.55it/s]
Processing SKAP2--HNRNPA2B1: 43%|████▎ | 27/63 [00:02<00:03, 9.55it/s]
Processing SKAP2--HNRNPA2B1: 44%|████▍ | 28/63 [00:02<00:03, 9.54it/s]
Processing GPR149--ARHGEF26-AS1: 44%|████▍ | 28/63 [00:02<00:03, 9.54it/s]
Processing GPR149--ARHGEF26-AS1: 46%|████▌ | 29/63 [00:03<00:03, 9.53it/s]
Processing TLK2--AC240565.1: 46%|████▌ | 29/63 [00:03<00:03, 9.53it/s]
Processing TLK2--AC240565.1: 48%|████▊ | 30/63 [00:03<00:03, 9.54it/s]
Processing STX16--NPEPL1: 48%|████▊ | 30/63 [00:03<00:03, 9.54it/s]
Processing STX16--NPEPL1: 49%|████▉ | 31/63 [00:03<00:03, 9.55it/s]
Processing AC008443.2--BAGE2: 49%|████▉ | 31/63 [00:03<00:03, 9.55it/s]
Processing AC008443.2--BAGE2: 51%|█████ | 32/63 [00:03<00:03, 9.55it/s]
Processing ZCCHC7--AL354977.2: 51%|█████ | 32/63 [00:03<00:03, 9.55it/s]
Processing ZCCHC7--AL354977.2: 52%|█████▏ | 33/63 [00:03<00:03, 9.56it/s]
Processing CD2AP--AL451166.1: 52%|█████▏ | 33/63 [00:03<00:03, 9.56it/s]
Processing CD2AP--AL451166.1: 54%|█████▍ | 34/63 [00:03<00:03, 9.50it/s]
Processing BAGE2--BAGE2: 54%|█████▍ | 34/63 [00:03<00:03, 9.50it/s]
Processing BAGE2--BAGE2: 56%|█████▌ | 35/63 [00:03<00:02, 9.51it/s]
Processing PIP5K1A--AL031599.1: 56%|█████▌ | 35/63 [00:03<00:02, 9.51it/s]
Processing PIP5K1A--AL031599.1: 57%|█████▋ | 36/63 [00:03<00:02, 9.51it/s]
Processing PIP5K1A--GOT2P2: 57%|█████▋ | 36/63 [00:03<00:02, 9.51it/s]
Processing PIP5K1A--GOT2P2: 59%|█████▊ | 37/63 [00:03<00:02, 9.53it/s]
Processing TVP23C--CDRT4: 59%|█████▊ | 37/63 [00:03<00:02, 9.53it/s]
Processing TVP23C--CDRT4: 60%|██████ | 38/63 [00:03<00:02, 9.52it/s]
Processing PCDHA4--PCDHAC2: 60%|██████ | 38/63 [00:03<00:02, 9.52it/s]
Processing PCDHA4--PCDHAC2: 62%|██████▏ | 39/63 [00:04<00:02, 9.52it/s]
Processing PCDHA4--PCDHAC1: 62%|██████▏ | 39/63 [00:04<00:02, 9.52it/s]
Processing PCDHA4--PCDHAC1: 63%|██████▎ | 40/63 [00:04<00:02, 9.51it/s]
Processing PCDHA4--PCDHA13: 63%|██████▎ | 40/63 [00:04<00:02, 9.51it/s]
Processing PCDHA4--PCDHA13: 65%|██████▌ | 41/63 [00:04<00:02, 9.52it/s]
Processing ANKRD27--TDRD12: 65%|██████▌ | 41/63 [00:04<00:02, 9.52it/s]
Processing ANKRD27--TDRD12: 67%|██████▋ | 42/63 [00:04<00:02, 9.54it/s]
Processing LRBA--LRBA: 67%|██████▋ | 42/63 [00:04<00:02, 9.54it/s]
Processing LRBA--LRBA: 68%|██████▊ | 43/63 [00:04<00:02, 9.53it/s]
Processing ZNF528--ZNF610: 68%|██████▊ | 43/63 [00:04<00:02, 9.53it/s]
Processing ZNF528--ZNF610: 70%|██████▉ | 44/63 [00:04<00:01, 9.55it/s]
Processing ZNF528--ZNF880: 70%|██████▉ | 44/63 [00:04<00:01, 9.55it/s]
Processing ZNF528--ZNF880: 71%|███████▏ | 45/63 [00:04<00:01, 9.57it/s]
Processing CHIC2--HDAC9: 71%|███████▏ | 45/63 [00:04<00:01, 9.57it/s]
Processing CHIC2--HDAC9: 73%|███████▎ | 46/63 [00:04<00:01, 9.57it/s]
Processing CCDC169--SOHLH2: 73%|███████▎ | 46/63 [00:04<00:01, 9.57it/s]
Processing CCDC169--SOHLH2: 75%|███████▍ | 47/63 [00:04<00:01, 9.57it/s]
Processing KIF13A--NFYA: 75%|███████▍ | 47/63 [00:04<00:01, 9.57it/s]
Processing KIF13A--NFYA: 76%|███████▌ | 48/63 [00:05<00:01, 9.54it/s]
Processing AC092807.3--DDAH1: 76%|███████▌ | 48/63 [00:05<00:01, 9.54it/s]
Processing AC092807.3--DDAH1: 78%|███████▊ | 49/63 [00:05<00:01, 9.55it/s]
Processing MED20--AL031767.2: 78%|███████▊ | 49/63 [00:05<00:01, 9.55it/s]
Processing MED20--AL031767.2: 79%|███████▉ | 50/63 [00:05<00:01, 9.56it/s]
Processing MED20--LINC00581: 79%|███████▉ | 50/63 [00:05<00:01, 9.56it/s]
Processing MED20--LINC00581: 81%|████████ | 51/63 [00:05<00:01, 9.56it/s]
Processing PCDHA2--PCDHA13: 81%|████████ | 51/63 [00:05<00:01, 9.56it/s]
Processing PCDHA2--PCDHA13: 83%|████████▎ | 52/63 [00:05<00:01, 9.56it/s]
Processing PCDHA2--PCDHAC1: 83%|████████▎ | 52/63 [00:05<00:01, 9.56it/s]
Processing PCDHA2--PCDHAC1: 84%|████████▍ | 53/63 [00:05<00:01, 9.57it/s]
Processing PCDHA2--PCDHAC2: 84%|████████▍ | 53/63 [00:05<00:01, 9.57it/s]
Processing PCDHA2--PCDHAC2: 86%|████████▌ | 54/63 [00:05<00:00, 9.56it/s]
Processing ZCCHC7--RFX3-AS1: 86%|████████▌ | 54/63 [00:05<00:00, 9.56it/s]
Processing ZCCHC7--RFX3-AS1: 87%|████████▋ | 55/63 [00:05<00:00, 9.55it/s]
Processing URB1--U6: 87%|████████▋ | 55/63 [00:05<00:00, 9.55it/s]
Processing URB1--U6: 89%|████████▉ | 56/63 [00:05<00:00, 9.55it/s]
Processing URB1--N6AMT1: 89%|████████▉ | 56/63 [00:05<00:00, 9.55it/s]
Processing URB1--N6AMT1: 90%|█████████ | 57/63 [00:05<00:00, 9.54it/s]
Processing AKT1S1--AF279873.3: 90%|█████████ | 57/63 [00:05<00:00, 9.54it/s]
Processing AKT1S1--AF279873.3: 92%|█████████▏| 58/63 [00:06<00:00, 9.52it/s]
Processing SNHG14--HTR4: 92%|█████████▏| 58/63 [00:06<00:00, 9.52it/s]
Processing SNHG14--HTR4: 94%|█████████▎| 59/63 [00:06<00:00, 9.53it/s]
Processing AC092470.1--GRIN2B: 94%|█████████▎| 59/63 [00:06<00:00, 9.53it/s]
Processing AC092470.1--GRIN2B: 95%|█████████▌| 60/63 [00:06<00:00, 9.54it/s]
Processing AC135001.1--GRIN2B: 95%|█████████▌| 60/63 [00:06<00:00, 9.54it/s]
Processing AC135001.1--GRIN2B: 97%|█████████▋| 61/63 [00:06<00:00, 9.56it/s]
Processing PICK1--HORMAD2-AS1: 97%|█████████▋| 61/63 [00:06<00:00, 9.56it/s]
Processing PICK1--HORMAD2-AS1: 98%|█████████▊| 62/63 [00:06<00:00, 9.54it/s]
Processing PMS2P7--CCDC146: 98%|█████████▊| 62/63 [00:06<00:00, 9.54it/s]
Processing PMS2P7--CCDC146: 100%|██████████| 63/63 [00:06<00:00, 9.56it/s]
Processing PMS2P7--CCDC146: 100%|██████████| 63/63 [00:06<00:00, 9.54it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory