Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/cd3f1735e45da35910fb39653aff32/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/95ef80a5c2c55d4c631bf57cd07d4e/aih-tih-sc-f7ac14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/7e23b84c682f9953b6ee2bd6897164/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/7e23b84c682f9953b6ee2bd6897164/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory