File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/59feb8c6f6a5fc97fded9484129e4b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:50:49
                             Started mapping on |	Jun 08 07:57:14
                                    Finished on |	Jun 08 08:01:58
       Mapping speed, Million of reads per hour |	376.56

                          Number of input reads |	29706015
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	27318642
                        Uniquely mapped reads % |	91.96%
                          Average mapped length |	218.79
                       Number of splices: Total |	17832213
            Number of splices: Annotated (sjdb) |	17334560
                       Number of splices: GT/AG |	17469324
                       Number of splices: GC/AG |	202613
                       Number of splices: AT/AC |	10991
               Number of splices: Non-canonical |	149285
                      Mismatch rate per base, % |	0.40%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.10
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.91
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1801371
             % of reads mapped to multiple loci |	6.06%
        Number of reads mapped to too many loci |	199664
             % of reads mapped to too many loci |	0.67%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	324631
                 % of reads unmapped: too short |	1.09%
                Number of reads unmapped: other |	61707
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%