File Info
- Filename
- aih-tih-sc-573e21-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ef3f28f10d0db51b26e31e84b4b610/aih-tih-sc-573e21-R1_A23YTGFLT4_1.fusions.csv
- Size
- 5.1 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-573e21-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TRRAP--SMURF1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:99005348:+#chr7:99061837:-,junction_reads: 49,spanning_reads: 0,ffmp: 0.1656 | ||
| COL1A1--SLC45A4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:50189867:-#chr8:141254178:-,junction_reads: 40,spanning_reads: 0,ffmp: 0.1352 | ||
| CNOT2--MYRFL | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:70243480:+#chr12:69855280:+,junction_reads: 40,spanning_reads: 0,ffmp: 0.1352 | ||
| RAB3IP--FRS2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr12:69756663:+#chr12:69530865:+,junction_reads: 25,spanning_reads: 2,ffmp: 0.0913 | |
| SH3KBP1--RPS6KA3 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chrX:19836125:-#chrX:20234814:-,junction_reads: 16,spanning_reads: 0,ffmp: 0.0541 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0295 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0041 | ||
| SEC23B--AC010183.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:18535742#chr12:114178760,reading-frame: out-of-frame,type: translocation,split_reads1: 300,split_reads2: 47,discordant_mates: 20,coverage1: 4811,coverage2: 83,confidence: high | position: chr20:18535742:+#chr12:114113341:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0338 | |
| RPSAP52--HMGA2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr12:65826843:-#chr12:65828001:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0338 | |
| INPP5A--AL731769.2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:132645968#chr10:133608144,reading-frame: out-of-frame,type: deletion,split_reads1: 8,split_reads2: 1,discordant_mates: 1,coverage1: 567,coverage2: 3,confidence: high | position: chr10:132645968:+#chr10:133608144:+,junction_reads: 9,spanning_reads: 1,ffmp: 0.0338 | |
| SH3KBP1--AL807740.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:19836125#chrX:20727039,reading-frame: out-of-frame,type: duplication,split_reads1: 300,split_reads2: 137,discordant_mates: 18,coverage1: 11514,coverage2: 305,confidence: high | ||
| SH3KBP1--AL807742.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:19836125#chrX:20727039,reading-frame: out-of-frame,type: duplication,split_reads1: 300,split_reads2: 137,discordant_mates: 18,coverage1: 11514,coverage2: 305,confidence: high | ||
| SEC23B--LINC02459 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:18535742#chr12:114178760,reading-frame: out-of-frame,type: translocation,split_reads1: 300,split_reads2: 47,discordant_mates: 20,coverage1: 4811,coverage2: 83,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 30,discordant_mates: 1,coverage1: 790,coverage2: 430,confidence: high | |
| C1QTNF3--AMACR | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:34020587#chr5:34005899,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 46,split_reads2: 35,discordant_mates: 2,coverage1: 584,coverage2: 1602,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 33,split_reads2: 33,discordant_mates: 0,coverage1: 1776,coverage2: 377,confidence: high | ||
| PPP6R3--AP003096.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:68576043#chr11:68683042,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 25,split_reads2: 28,discordant_mates: 0,coverage1: 1517,coverage2: 117,confidence: high | ||
| PPP6R3--GAL | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr11:68576043#chr11:68683042,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 25,split_reads2: 28,discordant_mates: 0,coverage1: 1517,coverage2: 117,confidence: high | |
| LYN--TGS1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr8:55966897#chr8:55810881,reading-frame: in-frame,type: duplication,split_reads1: 18,split_reads2: 19,discordant_mates: 2,coverage1: 690,coverage2: 493,confidence: high | |
| OTOAP1--SCNN1B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:22585524#chr16:23348592,reading-frame: .,type: deletion,split_reads1: 2,split_reads2: 21,discordant_mates: 0,coverage1: 3,coverage2: 214,confidence: high | ||
| AC009021.2--SCNN1B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:22585524#chr16:23348592,reading-frame: .,type: deletion,split_reads1: 2,split_reads2: 21,discordant_mates: 0,coverage1: 3,coverage2: 214,confidence: high | ||
| PDE4D--PSMA2P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:59038859#chr11:87362357,reading-frame: out-of-frame,type: translocation,split_reads1: 15,split_reads2: 2,discordant_mates: 1,coverage1: 724,coverage2: 7,confidence: high | ||
| PDE4D--AP003497.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:59038859#chr11:87362357,reading-frame: out-of-frame,type: translocation,split_reads1: 15,split_reads2: 2,discordant_mates: 1,coverage1: 724,coverage2: 7,confidence: high |
24 rows