File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/8958937ffdc7884b9f27b7308b1479/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:23:50
                             Started mapping on |	Jun 08 10:30:27
                                    Finished on |	Jun 08 11:40:55
       Mapping speed, Million of reads per hour |	252.27

                          Number of input reads |	296271835
                      Average input read length |	264
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280278215
                        Uniquely mapped reads % |	94.60%
                          Average mapped length |	263.63
                       Number of splices: Total |	284266094
            Number of splices: Annotated (sjdb) |	279320934
                       Number of splices: GT/AG |	280740161
                       Number of splices: GC/AG |	2128508
                       Number of splices: AT/AC |	218148
               Number of splices: Non-canonical |	1179277
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.98
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.92
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11987892
             % of reads mapped to multiple loci |	4.05%
        Number of reads mapped to too many loci |	974286
             % of reads mapped to too many loci |	0.33%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2475824
                 % of reads unmapped: too short |	0.84%
                Number of reads unmapped: other |	555618
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%