File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ef3f28f10d0db51b26e31e84b4b610/.command.log
Size
5.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-573e21-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/8419a5d19298fe53b8d1d9942a78a9/aih-tih-sc-573e21-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ef3f28f10d0db51b26e31e84b4b610/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ef3f28f10d0db51b26e31e84b4b610/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/2d279dfa5833cd085227cf65638e89/aih-tih-sc-573e21-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TRRAP--SMURF1
starfusion
COL1A1--SLC45A4
starfusion
CNOT2--MYRFL
starfusion
RAB3IP--FRS2
starfusion
SH3KBP1--RPS6KA3
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
SEC23B--AC010183.2
starfusion
arriba
RPSAP52--HMGA2
starfusion
INPP5A--AL731769.2
starfusion
arriba
SH3KBP1--AL807740.1
arriba
SH3KBP1--AL807742.1
arriba
SEC23B--LINC02459
arriba
TVP23C--CDRT4
arriba
C1QTNF3--AMACR
arriba
STX16--NPEPL1
arriba
PPP6R3--AP003096.1
arriba
PPP6R3--GAL
arriba
LYN--TGS1
arriba
OTOAP1--SCNN1B
arriba
AC009021.2--SCNN1B
arriba
PDE4D--PSMA2P1
arriba
PDE4D--AP003497.1
arriba

  0%|          | 0/23 [00:00<?, ?it/s]
Processing TRRAP--SMURF1:   0%|          | 0/23 [00:00<?, ?it/s]
Processing TRRAP--SMURF1:   4%|▍         | 1/23 [00:00<00:02,  9.24it/s]
Processing COL1A1--SLC45A4:   4%|▍         | 1/23 [00:00<00:02,  9.24it/s]
Processing COL1A1--SLC45A4:   9%|▊         | 2/23 [00:00<00:02,  9.48it/s]
Processing CNOT2--MYRFL:   9%|▊         | 2/23 [00:00<00:02,  9.48it/s]   
Processing CNOT2--MYRFL:  13%|█▎        | 3/23 [00:00<00:02,  9.55it/s]
Processing RAB3IP--FRS2:  13%|█▎        | 3/23 [00:00<00:02,  9.55it/s]
Processing RAB3IP--FRS2:  17%|█▋        | 4/23 [00:00<00:01,  9.59it/s]
Processing SH3KBP1--RPS6KA3:  17%|█▋        | 4/23 [00:00<00:01,  9.59it/s]
Processing SH3KBP1--RPS6KA3:  22%|██▏       | 5/23 [00:00<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  22%|██▏       | 5/23 [00:00<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  26%|██▌       | 6/23 [00:00<00:01,  9.63it/s]
Processing TLK2--AC240565.1:  26%|██▌       | 6/23 [00:00<00:01,  9.63it/s]  
Processing TLK2--AC240565.1:  30%|███       | 7/23 [00:00<00:01,  9.63it/s]
Processing SEC23B--AC010183.2:  30%|███       | 7/23 [00:00<00:01,  9.63it/s]
Processing SEC23B--AC010183.2:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]
Processing RPSAP52--HMGA2:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]    
Processing RPSAP52--HMGA2:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing INPP5A--AL731769.2:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing INPP5A--AL731769.2:  43%|████▎     | 10/23 [00:01<00:01,  9.64it/s]
Processing SH3KBP1--AL807740.1:  43%|████▎     | 10/23 [00:01<00:01,  9.64it/s]
Processing SH3KBP1--AL807740.1:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing SH3KBP1--AL807742.1:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing SH3KBP1--AL807742.1:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]
Processing SEC23B--LINC02459:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]  
Processing SEC23B--LINC02459:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]    
Processing TVP23C--CDRT4:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]
Processing C1QTNF3--AMACR:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]
Processing C1QTNF3--AMACR:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s]
Processing STX16--NPEPL1:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s] 
Processing STX16--NPEPL1:  70%|██████▉   | 16/23 [00:01<00:00,  9.65it/s]
Processing PPP6R3--AP003096.1:  70%|██████▉   | 16/23 [00:01<00:00,  9.65it/s]
Processing PPP6R3--AP003096.1:  74%|███████▍  | 17/23 [00:01<00:00,  9.65it/s]
Processing PPP6R3--GAL:  74%|███████▍  | 17/23 [00:01<00:00,  9.65it/s]       
Processing PPP6R3--GAL:  78%|███████▊  | 18/23 [00:01<00:00,  9.65it/s]
Processing LYN--TGS1:  78%|███████▊  | 18/23 [00:01<00:00,  9.65it/s]  
Processing LYN--TGS1:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]
Processing OTOAP1--SCNN1B:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]
Processing OTOAP1--SCNN1B:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s]
Processing AC009021.2--SCNN1B:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s]
Processing AC009021.2--SCNN1B:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing PDE4D--PSMA2P1:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]    
Processing PDE4D--PSMA2P1:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing PDE4D--AP003497.1:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing PDE4D--AP003497.1: 100%|██████████| 23/23 [00:02<00:00,  9.65it/s]
Processing PDE4D--AP003497.1: 100%|██████████| 23/23 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory