File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/7ce1b4e8785519dce669d27b063400/.command.out
Size
2.4 KB
Attempt
Sample sheet being processed by common lib? Yes
SampleSheet Settings: 
  FastqCompressionFormat = gzip
  NoLaneSplitting = FALSE
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.3.6

Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
shared-thread-linux-native-asio output is disabled
bcl-convert Version 4.4.6
Copyright (c) 2014-2025 Illumina, Inc.
Command Line: --tiles s_5 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
Conversion Begins.
Input BCL Information:
    Read Structure: Y151;I10;I10;Y151
    RunInfo.xml file lists: 8 lanes, 6272 tiles
    BCL file format: cbcl
    Positions file format: slocs
    Filter file format: filter
Conversion Information:
    Tile filtering: converting 784/6272 tiles
    Sample Count for Lane 1: 96
    Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count for Lane 2: 96
    Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count for Lane 3: 96
    Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count for Lane 4: 96
    Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count for Lane 5: 96
    Sample Count for Lane 6: 96
    Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count for Lane 7: 96
    Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Sample Count for Lane 8: 96
    Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
    Expected number of sample FASTQ files to be created: 192
# CPU hw threads available: 64
Parallel Tiles: 4. Threads Per Tile: 16
SW compressors: 64
SW decompressors: 32
SW FASTQ compression level: 1
Lane 5 Post-run Information:
    Total clusters: 3928620214
    Total Genomic Reads: 7857240428
    Total Genomic Input Gigabases 1186.44
    Minimum reads for a sample: 22866
    Maximum reads for a sample: 144608380
    Average reads per sample: 75461395.54
    Undetermined reads: 612946456
Conversion Complete.