Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/900c23bee1125e54bc25e8156171df/aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/5cb7dba4b60cb4ffd743c109481b48/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/5cb7dba4b60cb4ffd743c109481b48/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
paired = 184917351
unpaired = 2641470
MERGED PAIRED END READS = 184917351
MATES PROCESSED = 372476172
TOTAL READS     = 187558821
DISTINCT READS  = 7.13056e+07
DISTINCT COUNTS = 1173
MAX COUNT       = 420049
COUNTS OF 1     = 3.23174e+07
MAX TERMS       = 100
OBSERVED COUNTS (420050)
1	32317425
2	16586534
3	9137991
4	5083915
5	2875056
6	1677022
7	1016303
8	647590
9	429784
10	298226
11	214261
12	158495
13	120963
14	94164
15	75203
16	61328
17	50450
18	41856
19	35892
20	30981
21	26399
22	23394
23	20945
24	18479
25	16300
26	14740
27	13140
28	12059
29	10909
30	9971
31	9175
32	8296
33	7702
34	7021
35	6546
36	6062
37	5749
38	5354
39	5030
40	4694
41	4400
42	4128
43	3909
44	3716
45	3438
46	3274
47	3053
48	2958
49	2844
50	2732
51	2513
52	2327
53	2301
54	2152
55	2111
56	2083
57	1909
58	1845
59	1708
60	1650
61	1624
62	1520
63	1455
64	1479
65	1362
66	1334
67	1334
68	1214
69	1182
70	1118
71	1142
72	1073
73	1056
74	1012
75	917
76	941
77	907
78	887
79	805
80	846
81	767
82	755
83	748
84	678
85	731
86	669
87	644
88	660
89	672
90	591
91	622
92	555
93	545
94	595
95	566
96	511
97	497
98	506
99	471
100	464
101	451
102	451
103	493
104	460
105	450
106	402
107	386
108	381
109	416
110	384
111	366
112	335
113	369
114	340
115	353
116	348
117	285
118	340
119	319
120	321
121	282
122	293
123	273
124	272
125	273
126	272
127	258
128	263
129	262
130	242
131	242
132	225
133	222
134	215
135	208
136	238
137	206
138	222
139	201
140	212
141	214
142	178
143	184
144	176
145	180
146	194
147	183
148	178
149	172
150	183
151	175
152	144
153	158
154	148
155	161
156	167
157	175
158	165
159	152
160	144
161	138
162	146
163	145
164	126
165	138
166	126
167	130
168	139
169	120
170	127
171	126
172	122
173	134
174	122
175	124
176	128
177	128
178	99
179	100
180	117
181	95
182	117
183	91
184	110
185	86
186	108
187	94
188	100
189	95
190	102
191	89
192	108
193	91
194	89
195	86
196	95
197	76
198	92
199	72
200	77
201	89
202	96
203	95
204	84
205	80
206	90
207	81
208	66
209	73
210	94
211	66
212	67
213	73
214	74
215	67
216	73
217	58
218	69
219	60
220	69
221	75
222	65
223	71
224	54
225	61
226	55
227	59
228	59
229	54
230	45
231	57
232	50
233	69
234	45
235	61
236	59
237	53
238	58
239	44
240	46
241	60
242	48
243	46
244	46
245	43
246	43
247	47
248	45
249	39
250	40
251	40
252	46
253	35
254	50
255	46
256	29
257	48
258	41
259	50
260	41
261	54
262	37
263	36
264	46
265	43
266	39
267	30
268	37
269	40
270	38
271	33
272	36
273	37
274	35
275	35
276	36
277	34
278	38
279	35
280	30
281	37
282	32
283	25
284	33
285	27
286	25
287	31
288	37
289	33
290	23
291	44
292	41
293	40
294	32
295	33
296	23
297	25
298	23
299	29
300	23
301	28
302	23
303	40
304	26
305	30
306	31
307	32
308	27
309	21
310	27
311	26
312	28
313	23
314	20
315	27
316	22
317	29
318	20
319	28
320	19
321	25
322	21
323	15
324	19
325	20
326	22
327	17
328	20
329	20
330	24
331	27
332	15
333	15
334	21
335	15
336	31
337	23
338	18
339	18
340	21
341	14
342	19
343	17
344	20
345	22
346	16
347	22
348	26
349	25
350	16
351	18
352	23
353	13
354	27
355	21
356	14
357	15
358	22
359	16
360	18
361	14
362	19
363	21
364	18
365	12
366	14
367	18
368	16
369	14
370	12
371	15
372	19
373	21
374	17
375	16
376	12
377	11
378	14
379	11
380	11
381	18
382	20
383	22
384	17
385	13
386	12
387	12
388	14
389	11
390	15
391	15
392	12
393	17
394	16
395	13
396	8
397	20
398	12
399	11
400	17
401	14
402	20
403	20
404	19
405	9
406	13
407	10
408	14
409	13
410	10
411	11
412	19
413	9
414	10
415	11
416	12
417	18
418	5
419	7
420	13
421	14
422	9
423	10
424	10
425	13
426	5
427	12
428	11
429	14
430	6
431	12
432	9
433	10
434	11
435	7
436	11
437	9
438	11
439	3
440	11
441	7
442	7
443	8
444	6
445	6
446	10
447	15
448	6
449	5
450	12
451	18
452	11
453	7
454	12
455	8
456	11
457	13
458	11
459	5
460	9
461	7
462	8
463	13
464	8
465	4
466	11
467	6
468	9
469	8
470	9
471	8
472	10
473	3
474	5
475	4
476	11
477	13
478	8
479	6
480	4
481	10
482	9
483	7
484	11
485	4
486	7
487	8
488	9
489	12
490	7
491	7
492	3
493	6
494	11
495	12
496	7
497	10
498	7
499	10
500	6
501	9
502	11
503	10
504	5
505	9
506	5
507	8
508	3
509	4
510	11
511	5
512	11
513	8
514	8
515	10
516	8
517	7
518	3
519	6
520	5
521	2
522	4
523	7
524	5
525	9
526	2
527	3
528	3
529	7
530	9
531	6
532	6
533	6
534	7
535	7
536	7
537	9
538	2
539	4
540	4
541	5
542	2
543	4
544	7
545	2
546	3
547	5
548	6
549	7
550	8
551	7
552	4
553	1
554	4
556	4
557	5
558	8
559	2
560	3
561	5
562	4
563	4
564	8
565	6
566	4
567	4
568	8
569	3
570	4
571	4
572	7
573	2
574	2
575	7
576	5
577	3
578	5
579	2
580	6
581	2
582	6
583	4
584	4
585	4
586	4
587	5
588	4
589	8
590	5
591	5
592	5
593	3
594	3
595	4
596	1
597	3
598	4
599	2
600	6
601	3
602	5
603	3
604	4
605	4
606	3
607	3
608	7
609	3
610	5
611	3
612	3
613	3
614	3
615	2
617	2
618	2
619	4
620	4
621	5
622	5
623	5
624	5
625	3
626	3
627	1
628	3
629	5
630	2
631	2
632	4
633	4
634	1
635	1
636	7
637	4
638	1
639	4
640	5
642	4
644	6
645	3
646	3
647	2
648	3
649	2
650	3
651	2
652	3
653	3
654	1
655	6
656	3
657	4
658	1
660	3
661	1
663	4
664	2
665	2
666	8
667	2
668	4
669	1
670	2
671	2
672	5
673	7
674	2
676	5
677	3
678	3
679	1
680	4
681	2
682	3
683	4
684	3
685	4
686	2
687	1
690	1
691	2
692	4
693	1
694	2
695	3
696	2
697	4
698	1
699	2
700	1
701	3
702	1
703	3
704	2
705	3
706	2
707	3
708	2
709	1
710	3
711	2
712	3
713	3
714	3
715	2
716	5
717	1
718	4
719	3
720	1
721	2
722	2
723	1
724	5
725	2
726	4
727	1
728	3
729	2
730	1
732	2
733	3
734	2
735	3
736	2
737	1
739	3
740	2
742	3
743	2
744	3
745	2
747	1
748	3
749	3
750	4
751	1
752	2
753	3
754	4
755	3
756	3
757	1
758	2
759	3
760	1
761	2
762	2
763	3
764	1
766	2
767	2
768	2
769	3
770	3
772	3
773	3
774	1
775	1
776	1
777	1
780	3
782	1
783	1
785	2
786	1
787	1
788	2
789	3
791	2
793	1
794	1
795	6
797	2
798	1
799	1
800	2
801	3
803	2
804	4
805	1
806	1
807	5
808	1
809	1
811	1
812	3
813	2
814	1
815	1
816	3
817	1
818	1
819	1
820	3
821	3
825	1
826	2
827	2
828	1
829	2
830	4
831	2
832	1
833	1
834	2
835	1
836	2
837	2
838	4
839	3
840	2
841	4
843	2
844	5
845	2
846	3
848	1
849	4
850	1
851	1
852	3
853	3
854	1
855	1
856	2
857	1
859	1
862	3
865	1
867	1
869	1
870	2
871	1
873	2
874	1
875	1
879	2
880	5
883	3
885	1
886	1
887	1
889	2
891	3
892	1
895	1
896	1
899	1
902	1
903	2
905	3
907	3
909	2
912	1
913	1
914	3
915	1
916	5
917	1
918	1
919	1
920	2
923	1
924	1
926	1
927	1
931	1
934	2
936	1
937	1
940	1
941	2
943	1
945	3
947	1
950	2
951	1
953	2
955	1
956	2
958	1
959	1
961	1
962	1
966	1
968	1
970	3
971	2
972	1
974	1
975	1
976	1
979	2
981	3
982	1
983	4
987	1
988	1
989	1
991	1
999	3
1000	2
1003	1
1004	2
1005	1
1006	1
1007	1
1009	1
1010	1
1011	2
1012	1
1013	2
1018	1
1019	1
1020	1
1021	1
1022	1
1023	1
1024	3
1025	1
1027	1
1029	1
1030	1
1031	2
1037	1
1039	1
1040	1
1041	2
1043	1
1046	1
1047	1
1050	1
1053	1
1056	1
1058	3
1060	1
1063	1
1065	1
1067	1
1070	1
1071	1
1072	1
1075	1
1076	1
1077	2
1078	2
1079	1
1085	1
1088	2
1091	1
1092	1
1094	3
1097	1
1101	1
1103	1
1104	1
1105	1
1106	1
1107	2
1108	1
1111	1
1115	2
1116	1
1122	1
1123	1
1124	1
1127	1
1130	1
1132	1
1134	1
1135	1
1136	2
1141	1
1142	2
1144	1
1147	1
1148	1
1149	1
1151	1
1154	1
1155	1
1156	2
1158	1
1160	1
1163	2
1164	1
1167	1
1172	2
1176	2
1177	1
1181	1
1186	1
1190	1
1194	1
1195	1
1198	1
1202	1
1204	1
1208	1
1209	1
1216	2
1219	1
1221	1
1222	1
1235	1
1237	1
1241	2
1250	1
1251	2
1259	2
1266	1
1268	1
1271	1
1274	1
1275	1
1277	1
1278	2
1284	1
1286	1
1295	1
1297	1
1298	2
1303	1
1306	1
1324	1
1330	1
1331	1
1333	1
1335	1
1337	1
1344	2
1347	1
1353	1
1358	1
1371	1
1372	1
1374	1
1379	1
1384	1
1392	2
1397	1
1399	1
1405	1
1406	1
1411	1
1429	1
1432	1
1434	1
1436	1
1438	1
1442	1
1452	1
1455	1
1457	1
1462	1
1464	1
1471	1
1473	1
1488	1
1489	1
1499	1
1503	1
1509	1
1514	1
1516	1
1518	1
1528	1
1530	1
1542	1
1550	1
1567	1
1568	1
1571	1
1573	1
1580	3
1591	1
1595	1
1604	1
1619	1
1625	1
1627	2
1630	1
1632	1
1651	1
1653	1
1656	1
1657	1
1659	1
1669	1
1672	1
1674	1
1688	1
1693	1
1698	1
1703	1
1708	1
1723	1
1748	1
1751	1
1754	1
1755	1
1759	1
1760	1
1768	1
1772	1
1789	1
1810	1
1811	1
1817	2
1826	1
1827	3
1877	1
1886	1
1922	1
1923	1
1972	1
1978	1
1983	1
1984	1
1991	1
2012	1
2021	1
2024	1
2053	1
2074	1
2078	1
2100	1
2114	1
2138	1
2165	1
2170	1
2227	1
2253	1
2258	1
2284	1
2295	1
2297	1
2302	1
2328	1
2363	1
2389	1
2406	1
2456	1
2466	1
2635	1
2638	1
2680	1
2853	1
2865	1
2927	1
2975	1
2990	1
3027	1
3030	1
3052	1
3090	1
3123	1
3132	1
3138	1
3441	1
3587	1
3765	1
4219	1
4534	1
4643	1
5451	1
5791	1
6401	1
7594	1
25885	1
420049	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............................._.........._.........................._....
...............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]