Done.
-parsing GTF file: /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.jazekgGvtR/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
11:16:06 : INFO : Done.
-parsing GTF file: /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam

[10000]   
[20000]   
[30000]   
[40000]   
[50000]   
[60000]   
[70000]   
[80000]   
[90000]   
[100000]   
[110000]   
[120000]   
[130000]   
[140000]   
[150000]   
[160000]   
[170000]   
[180000]   
[190000]   
[200000]   
[210000]   
[220000]   
[230000]   
[240000]   
[250000]   
[260000]   
[270000]   
[280000]   
[290000]   
[300000]   
[310000]   
[320000]   
[330000]   
[340000]   
[350000]   
[360000]   
[370000]   
[380000]   
[390000]   
[400000]   
[410000]   
[420000]   
[430000]   
[440000]   
[450000]   
[460000]   
[470000]   -done parsing /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 36,
          'exons hit < 2' => 1,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 6,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 17,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 12,
          'small anchor length' => 4,
          'num genes matched < 2' => 10,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 25,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 3,
          'per_id < 96' => 1294,
          ' ** passed ** ' => 2818,
          'low complexity anchor region' => 1,
          'excessive soft clipping' => 2538
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   -fusion SPANNING read extraction for scaff: AL049629.2--EHF

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   -fusion SPANNING read extraction for scaff: CRYZL2P--SEC16B

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: PCDHA5--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   -fusion SPANNING read extraction for scaff: PCDHA5--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   -fusion SPANNING read extraction for scaff: PCDHA5--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: PMS2P6--CCDC146

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   -fusion SPANNING read extraction for scaff: TLK2--FAM157A

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: YTHDC1--GABRA4
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 2593
        };
EM: Starting log likelihood: -3083.079259
EM: Round [1] log likelihood: -3081.627828
EM: Round [2] log likelihood: -3081.603690
EM: Round [3] log likelihood: -3081.592692
EM: Round [4] log likelihood: -3081.582159
EM: Round [5] log likelihood: -3081.571774
EM: Round [6] log likelihood: -3081.561528
EM: Round [7] log likelihood: -3081.551416
EM: Round [8] log likelihood: -3081.541437
EM: Round [9] log likelihood: -3081.531588
EM: Round [10] log likelihood: -3081.521867
EM: Round [11] log likelihood: -3081.512270
EM: Round [12] log likelihood: -3081.502796
EM: Round [13] log likelihood: -3081.493442
EM: Round [14] log likelihood: -3081.484207
EM: Round [15] log likelihood: -3081.475088
EM: Round [16] log likelihood: -3081.466082
EM: Round [17] log likelihood: -3081.457189
EM: Round [18] log likelihood: -3081.448405
EM: Round [19] log likelihood: -3081.439729
EM: Round [20] log likelihood: -3081.431160
EM: Round [21] log likelihood: -3081.422694
EM: Round [22] log likelihood: -3081.414331
EM: Round [23] log likelihood: -3081.406069
EM: Round [24] log likelihood: -3081.397905
EM: Round [25] log likelihood: -3081.389839
EM: Round [26] log likelihood: -3081.381869
EM: Round [27] log likelihood: -3081.373992
EM: Round [28] log likelihood: -3081.366208
EM: Round [29] log likelihood: -3081.358515
EM: Round [30] log likelihood: -3081.350912
EM: Round [31] log likelihood: -3081.343397
EM: Round [32] log likelihood: -3081.335968
EM: Round [33] log likelihood: -3081.328624
EM: Round [34] log likelihood: -3081.321365
EM: Round [35] log likelihood: -3081.314188
EM: Round [36] log likelihood: -3081.307093
EM: Round [37] log likelihood: -3081.300077
EM: Round [38] log likelihood: -3081.293141
EM: Round [39] log likelihood: -3081.286282
EM: Round [40] log likelihood: -3081.279499
EM: Round [41] log likelihood: -3081.272792
EM: Round [42] log likelihood: -3081.266159
EM: Round [43] log likelihood: -3081.259599
EM: Round [44] log likelihood: -3081.253110
EM: Round [45] log likelihood: -3081.246693
EM: Round [46] log likelihood: -3081.240346
EM: Round [47] log likelihood: -3081.234067
EM: Round [48] log likelihood: -3081.227857
EM: Round [49] log likelihood: -3081.221713
EM: Round [50] log likelihood: -3081.215635
EM: Round [51] log likelihood: -3081.209622
EM: Round [52] log likelihood: -3081.203674
EM: Round [53] log likelihood: -3081.197788
EM: Round [54] log likelihood: -3081.191964
EM: Round [55] log likelihood: -3081.186202
EM: Round [56] log likelihood: -3081.180501
EM: Round [57] log likelihood: -3081.174859
EM: Round [58] log likelihood: -3081.169276
EM: Round [59] log likelihood: -3081.163752
EM: Round [60] log likelihood: -3081.158284
EM: Round [61] log likelihood: -3081.152873
EM: Round [62] log likelihood: -3081.147518
EM: Round [63] log likelihood: -3081.142218
EM: Round [64] log likelihood: -3081.136972
EM: Round [65] log likelihood: -3081.131780
EM: Round [66] log likelihood: -3081.126640
EM: Round [67] log likelihood: -3081.121553
EM: Round [68] log likelihood: -3081.116517
EM: Round [69] log likelihood: -3081.111533
EM: Round [70] log likelihood: -3081.106598
EM: Round [71] log likelihood: -3081.101713
EM: Round [72] log likelihood: -3081.096876
EM: Round [73] log likelihood: -3081.092088
EM: Round [74] log likelihood: -3081.087348
EM: Round [75] log likelihood: -3081.082654
EM: Round [76] log likelihood: -3081.078007
EM: Round [77] log likelihood: -3081.073406
EM: Round [78] log likelihood: -3081.068851
EM: Round [79] log likelihood: -3081.064340
EM: Round [80] log likelihood: -3081.059873
EM: Round [81] log likelihood: -3081.055450
EM: Round [82] log likelihood: -3081.051070
EM: Round [83] log likelihood: -3081.046732
EM: Round [84] log likelihood: -3081.042437
EM: Round [85] log likelihood: -3081.038183
EM: Round [86] log likelihood: -3081.033970
EM: Round [87] log likelihood: -3081.029798
EM: Round [88] log likelihood: -3081.025665
EM: Round [89] log likelihood: -3081.021573
EM: Round [90] log likelihood: -3081.017519
EM: Round [91] log likelihood: -3081.013505
EM: Round [92] log likelihood: -3081.009528
EM: Round [93] log likelihood: -3081.005589
EM: Round [94] log likelihood: -3081.001688
EM: Round [95] log likelihood: -3080.997823
EM: Round [96] log likelihood: -3080.993995
EM: Round [97] log likelihood: -3080.990203
EM: Round [98] log likelihood: -3080.986446
EM: Round [99] log likelihood: -3080.982725
EM: Round [100] log likelihood: -3080.979038
EM: Round [101] log likelihood: -3080.975386
EM: Round [102] log likelihood: -3080.971768
EM: Round [103] log likelihood: -3080.968184
EM: Round [104] log likelihood: -3080.964633
EM: Round [105] log likelihood: -3080.961114
EM: Round [106] log likelihood: -3080.957628
EM: Round [107] log likelihood: -3080.954175
EM: Round [108] log likelihood: -3080.950753
EM: Round [109] log likelihood: -3080.947362
EM: Round [110] log likelihood: -3080.944003
EM: Round [111] log likelihood: -3080.940674
EM: Round [112] log likelihood: -3080.937376
EM: Round [113] log likelihood: -3080.934108
EM: Round [114] log likelihood: -3080.930870
EM: Round [115] log likelihood: -3080.927661
EM: Round [116] log likelihood: -3080.924481
EM: Round [117] log likelihood: -3080.921330
EM: Round [118] log likelihood: -3080.918207
EM: Round [119] log likelihood: -3080.915113
EM: Round [120] log likelihood: -3080.912046
EM: Round [121] log likelihood: -3080.909007
EM: Round [122] log likelihood: -3080.905995
EM: Round [123] log likelihood: -3080.903010
EM: Round [124] log likelihood: -3080.900052
EM: Round [125] log likelihood: -3080.897121
EM: Round [126] log likelihood: -3080.894215
EM: Round [127] log likelihood: -3080.891336
EM: Round [128] log likelihood: -3080.888482
EM: Round [129] log likelihood: -3080.885653
EM: Round [130] log likelihood: -3080.882849
EM: Round [131] log likelihood: -3080.880070
EM: Round [132] log likelihood: -3080.877316
EM: Round [133] log likelihood: -3080.874586
EM: Round [134] log likelihood: -3080.871880
EM: Round [135] log likelihood: -3080.869198
EM: Round [136] log likelihood: -3080.866539
EM: Round [137] log likelihood: -3080.863904
EM: Round [138] log likelihood: -3080.861291
EM: Round [139] log likelihood: -3080.858702
EM: Round [140] log likelihood: -3080.856135
EM: Round [141] log likelihood: -3080.853590
EM: Round [142] log likelihood: -3080.851068
EM: Round [143] log likelihood: -3080.848568
EM: Round [144] log likelihood: -3080.846089
EM: Round [145] log likelihood: -3080.843632
EM: Round [146] log likelihood: -3080.841196
EM: Round [147] log likelihood: -3080.838781
EM: Round [148] log likelihood: -3080.836387
EM: Round [149] log likelihood: -3080.834013
EM: Round [150] log likelihood: -3080.831660
EM: Round [151] log likelihood: -3080.829327
EM: Round [152] log likelihood: -3080.827015
EM: Round [153] log likelihood: -3080.824722
EM: Round [154] log likelihood: -3080.822449
EM: Round [155] log likelihood: -3080.820195
EM: Round [156] log likelihood: -3080.817960
EM: Round [157] log likelihood: -3080.815745
EM: Round [158] log likelihood: -3080.813548
EM: Round [159] log likelihood: -3080.811370
EM: Round [160] log likelihood: -3080.809211
EM: Round [161] log likelihood: -3080.807070
EM: Round [162] log likelihood: -3080.804947
EM: Round [163] log likelihood: -3080.802842
EM: Round [164] log likelihood: -3080.800755
EM: Round [165] log likelihood: -3080.798685
EM: Round [166] log likelihood: -3080.796633
EM: Round [167] log likelihood: -3080.794599
EM: Round [168] log likelihood: -3080.792581
EM: Round [169] log likelihood: -3080.790580
EM: Round [170] log likelihood: -3080.788597
EM: Round [171] log likelihood: -3080.786630
EM: Round [172] log likelihood: -3080.784679
EM: Round [173] log likelihood: -3080.782745
EM: Round [174] log likelihood: -3080.780827
EM: Round [175] log likelihood: -3080.778925
EM: Round [176] log likelihood: -3080.777039
EM: Round [177] log likelihood: -3080.775168
EM: Round [178] log likelihood: -3080.773313
EM: Round [179] log likelihood: -3080.771474
EM: Round [180] log likelihood: -3080.769650
EM: Round [181] log likelihood: -3080.767841
EM: Round [182] log likelihood: -3080.766047
EM: Round [183] log likelihood: -3080.764268
EM: Round [184] log likelihood: -3080.762504
EM: Round [185] log likelihood: -3080.760754
EM: Round [186] log likelihood: -3080.759019
EM: Round [187] log likelihood: -3080.757298
EM: Round [188] log likelihood: -3080.755591
EM: Round [189] log likelihood: -3080.753899
EM: Round [190] log likelihood: -3080.752220
EM: Round [191] log likelihood: -3080.750555
EM: Round [192] log likelihood: -3080.748904
EM: Round [193] log likelihood: -3080.747267
EM: Round [194] log likelihood: -3080.745643
EM: Round [195] log likelihood: -3080.744032
EM: Round [196] log likelihood: -3080.742434
EM: Round [197] log likelihood: -3080.740850
EM: Round [198] log likelihood: -3080.739278
EM: Round [199] log likelihood: -3080.737719
EM: Round [200] log likelihood: -3080.736173
EM: Round [201] log likelihood: -3080.734640
EM: Round [202] log likelihood: -3080.733119
EM: Round [203] log likelihood: -3080.731611
EM: Round [204] log likelihood: -3080.730114
EM: Round [205] log likelihood: -3080.728630
EM: Round [206] log likelihood: -3080.727158
EM: Round [207] log likelihood: -3080.725698
EM: Round [208] log likelihood: -3080.724250
EM: Round [209] log likelihood: -3080.722814
EM: Round [210] log likelihood: -3080.721389
EM: Round [211] log likelihood: -3080.719976
EM: Round [212] log likelihood: -3080.718574
EM: Round [213] log likelihood: -3080.717183
EM: Round [214] log likelihood: -3080.715804
EM: Round [215] log likelihood: -3080.714436
EM: Round [216] log likelihood: -3080.713079
EM: Round [217] log likelihood: -3080.711732
EM: Round [218] log likelihood: -3080.710397
EM: Round [219] log likelihood: -3080.709072
EM: Round [220] log likelihood: -3080.707758
EM: Round [221] log likelihood: -3080.706455
EM: Round [222] log likelihood: -3080.705162
EM: Round [223] log likelihood: -3080.703879
EM: Round [224] log likelihood: -3080.702607
EM: Round [225] log likelihood: -3080.701345
EM: Round [226] log likelihood: -3080.700093
EM: Round [227] log likelihood: -3080.698851
EM: Round [228] log likelihood: -3080.697619
EM: Round [229] log likelihood: -3080.696397
EM: Round [230] log likelihood: -3080.695184
EM: Round [231] log likelihood: -3080.693981
EM: Round [232] log likelihood: -3080.692788
EM: Round [233] log likelihood: -3080.691604
EM: Round [234] log likelihood: -3080.690430
EM: Round [235] log likelihood: -3080.689265
EM: Round [236] log likelihood: -3080.688110
EM: Round [237] log likelihood: -3080.686963
EM: Round [238] log likelihood: -3080.685826
EM: Round [239] log likelihood: -3080.684697
EM: Round [240] log likelihood: -3080.683578
EM: Round [241] log likelihood: -3080.682467
EM: Round [242] log likelihood: -3080.681366
EM: Round [243] log likelihood: -3080.680273
EM: Round [244] log likelihood: -3080.679188
EM: Round [245] log likelihood: -3080.678113
EM: Round [246] log likelihood: -3080.677045
EM: Round [247] log likelihood: -3080.675987
EM: Round [248] log likelihood: -3080.674936
EM: Round [249] log likelihood: -3080.673894
EM: Round [250] log likelihood: -3080.672860
EM: Round [251] log likelihood: -3080.671834
EM: Round [252] log likelihood: -3080.670816
EM: Round [253] log likelihood: -3080.669807
EM: Round [254] log likelihood: -3080.668805
EM: Round [255] log likelihood: -3080.667811
EM: Round [256] log likelihood: -3080.666825
EM: Round [257] log likelihood: -3080.665846
EM: Round [258] log likelihood: -3080.664876
EM: Round [259] log likelihood: -3080.663913
EM: Round [260] log likelihood: -3080.662957
EM: Round [261] log likelihood: -3080.662009
EM: Round [262] log likelihood: -3080.661069
EM: Round [263] log likelihood: -3080.660135
EM: Round [264] log likelihood: -3080.659209
EM: Round [265] log likelihood: -3080.658291
EM: Round [266] log likelihood: -3080.657379
EM: Round [267] log likelihood: -3080.656475
EM: Round [268] log likelihood: -3080.655578
EM: Round [269] log likelihood: -3080.654687
EM: Round [270] log likelihood: -3080.653804
EM: Round [271] log likelihood: -3080.652927
EM: Round [272] log likelihood: -3080.652058
EM: Round [273] log likelihood: -3080.651195
EM: Round [274] log likelihood: -3080.650339
EM: Round [275] log likelihood: -3080.649489
EM: Round [276] log likelihood: -3080.648646
EM: Round [277] log likelihood: -3080.647810
EM: Round [278] log likelihood: -3080.646980
EM: Round [279] log likelihood: -3080.646157
EM: Round [280] log likelihood: -3080.645340
EM: Round [281] log likelihood: -3080.644529
EM: Round [282] log likelihood: -3080.643725
EM: Round [283] log likelihood: -3080.642927
EM: Round [284] log likelihood: -3080.642135
EM: Round [285] log likelihood: -3080.641349
EM: Round [286] log likelihood: -3080.640570
EM: Round [287] log likelihood: -3080.639796
EM: Round [288] log likelihood: -3080.639028
EM: Round [289] log likelihood: -3080.638266
EM: Round [290] log likelihood: -3080.637511
EM: Round [291] log likelihood: -3080.636761
EM: Round [292] log likelihood: -3080.636016
EM: Round [293] log likelihood: -3080.635278
EM: Round [294] log likelihood: -3080.634545
EM: Round [295] log likelihood: -3080.633818
EM: Round [296] log likelihood: -3080.633097
EM: Round [297] log likelihood: -3080.632381
EM: Round [298] log likelihood: -3080.631670
EM: Round [299] log likelihood: -3080.630965
EM: Round [300] log likelihood: -3080.630266
EM: Round [301] log likelihood: -3080.629572
EM: Round [302] log likelihood: -3080.628883
EM: Round [303] log likelihood: -3080.628200
EM: Round [304] log likelihood: -3080.627521
EM: Round [305] log likelihood: -3080.626848
EM: Round [306] log likelihood: -3080.626180
EM: Round [307] log likelihood: -3080.625518
EM: Round [308] log likelihood: -3080.624860
EM: Round [309] log likelihood: -3080.624208
EM: Round [310] log likelihood: -3080.623560
EM: Round [311] log likelihood: -3080.622917
EM: Round [312] log likelihood: -3080.622280
EM: Round [313] log likelihood: -3080.621647
EM: Round [314] log likelihood: -3080.621019
EM: Round [315] log likelihood: -3080.620396
EM: Round [316] log likelihood: -3080.619778
EM: Round [317] log likelihood: -3080.619164
EM: Round [318] log likelihood: -3080.618555
EM: Round [319] log likelihood: -3080.617951
EM: Round [320] log likelihood: -3080.617351
EM: Round [321] log likelihood: -3080.616756
EM: Round [322] log likelihood: -3080.616166
EM: Round [323] log likelihood: -3080.615579
EM: Round [324] log likelihood: -3080.614998
EM: Round [325] log likelihood: -3080.614421
EM: Round [326] log likelihood: -3080.613848
EM: Round [327] log likelihood: -3080.613280
EM: Round [328] log likelihood: -3080.612716
EM: Round [329] log likelihood: -3080.612156
EM: Round [330] log likelihood: -3080.611601
EM: Round [331] log likelihood: -3080.611050
EM: Round [332] log likelihood: -3080.610503
EM: Round [333] log likelihood: -3080.609960
EM: Round [334] log likelihood: -3080.609421
EM: Round [335] log likelihood: -3080.608886
EM: Round [336] log likelihood: -3080.608356
EM: Round [337] log likelihood: -3080.607829
EM: Round [338] log likelihood: -3080.607307
EM: Round [339] log likelihood: -3080.606788
EM: Round [340] log likelihood: -3080.606274
EM: Round [341] log likelihood: -3080.605763
EM: Round [342] log likelihood: -3080.605256
EM: Round [343] log likelihood: -3080.604753
EM: Round [344] log likelihood: -3080.604254
EM: Round [345] log likelihood: -3080.603759
EM: Round [346] log likelihood: -3080.603267
EM: Round [347] log likelihood: -3080.602779
EM: Round [348] log likelihood: -3080.602295
EM: Round [349] log likelihood: -3080.601815
EM: Round [350] log likelihood: -3080.601338
EM: Round [351] log likelihood: -3080.600865
EM: Round [352] log likelihood: -3080.600395
EM: Round [353] log likelihood: -3080.599929
EM: Round [354] log likelihood: -3080.599466
EM: Round [355] log likelihood: -3080.599007
EM: Round [356] log likelihood: -3080.598552
EM: Round [357] log likelihood: -3080.598100
EM: Round [358] log likelihood: -3080.597651
EM: Round [359] log likelihood: -3080.597206
EM: Round [360] log likelihood: -3080.596764
EM: Round [361] log likelihood: -3080.596325
EM: Round [362] log likelihood: -3080.595890
EM: Round [363] log likelihood: -3080.595458
EM: Round [364] log likelihood: -3080.595029
EM: Round [365] log likelihood: -3080.594603
EM: Round [366] log likelihood: -3080.594181
EM: Round [367] log likelihood: -3080.593762
EM: Round [368] log likelihood: -3080.593346
EM: Round [369] log likelihood: -3080.592933
EM: Round [370] log likelihood: -3080.592523
EM: Round [371] log likelihood: -3080.592117
EM: Round [372] log likelihood: -3080.591713
EM: Round [373] log likelihood: -3080.591312
EM: Round [374] log likelihood: -3080.590915
EM: Round [375] log likelihood: -3080.590520
EM: Round [376] log likelihood: -3080.590129
EM: Round [377] log likelihood: -3080.589740
EM: Round [378] log likelihood: -3080.589355
EM: Round [379] log likelihood: -3080.588972
EM: Round [380] log likelihood: -3080.588592
EM: Round [381] log likelihood: -3080.588215
EM: Round [382] log likelihood: -3080.587841
EM: Round [383] log likelihood: -3080.587469
EM: Round [384] log likelihood: -3080.587101
EM: Round [385] log likelihood: -3080.586735
EM: Round [386] log likelihood: -3080.586372
EM: Round [387] log likelihood: -3080.586011
EM: Round [388] log likelihood: -3080.585654
EM: Round [389] log likelihood: -3080.585299
EM: Round [390] log likelihood: -3080.584946
EM: Round [391] log likelihood: -3080.584597
EM: Round [392] log likelihood: -3080.584250
EM: Round [393] log likelihood: -3080.583905
EM: Round [394] log likelihood: -3080.583563
EM: Round [395] log likelihood: -3080.583224
EM: Round [396] log likelihood: -3080.582887
EM: Round [397] log likelihood: -3080.582553
EM: Round [398] log likelihood: -3080.582221
EM: Round [399] log likelihood: -3080.581892
EM: Round [400] log likelihood: -3080.581565
EM: Round [401] log likelihood: -3080.581241
EM: Round [402] log likelihood: -3080.580919
EM: Round [403] log likelihood: -3080.580600
EM: Round [404] log likelihood: -3080.580282
EM: Round [405] log likelihood: -3080.579968
EM: Round [406] log likelihood: -3080.579655
EM: Round [407] log likelihood: -3080.579345
EM: Round [408] log likelihood: -3080.579038
EM: Round [409] log likelihood: -3080.578732
EM: Round [410] log likelihood: -3080.578429
EM: Round [411] log likelihood: -3080.578128
EM: Round [412] log likelihood: -3080.577830
EM: Round [413] log likelihood: -3080.577533
EM: Round [414] log likelihood: -3080.577239
EM: Round [415] log likelihood: -3080.576947
EM: Round [416] log likelihood: -3080.576657
EM: Round [417] log likelihood: -3080.576370
EM: Round [418] log likelihood: -3080.576084
EM: Round [419] log likelihood: -3080.575801
EM: Round [420] log likelihood: -3080.575520
EM: Round [421] log likelihood: -3080.575241
EM: Round [422] log likelihood: -3080.574963
EM: Round [423] log likelihood: -3080.574688
EM: Round [424] log likelihood: -3080.574416
EM: Round [425] log likelihood: -3080.574145
EM: Round [426] log likelihood: -3080.573876
EM: Round [427] log likelihood: -3080.573609
EM: Round [428] log likelihood: -3080.573344
EM: Round [429] log likelihood: -3080.573081
EM: Round [430] log likelihood: -3080.572820
EM: Round [431] log likelihood: -3080.572561
EM: Round [432] log likelihood: -3080.572304
EM: Round [433] log likelihood: -3080.572049
EM: Round [434] log likelihood: -3080.571796
EM: Round [435] log likelihood: -3080.571544
EM: Round [436] log likelihood: -3080.571295
EM: Round [437] log likelihood: -3080.571047
EM: Round [438] log likelihood: -3080.570801
EM: Round [439] log likelihood: -3080.570557
EM: Round [440] log likelihood: -3080.570315
EM: Round [441] log likelihood: -3080.570075
EM: Round [442] log likelihood: -3080.569836
EM: Round [443] log likelihood: -3080.569599
EM: Round [444] log likelihood: -3080.569364
EM: Round [445] log likelihood: -3080.569131
EM: Round [446] log likelihood: -3080.568900
EM: Round [447] log likelihood: -3080.568670
EM: Round [448] log likelihood: -3080.568442
EM: Round [449] log likelihood: -3080.568215
EM: Round [450] log likelihood: -3080.567990
EM: Round [451] log likelihood: -3080.567767
EM: Round [452] log likelihood: -3080.567546
EM: Round [453] log likelihood: -3080.567326
EM: Round [454] log likelihood: -3080.567108
EM: Round [455] log likelihood: -3080.566891
EM: Round [456] log likelihood: -3080.566677
EM: Round [457] log likelihood: -3080.566463
EM: Round [458] log likelihood: -3080.566251
EM: Round [459] log likelihood: -3080.566041
EM: Round [460] log likelihood: -3080.565833
EM: Round [461] log likelihood: -3080.565626
EM: Round [462] log likelihood: -3080.565420
EM: Round [463] log likelihood: -3080.565216
EM: Round [464] log likelihood: -3080.565014
EM: Round [465] log likelihood: -3080.564813
EM: Round [466] log likelihood: -3080.564613
EM: Round [467] log likelihood: -3080.564415
EM: Round [468] log likelihood: -3080.564218
EM: Round [469] log likelihood: -3080.564023
EM: Round [470] log likelihood: -3080.563830
EM: Round [471] log likelihood: -3080.563638
EM: Round [472] log likelihood: -3080.563447
EM: Round [473] log likelihood: -3080.563257
EM: Round [474] log likelihood: -3080.563069
EM: Round [475] log likelihood: -3080.562883
EM: Round [476] log likelihood: -3080.562698
EM: Round [477] log likelihood: -3080.562514
EM: Round [478] log likelihood: -3080.562331
EM: Round [479] log likelihood: -3080.562150
EM: Round [480] log likelihood: -3080.561970
EM: Round [481] log likelihood: -3080.561792
EM: Round [482] log likelihood: -3080.561615
EM: Round [483] log likelihood: -3080.561439
EM: Round [484] log likelihood: -3080.561264
EM: Round [485] log likelihood: -3080.561091
EM: Round [486] log likelihood: -3080.560919
EM: Round [487] log likelihood: -3080.560749
EM: Round [488] log likelihood: -3080.560579
EM: Round [489] log likelihood: -3080.560411
EM: Round [490] log likelihood: -3080.560244
EM: Round [491] log likelihood: -3080.560078
EM: Round [492] log likelihood: -3080.559914
EM: Round [493] log likelihood: -3080.559751
EM: Round [494] log likelihood: -3080.559589
EM: Round [495] log likelihood: -3080.559428
EM: Round [496] log likelihood: -3080.559268
EM: Round [497] log likelihood: -3080.559110
EM: Round [498] log likelihood: -3080.558952
EM: Round [499] log likelihood: -3080.558796
EM: Round [500] log likelihood: -3080.558641
EM: Round [501] log likelihood: -3080.558487
EM: Round [502] log likelihood: -3080.558335
EM: Round [503] log likelihood: -3080.558183
EM: Round [504] log likelihood: -3080.558033
EM: Round [505] log likelihood: -3080.557883
EM: Round [506] log likelihood: -3080.557735
EM: Round [507] log likelihood: -3080.557588
EM: Round [508] log likelihood: -3080.557442
EM: Round [509] log likelihood: -3080.557297
EM: Round [510] log likelihood: -3080.557153
EM: Round [511] log likelihood: -3080.557010
EM: Round [512] log likelihood: -3080.556868
EM: Round [513] log likelihood: -3080.556727
EM: Round [514] log likelihood: -3080.556588
EM: Round [515] log likelihood: -3080.556449
EM: Round [516] log likelihood: -3080.556311
EM: Round [517] log likelihood: -3080.556175
EM: Round [518] log likelihood: -3080.556039
EM: Round [519] log likelihood: -3080.555904
EM: Round [520] log likelihood: -3080.555771
EM: Round [521] log likelihood: -3080.555638
EM: Round [522] log likelihood: -3080.555506
EM: Round [523] log likelihood: -3080.555376
EM: Round [524] log likelihood: -3080.555246
EM: Round [525] log likelihood: -3080.555117
EM: Round [526] log likelihood: -3080.554989
EM: Round [527] log likelihood: -3080.554862
EM: Round [528] log likelihood: -3080.554736
EM: Round [529] log likelihood: -3080.554611
EM: Round [530] log likelihood: -3080.554487
EM: Round [531] log likelihood: -3080.554364
EM: Round [532] log likelihood: -3080.554242
EM: Round [533] log likelihood: -3080.554120
EM: Round [534] log likelihood: -3080.554000
EM: Round [535] log likelihood: -3080.553880
EM: Round [536] log likelihood: -3080.553761
EM: Round [537] log likelihood: -3080.553643
EM: Round [538] log likelihood: -3080.553526
EM: Round [539] log likelihood: -3080.553410
EM: Round [540] log likelihood: -3080.553295
EM: Round [541] log likelihood: -3080.553180
EM: Round [542] log likelihood: -3080.553067
EM: Round [543] log likelihood: -3080.552954
EM: Round [544] log likelihood: -3080.552842
EM: Round [545] log likelihood: -3080.552731
EM: Round [546] log likelihood: -3080.552621
EM: Round [547] log likelihood: -3080.552511
EM: Round [548] log likelihood: -3080.552403
EM: Round [549] log likelihood: -3080.552295
EM: Round [550] log likelihood: -3080.552188
EM: Round [551] log likelihood: -3080.552081
EM: Round [552] log likelihood: -3080.551976
EM: Round [553] log likelihood: -3080.551871
EM: Round [554] log likelihood: -3080.551767
EM: Round [555] log likelihood: -3080.551664
EM: Round [556] log likelihood: -3080.551561
EM: Round [557] log likelihood: -3080.551460
EM: Round [558] log likelihood: -3080.551359
EM: Round [559] log likelihood: -3080.551258
EM: Round [560] log likelihood: -3080.551159
EM: Stopping iterations at round 560 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.jazekgGvtR/fi_workdir/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -2545.800685
EM: Round [1] log likelihood: -2545.459979
EM: Round [2] log likelihood: -2545.453102
EM: Round [3] log likelihood: -2545.446548
EM: Round [4] log likelihood: -2545.440081
EM: Round [5] log likelihood: -2545.433700
EM: Round [6] log likelihood: -2545.427402
EM: Round [7] log likelihood: -2545.421187
EM: Round [8] log likelihood: -2545.415052
EM: Round [9] log likelihood: -2545.408996
EM: Round [10] log likelihood: -2545.403018
EM: Round [11] log likelihood: -2545.397116
EM: Round [12] log likelihood: -2545.391288
EM: Round [13] log likelihood: -2545.385534
EM: Round [14] log likelihood: -2545.379852
EM: Round [15] log likelihood: -2545.374241
EM: Round [16] log likelihood: -2545.368699
EM: Round [17] log likelihood: -2545.363225
EM: Round [18] log likelihood: -2545.357818
EM: Round [19] log likelihood: -2545.352477
EM: Round [20] log likelihood: -2545.347201
EM: Round [21] log likelihood: -2545.341988
EM: Round [22] log likelihood: -2545.336838
EM: Round [23] log likelihood: -2545.331749
EM: Round [24] log likelihood: -2545.326721
EM: Round [25] log likelihood: -2545.321751
EM: Round [26] log likelihood: -2545.316841
EM: Round [27] log likelihood: -2545.311987
EM: Round [28] log likelihood: -2545.307190
EM: Round [29] log likelihood: -2545.302449
EM: Round [30] log likelihood: -2545.297762
EM: Round [31] log likelihood: -2545.293129
EM: Round [32] log likelihood: -2545.288548
EM: Round [33] log likelihood: -2545.284020
EM: Round [34] log likelihood: -2545.279543
EM: Round [35] log likelihood: -2545.275117
EM: Round [36] log likelihood: -2545.270740
EM: Round [37] log likelihood: -2545.266412
EM: Round [38] log likelihood: -2545.262132
EM: Round [39] log likelihood: -2545.257899
EM: Round [40] log likelihood: -2545.253713
EM: Round [41] log likelihood: -2545.249573
EM: Round [42] log likelihood: -2545.245478
EM: Round [43] log likelihood: -2545.241428
EM: Round [44] log likelihood: -2545.237422
EM: Round [45] log likelihood: -2545.233459
EM: Round [46] log likelihood: -2545.229538
EM: Round [47] log likelihood: -2545.225660
EM: Round [48] log likelihood: -2545.221823
EM: Round [49] log likelihood: -2545.218027
EM: Round [50] log likelihood: -2545.214271
EM: Round [51] log likelihood: -2545.210555
EM: Round [52] log likelihood: -2545.206877
EM: Round [53] log likelihood: -2545.203239
EM: Round [54] log likelihood: -2545.199638
EM: Round [55] log likelihood: -2545.196074
EM: Round [56] log likelihood: -2545.192548
EM: Round [57] log likelihood: -2545.189058
EM: Round [58] log likelihood: -2545.185604
EM: Round [59] log likelihood: -2545.182185
EM: Round [60] log likelihood: -2545.178802
EM: Round [61] log likelihood: -2545.175453
EM: Round [62] log likelihood: -2545.172137
EM: Round [63] log likelihood: -2545.168856
EM: Round [64] log likelihood: -2545.165607
EM: Round [65] log likelihood: -2545.162391
EM: Round [66] log likelihood: -2545.159208
EM: Round [67] log likelihood: -2545.156056
EM: Round [68] log likelihood: -2545.152935
EM: Round [69] log likelihood: -2545.149846
EM: Round [70] log likelihood: -2545.146787
EM: Round [71] log likelihood: -2545.143758
EM: Round [72] log likelihood: -2545.140759
EM: Round [73] log likelihood: -2545.137790
EM: Round [74] log likelihood: -2545.134849
EM: Round [75] log likelihood: -2545.131937
EM: Round [76] log likelihood: -2545.129054
EM: Round [77] log likelihood: -2545.126198
EM: Round [78] log likelihood: -2545.123370
EM: Round [79] log likelihood: -2545.120570
EM: Round [80] log likelihood: -2545.117796
EM: Round [81] log likelihood: -2545.115049
EM: Round [82] log likelihood: -2545.112328
EM: Round [83] log likelihood: -2545.109633
EM: Round [84] log likelihood: -2545.106964
EM: Round [85] log likelihood: -2545.104320
EM: Round [86] log likelihood: -2545.101701
EM: Round [87] log likelihood: -2545.099106
EM: Round [88] log likelihood: -2545.096537
EM: Round [89] log likelihood: -2545.093991
EM: Round [90] log likelihood: -2545.091469
EM: Round [91] log likelihood: -2545.088971
EM: Round [92] log likelihood: -2545.086495
EM: Round [93] log likelihood: -2545.084043
EM: Round [94] log likelihood: -2545.081614
EM: Round [95] log likelihood: -2545.079207
EM: Round [96] log likelihood: -2545.076822
EM: Round [97] log likelihood: -2545.074460
EM: Round [98] log likelihood: -2545.072119
EM: Round [99] log likelihood: -2545.069799
EM: Round [100] log likelihood: -2545.067501
EM: Round [101] log likelihood: -2545.065223
EM: Round [102] log likelihood: -2545.062967
EM: Round [103] log likelihood: -2545.060730
EM: Round [104] log likelihood: -2545.058514
EM: Round [105] log likelihood: -2545.056318
EM: Round [106] log likelihood: -2545.054142
EM: Round [107] log likelihood: -2545.051986
EM: Round [108] log likelihood: -2545.049849
EM: Round [109] log likelihood: -2545.047731
EM: Round [110] log likelihood: -2545.045631
EM: Round [111] log likelihood: -2545.043551
EM: Round [112] log likelihood: -2545.041489
EM: Round [113] log likelihood: -2545.039446
EM: Round [114] log likelihood: -2545.037420
EM: Round [115] log likelihood: -2545.035413
EM: Round [116] log likelihood: -2545.033423
EM: Round [117] log likelihood: -2545.031451
EM: Round [118] log likelihood: -2545.029496
EM: Round [119] log likelihood: -2545.027558
EM: Round [120] log likelihood: -2545.025638
EM: Round [121] log likelihood: -2545.023734
EM: Round [122] log likelihood: -2545.021846
EM: Round [123] log likelihood: -2545.019976
EM: Round [124] log likelihood: -2545.018121
EM: Round [125] log likelihood: -2545.016282
EM: Round [126] log likelihood: -2545.014460
EM: Round [127] log likelihood: -2545.012653
EM: Round [128] log likelihood: -2545.010862
EM: Round [129] log likelihood: -2545.009086
EM: Round [130] log likelihood: -2545.007326
EM: Round [131] log likelihood: -2545.005580
EM: Round [132] log likelihood: -2545.003850
EM: Round [133] log likelihood: -2545.002135
EM: Round [134] log likelihood: -2545.000434
EM: Round [135] log likelihood: -2544.998747
EM: Round [136] log likelihood: -2544.997075
EM: Round [137] log likelihood: -2544.995417
EM: Round [138] log likelihood: -2544.993774
EM: Round [139] log likelihood: -2544.992144
EM: Round [140] log likelihood: -2544.990528
EM: Round [141] log likelihood: -2544.988925
EM: Round [142] log likelihood: -2544.987336
EM: Round [143] log likelihood: -2544.985761
EM: Round [144] log likelihood: -2544.984199
EM: Round [145] log likelihood: -2544.982650
EM: Round [146] log likelihood: -2544.981113
EM: Round [147] log likelihood: -2544.979590
EM: Round [148] log likelihood: -2544.978079
EM: Round [149] log likelihood: -2544.976582
EM: Round [150] log likelihood: -2544.975096
EM: Round [151] log likelihood: -2544.973623
EM: Round [152] log likelihood: -2544.972162
EM: Round [153] log likelihood: -2544.970713
EM: Round [154] log likelihood: -2544.969276
EM: Round [155] log likelihood: -2544.967851
EM: Round [156] log likelihood: -2544.966438
EM: Round [157] log likelihood: -2544.965037
EM: Round [158] log likelihood: -2544.963647
EM: Round [159] log likelihood: -2544.962268
EM: Round [160] log likelihood: -2544.960901
EM: Round [161] log likelihood: -2544.959545
EM: Round [162] log likelihood: -2544.958200
EM: Round [163] log likelihood: -2544.956866
EM: Round [164] log likelihood: -2544.955543
EM: Round [165] log likelihood: -2544.954231
EM: Round [166] log likelihood: -2544.952930
EM: Round [167] log likelihood: -2544.951639
EM: Round [168] log likelihood: -2544.950358
EM: Round [169] log likelihood: -2544.949088
EM: Round [170] log likelihood: -2544.947828
EM: Round [171] log likelihood: -2544.946579
EM: Round [172] log likelihood: -2544.945339
EM: Round [173] log likelihood: -2544.944110
EM: Round [174] log likelihood: -2544.942891
EM: Round [175] log likelihood: -2544.941681
EM: Round [176] log likelihood: -2544.940481
EM: Round [177] log likelihood: -2544.939290
EM: Round [178] log likelihood: -2544.938110
EM: Round [179] log likelihood: -2544.936938
EM: Round [180] log likelihood: -2544.935776
EM: Round [181] log likelihood: -2544.934624
EM: Round [182] log likelihood: -2544.933480
EM: Round [183] log likelihood: -2544.932346
EM: Round [184] log likelihood: -2544.931221
EM: Round [185] log likelihood: -2544.930105
EM: Round [186] log likelihood: -2544.928997
EM: Round [187] log likelihood: -2544.927898
EM: Round [188] log likelihood: -2544.926809
EM: Round [189] log likelihood: -2544.925727
EM: Round [190] log likelihood: -2544.924655
EM: Round [191] log likelihood: -2544.923590
EM: Round [192] log likelihood: -2544.922535
EM: Round [193] log likelihood: -2544.921487
EM: Round [194] log likelihood: -2544.920448
EM: Round [195] log likelihood: -2544.919417
EM: Round [196] log likelihood: -2544.918394
EM: Round [197] log likelihood: -2544.917379
EM: Round [198] log likelihood: -2544.916372
EM: Round [199] log likelihood: -2544.915373
EM: Round [200] log likelihood: -2544.914382
EM: Round [201] log likelihood: -2544.913398
EM: Round [202] log likelihood: -2544.912423
EM: Round [203] log likelihood: -2544.911455
EM: Round [204] log likelihood: -2544.910494
EM: Round [205] log likelihood: -2544.909541
EM: Round [206] log likelihood: -2544.908595
EM: Round [207] log likelihood: -2544.907657
EM: Round [208] log likelihood: -2544.906726
EM: Round [209] log likelihood: -2544.905802
EM: Round [210] log likelihood: -2544.904886
EM: Round [211] log likelihood: -2544.903976
EM: Round [212] log likelihood: -2544.903074
EM: Round [213] log likelihood: -2544.902178
EM: Round [214] log likelihood: -2544.901290
EM: Round [215] log likelihood: -2544.900408
EM: Round [216] log likelihood: -2544.899534
EM: Round [217] log likelihood: -2544.898665
EM: Round [218] log likelihood: -2544.897804
EM: Round [219] log likelihood: -2544.896949
EM: Round [220] log likelihood: -2544.896101
EM: Round [221] log likelihood: -2544.895259
EM: Round [222] log likelihood: -2544.894424
EM: Round [223] log likelihood: -2544.893595
EM: Round [224] log likelihood: -2544.892773
EM: Round [225] log likelihood: -2544.891957
EM: Round [226] log likelihood: -2544.891147
EM: Round [227] log likelihood: -2544.890343
EM: Round [228] log likelihood: -2544.889546
EM: Round [229] log likelihood: -2544.888754
EM: Round [230] log likelihood: -2544.887969
EM: Round [231] log likelihood: -2544.887190
EM: Round [232] log likelihood: -2544.886416
EM: Round [233] log likelihood: -2544.885648
EM: Round [234] log likelihood: -2544.884887
EM: Round [235] log likelihood: -2544.884131
EM: Round [236] log likelihood: -2544.883381
EM: Round [237] log likelihood: -2544.882636
EM: Round [238] log likelihood: -2544.881897
EM: Round [239] log likelihood: -2544.881164
EM: Round [240] log likelihood: -2544.880436
EM: Round [241] log likelihood: -2544.879714
EM: Round [242] log likelihood: -2544.878997
EM: Round [243] log likelihood: -2544.878286
EM: Round [244] log likelihood: -2544.877580
EM: Round [245] log likelihood: -2544.876879
EM: Round [246] log likelihood: -2544.876184
EM: Round [247] log likelihood: -2544.875494
EM: Round [248] log likelihood: -2544.874809
EM: Round [249] log likelihood: -2544.874129
EM: Round [250] log likelihood: -2544.873455
EM: Round [251] log likelihood: -2544.872785
EM: Round [252] log likelihood: -2544.872121
EM: Round [253] log likelihood: -2544.871461
EM: Round [254] log likelihood: -2544.870806
EM: Round [255] log likelihood: -2544.870157
EM: Round [256] log likelihood: -2544.869512
EM: Round [257] log likelihood: -2544.868872
EM: Round [258] log likelihood: -2544.868237
EM: Round [259] log likelihood: -2544.867606
EM: Round [260] log likelihood: -2544.866980
EM: Round [261] log likelihood: -2544.866359
EM: Round [262] log likelihood: -2544.865743
EM: Round [263] log likelihood: -2544.865131
EM: Round [264] log likelihood: -2544.864524
EM: Round [265] log likelihood: -2544.863921
EM: Round [266] log likelihood: -2544.863323
EM: Round [267] log likelihood: -2544.862729
EM: Round [268] log likelihood: -2544.862140
EM: Round [269] log likelihood: -2544.861555
EM: Round [270] log likelihood: -2544.860974
EM: Round [271] log likelihood: -2544.860398
EM: Round [272] log likelihood: -2544.859825
EM: Round [273] log likelihood: -2544.859258
EM: Round [274] log likelihood: -2544.858694
EM: Round [275] log likelihood: -2544.858135
EM: Round [276] log likelihood: -2544.857579
EM: Round [277] log likelihood: -2544.857028
EM: Round [278] log likelihood: -2544.856481
EM: Round [279] log likelihood: -2544.855938
EM: Round [280] log likelihood: -2544.855399
EM: Round [281] log likelihood: -2544.854864
EM: Round [282] log likelihood: -2544.854332
EM: Round [283] log likelihood: -2544.853805
EM: Round [284] log likelihood: -2544.853282
EM: Round [285] log likelihood: -2544.852762
EM: Round [286] log likelihood: -2544.852247
EM: Round [287] log likelihood: -2544.851735
EM: Round [288] log likelihood: -2544.851227
EM: Round [289] log likelihood: -2544.850722
EM: Round [290] log likelihood: -2544.850222
EM: Round [291] log likelihood: -2544.849725
EM: Round [292] log likelihood: -2544.849231
EM: Round [293] log likelihood: -2544.848742
EM: Round [294] log likelihood: -2544.848255
EM: Round [295] log likelihood: -2544.847773
EM: Round [296] log likelihood: -2544.847294
EM: Round [297] log likelihood: -2544.846818
EM: Round [298] log likelihood: -2544.846346
EM: Round [299] log likelihood: -2544.845878
EM: Round [300] log likelihood: -2544.845413
EM: Round [301] log likelihood: -2544.844951
EM: Round [302] log likelihood: -2544.844492
EM: Round [303] log likelihood: -2544.844037
EM: Round [304] log likelihood: -2544.843586
EM: Round [305] log likelihood: -2544.843137
EM: Round [306] log likelihood: -2544.842692
EM: Round [307] log likelihood: -2544.842250
EM: Round [308] log likelihood: -2544.841812
EM: Round [309] log likelihood: -2544.841376
EM: Round [310] log likelihood: -2544.840944
EM: Round [311] log likelihood: -2544.840515
EM: Round [312] log likelihood: -2544.840088
EM: Round [313] log likelihood: -2544.839666
EM: Round [314] log likelihood: -2544.839246
EM: Round [315] log likelihood: -2544.838829
EM: Round [316] log likelihood: -2544.838415
EM: Round [317] log likelihood: -2544.838004
EM: Round [318] log likelihood: -2544.837596
EM: Round [319] log likelihood: -2544.837192
EM: Round [320] log likelihood: -2544.836790
EM: Round [321] log likelihood: -2544.836391
EM: Round [322] log likelihood: -2544.835994
EM: Round [323] log likelihood: -2544.835601
EM: Round [324] log likelihood: -2544.835211
EM: Round [325] log likelihood: -2544.834823
EM: Round [326] log likelihood: -2544.834438
EM: Round [327] log likelihood: -2544.834056
EM: Round [328] log likelihood: -2544.833677
EM: Round [329] log likelihood: -2544.833301
EM: Round [330] log likelihood: -2544.832927
EM: Round [331] log likelihood: -2544.832556
EM: Round [332] log likelihood: -2544.832187
EM: Round [333] log likelihood: -2544.831822
EM: Round [334] log likelihood: -2544.831459
EM: Round [335] log likelihood: -2544.831098
EM: Round [336] log likelihood: -2544.830740
EM: Round [337] log likelihood: -2544.830385
EM: Round [338] log likelihood: -2544.830032
EM: Round [339] log likelihood: -2544.829682
EM: Round [340] log likelihood: -2544.829334
EM: Round [341] log likelihood: -2544.828989
EM: Round [342] log likelihood: -2544.828646
EM: Round [343] log likelihood: -2544.828306
EM: Round [344] log likelihood: -2544.827968
EM: Round [345] log likelihood: -2544.827633
EM: Round [346] log likelihood: -2544.827300
EM: Round [347] log likelihood: -2544.826969
EM: Round [348] log likelihood: -2544.826641
EM: Round [349] log likelihood: -2544.826315
EM: Round [350] log likelihood: -2544.825992
EM: Round [351] log likelihood: -2544.825671
EM: Round [352] log likelihood: -2544.825352
EM: Round [353] log likelihood: -2544.825035
EM: Round [354] log likelihood: -2544.824721
EM: Round [355] log likelihood: -2544.824409
EM: Round [356] log likelihood: -2544.824099
EM: Round [357] log likelihood: -2544.823791
EM: Round [358] log likelihood: -2544.823486
EM: Round [359] log likelihood: -2544.823182
EM: Round [360] log likelihood: -2544.822881
EM: Round [361] log likelihood: -2544.822582
EM: Round [362] log likelihood: -2544.822286
EM: Round [363] log likelihood: -2544.821991
EM: Round [364] log likelihood: -2544.821698
EM: Round [365] log likelihood: -2544.821408
EM: Round [366] log likelihood: -2544.821119
EM: Round [367] log likelihood: -2544.820833
EM: Round [368] log likelihood: -2544.820549
EM: Round [369] log likelihood: -2544.820267
EM: Round [370] log likelihood: -2544.819986
EM: Round [371] log likelihood: -2544.819708
EM: Round [372] log likelihood: -2544.819432
EM: Round [373] log likelihood: -2544.819157
EM: Round [374] log likelihood: -2544.818885
EM: Round [375] log likelihood: -2544.818615
EM: Round [376] log likelihood: -2544.818346
EM: Round [377] log likelihood: -2544.818079
EM: Round [378] log likelihood: -2544.817815
EM: Round [379] log likelihood: -2544.817552
EM: Round [380] log likelihood: -2544.817291
EM: Round [381] log likelihood: -2544.817032
EM: Round [382] log likelihood: -2544.816775
EM: Round [383] log likelihood: -2544.816519
EM: Round [384] log likelihood: -2544.816266
EM: Round [385] log likelihood: -2544.816014
EM: Round [386] log likelihood: -2544.815764
EM: Round [387] log likelihood: -2544.815516
EM: Round [388] log likelihood: -2544.815269
EM: Round [389] log likelihood: -2544.815024
EM: Round [390] log likelihood: -2544.814781
EM: Round [391] log likelihood: -2544.814540
EM: Round [392] log likelihood: -2544.814300
EM: Round [393] log likelihood: -2544.814063
EM: Round [394] log likelihood: -2544.813826
EM: Round [395] log likelihood: -2544.813592
EM: Round [396] log likelihood: -2544.813359
EM: Round [397] log likelihood: -2544.813128
EM: Round [398] log likelihood: -2544.812898
EM: Round [399] log likelihood: -2544.812670
EM: Round [400] log likelihood: -2544.812444
EM: Round [401] log likelihood: -2544.812219
EM: Round [402] log likelihood: -2544.811996
EM: Round [403] log likelihood: -2544.811774
EM: Round [404] log likelihood: -2544.811555
EM: Round [405] log likelihood: -2544.811336
EM: Round [406] log likelihood: -2544.811119
EM: Round [407] log likelihood: -2544.810904
EM: Round [408] log likelihood: -2544.810690
EM: Round [409] log likelihood: -2544.810478
EM: Round [410] log likelihood: -2544.810267
EM: Round [411] log likelihood: -2544.810057
EM: Round [412] log likelihood: -2544.809850
EM: Round [413] log likelihood: -2544.809643
EM: Round [414] log likelihood: -2544.809438
EM: Round [415] log likelihood: -2544.809235
EM: Round [416] log likelihood: -2544.809033
EM: Round [417] log likelihood: -2544.808832
EM: Round [418] log likelihood: -2544.808633
EM: Round [419] log likelihood: -2544.808435
EM: Round [420] log likelihood: -2544.808238
EM: Round [421] log likelihood: -2544.808043
EM: Round [422] log likelihood: -2544.807850
EM: Round [423] log likelihood: -2544.807657
EM: Round [424] log likelihood: -2544.807466
EM: Round [425] log likelihood: -2544.807277
EM: Round [426] log likelihood: -2544.807089
EM: Round [427] log likelihood: -2544.806902
EM: Round [428] log likelihood: -2544.806716
EM: Round [429] log likelihood: -2544.806532
EM: Round [430] log likelihood: -2544.806349
EM: Round [431] log likelihood: -2544.806167
EM: Round [432] log likelihood: -2544.805986
EM: Round [433] log likelihood: -2544.805807
EM: Round [434] log likelihood: -2544.805629
EM: Round [435] log likelihood: -2544.805453
EM: Round [436] log likelihood: -2544.805277
EM: Round [437] log likelihood: -2544.805103
EM: Round [438] log likelihood: -2544.804930
EM: Round [439] log likelihood: -2544.804758
EM: Round [440] log likelihood: -2544.804587
EM: Round [441] log likelihood: -2544.804418
EM: Round [442] log likelihood: -2544.804250
EM: Round [443] log likelihood: -2544.804083
EM: Round [444] log likelihood: -2544.803917
EM: Round [445] log likelihood: -2544.803752
EM: Round [446] log likelihood: -2544.803589
EM: Round [447] log likelihood: -2544.803426
EM: Round [448] log likelihood: -2544.803265
EM: Round [449] log likelihood: -2544.803105
EM: Round [450] log likelihood: -2544.802946
EM: Round [451] log likelihood: -2544.802788
EM: Round [452] log likelihood: -2544.802631
EM: Round [453] log likelihood: -2544.802476
EM: Round [454] log likelihood: -2544.802321
EM: Round [455] log likelihood: -2544.802168
EM: Round [456] log likelihood: -2544.802015
EM: Round [457] log likelihood: -2544.801864
EM: Round [458] log likelihood: -2544.801714
EM: Round [459] log likelihood: -2544.801564
EM: Round [460] log likelihood: -2544.801416
EM: Round [461] log likelihood: -2544.801269
EM: Round [462] log likelihood: -2544.801123
EM: Round [463] log likelihood: -2544.800978
EM: Round [464] log likelihood: -2544.800834
EM: Round [465] log likelihood: -2544.800691
EM: Round [466] log likelihood: -2544.800549
EM: Round [467] log likelihood: -2544.800407
EM: Round [468] log likelihood: -2544.800267
EM: Round [469] log likelihood: -2544.800128
EM: Round [470] log likelihood: -2544.799990
EM: Round [471] log likelihood: -2544.799853
EM: Round [472] log likelihood: -2544.799717
EM: Round [473] log likelihood: -2544.799581
EM: Round [474] log likelihood: -2544.799447
EM: Round [475] log likelihood: -2544.799314
EM: Round [476] log likelihood: -2544.799181
EM: Round [477] log likelihood: -2544.799050
EM: Round [478] log likelihood: -2544.798919
EM: Round [479] log likelihood: -2544.798789
EM: Round [480] log likelihood: -2544.798660
EM: Round [481] log likelihood: -2544.798532
EM: Round [482] log likelihood: -2544.798405
EM: Round [483] log likelihood: -2544.798279
EM: Round [484] log likelihood: -2544.798154
EM: Round [485] log likelihood: -2544.798030
EM: Round [486] log likelihood: -2544.797906
EM: Round [487] log likelihood: -2544.797784
EM: Round [488] log likelihood: -2544.797662
EM: Round [489] log likelihood: -2544.797541
EM: Round [490] log likelihood: -2544.797421
EM: Round [491] log likelihood: -2544.797301
EM: Round [492] log likelihood: -2544.797183
EM: Round [493] log likelihood: -2544.797065
EM: Round [494] log likelihood: -2544.796949
EM: Round [495] log likelihood: -2544.796833
EM: Round [496] log likelihood: -2544.796717
EM: Round [497] log likelihood: -2544.796603
EM: Round [498] log likelihood: -2544.796489
EM: Round [499] log likelihood: -2544.796377
EM: Round [500] log likelihood: -2544.796265
EM: Round [501] log likelihood: -2544.796153
EM: Round [502] log likelihood: -2544.796043
EM: Round [503] log likelihood: -2544.795933
EM: Round [504] log likelihood: -2544.795824
EM: Round [505] log likelihood: -2544.795716
EM: Round [506] log likelihood: -2544.795609
EM: Round [507] log likelihood: -2544.795502
EM: Round [508] log likelihood: -2544.795396
EM: Round [509] log likelihood: -2544.795291
EM: Round [510] log likelihood: -2544.795187
EM: Round [511] log likelihood: -2544.795083
EM: Round [512] log likelihood: -2544.794980
EM: Round [513] log likelihood: -2544.794878
EM: Round [514] log likelihood: -2544.794776
EM: Round [515] log likelihood: -2544.794675
EM: Round [516] log likelihood: -2544.794575
EM: Round [517] log likelihood: -2544.794476
EM: Stopping iterations at round 517 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296622551
Warning - not locating file: /tmp/nxf.jazekgGvtR/aih-tih-sc-a9fe91-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
ls: cannot access 'IGV_inputs': No such file or directory