File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e9434d3ea989d997ba800d1354c48b/.command.log
Size
2.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f27606-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/2312b130b9eea2aead7809c3f2f7b8/aih-tih-sc-f27606-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e9434d3ea989d997ba800d1354c48b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e9434d3ea989d997ba800d1354c48b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/94f8b94dd0887403bfe3e8a65b14cc/aih-tih-sc-f27606-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TMEM131--ANKRD36
starfusion
CCDC91--OVCH1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
HDLBP--KIF1A
starfusion
arriba
TVP23C--CDRT4
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/6 [00:00<?, ?it/s]
Processing TMEM131--ANKRD36:   0%|          | 0/6 [00:00<?, ?it/s]
Processing TMEM131--ANKRD36:  17%|█▋        | 1/6 [00:00<00:00,  9.26it/s]
Processing CCDC91--OVCH1:  17%|█▋        | 1/6 [00:00<00:00,  9.26it/s]   
Processing CCDC91--OVCH1:  33%|███▎      | 2/6 [00:00<00:00,  9.49it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 2/6 [00:00<00:00,  9.49it/s]
Processing TLK2P1--AC110079.1:  50%|█████     | 3/6 [00:00<00:00,  9.56it/s]
Processing HDLBP--KIF1A:  50%|█████     | 3/6 [00:00<00:00,  9.56it/s]      
Processing HDLBP--KIF1A:  67%|██████▋   | 4/6 [00:00<00:00,  9.59it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 4/6 [00:00<00:00,  9.59it/s]
Processing TVP23C--CDRT4:  83%|████████▎ | 5/6 [00:00<00:00,  9.61it/s]
Processing CRYZL2P--SEC16B:  83%|████████▎ | 5/6 [00:00<00:00,  9.61it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 6/6 [00:00<00:00,  9.62it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 6/6 [00:00<00:00,  9.57it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory