[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-28eb14-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	327784095
Known Splicing Events:	324897250
Partial Novel Splicing Events:	1914217
Novel Splicing Events:	867754
Filtered Splicing Events:	104874

Total splicing  Junctions:	616171
Known Splicing Junctions:	285282
Partial Novel Splicing Junctions:	183707
Novel Splicing Junctions:	147182

===================================================================
Create BED file ...
Create Interact file ...