Done.
-parsing GTF file: /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.hYsFMavD4O/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_1.fastp.fastq.gz /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.sortedByCoord.out.bam
11:56:23 : INFO : Done.
-parsing GTF file: /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gtf
-parsing /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam

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[970000]   -done parsing /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 20,
          'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 8,
          ' ** passed ** ' => 2826,
          'low complexity anchor region' => 4,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 153,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 56,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 1,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 246,
          'exons hit < 2' => 45,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 12,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 20,
          'excessive soft clipping' => 5593,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 4,
          'num genes matched < 2' => 20,
          'per_id < 96' => 3508,
          'small anchor length' => 28
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   
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[4000]   -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

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[22000]   -fusion SPANNING read extraction for scaff: AMDHD1--PROCR

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[46000]   -fusion SPANNING read extraction for scaff: ASAP1--CCDC26

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[19000]   -fusion SPANNING read extraction for scaff: BBOX1-AS1--ADGRL3

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: CYCTP--PDE11A

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[11000]   -fusion SPANNING read extraction for scaff: FBXO25--AC240565.1
-fusion SPANNING read extraction for scaff: GUCY1B2--NKAIN2

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[19000]   -fusion SPANNING read extraction for scaff: KCNMB2-AS1--ADGRL3

[1000]   -fusion SPANNING read extraction for scaff: LINC00381--NKAIN2

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[20000]   -fusion SPANNING read extraction for scaff: LRCH1--GRID1

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[206000]   -fusion SPANNING read extraction for scaff: NECTIN3--PHLDB2

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[21000]   -fusion SPANNING read extraction for scaff: NECTIN3--PLCXD2

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[206000]   -fusion SPANNING read extraction for scaff: PHLDB2--NECTIN3

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[13000]   
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[21000]   -fusion SPANNING read extraction for scaff: PLCXD2--NECTIN3

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[29000]   -fusion SPANNING read extraction for scaff: PMS2P6--CCDC146

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[34000]   -fusion SPANNING read extraction for scaff: PRSS27--TPSB2

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[65000]   -fusion SPANNING read extraction for scaff: SELENOO--TUBGCP6

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[54000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

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[94000]   -fusion SPANNING read extraction for scaff: SVEP1--MYLK

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[37000]   -fusion SPANNING read extraction for scaff: TLK2--FAM157A

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[5000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[32000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

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[18000]   -fusion SPANNING read extraction for scaff: UBE2Q2P1--GOLGA6L10
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 7025
        };
EM: Starting log likelihood: -4825.284770
EM: Round [1] log likelihood: -4816.271941
EM: Round [2] log likelihood: -4814.975935
EM: Round [3] log likelihood: -4814.712319
EM: Round [4] log likelihood: -4814.609416
EM: Round [5] log likelihood: -4814.553168
EM: Round [6] log likelihood: -4814.519112
EM: Round [7] log likelihood: -4814.497034
EM: Round [8] log likelihood: -4814.481593
EM: Round [9] log likelihood: -4814.469871
EM: Round [10] log likelihood: -4814.460259
EM: Round [11] log likelihood: -4814.451865
EM: Round [12] log likelihood: -4814.444193
EM: Round [13] log likelihood: -4814.436968
EM: Round [14] log likelihood: -4814.430035
EM: Round [15] log likelihood: -4814.423307
EM: Round [16] log likelihood: -4814.416737
EM: Round [17] log likelihood: -4814.410295
EM: Round [18] log likelihood: -4814.403964
EM: Round [19] log likelihood: -4814.397736
EM: Round [20] log likelihood: -4814.391604
EM: Round [21] log likelihood: -4814.385563
EM: Round [22] log likelihood: -4814.379611
EM: Round [23] log likelihood: -4814.373744
EM: Round [24] log likelihood: -4814.367960
EM: Round [25] log likelihood: -4814.362259
EM: Round [26] log likelihood: -4814.356637
EM: Round [27] log likelihood: -4814.351094
EM: Round [28] log likelihood: -4814.345627
EM: Round [29] log likelihood: -4814.340236
EM: Round [30] log likelihood: -4814.334919
EM: Round [31] log likelihood: -4814.329674
EM: Round [32] log likelihood: -4814.324500
EM: Round [33] log likelihood: -4814.319397
EM: Round [34] log likelihood: -4814.314361
EM: Round [35] log likelihood: -4814.309393
EM: Round [36] log likelihood: -4814.304491
EM: Round [37] log likelihood: -4814.299653
EM: Round [38] log likelihood: -4814.294879
EM: Round [39] log likelihood: -4814.290168
EM: Round [40] log likelihood: -4814.285518
EM: Round [41] log likelihood: -4814.280929
EM: Round [42] log likelihood: -4814.276399
EM: Round [43] log likelihood: -4814.271927
EM: Round [44] log likelihood: -4814.267512
EM: Round [45] log likelihood: -4814.263153
EM: Round [46] log likelihood: -4814.258850
EM: Round [47] log likelihood: -4814.254601
EM: Round [48] log likelihood: -4814.250406
EM: Round [49] log likelihood: -4814.246263
EM: Round [50] log likelihood: -4814.242172
EM: Round [51] log likelihood: -4814.238132
EM: Round [52] log likelihood: -4814.234141
EM: Round [53] log likelihood: -4814.230200
EM: Round [54] log likelihood: -4814.226307
EM: Round [55] log likelihood: -4814.222462
EM: Round [56] log likelihood: -4814.218664
EM: Round [57] log likelihood: -4814.214912
EM: Round [58] log likelihood: -4814.211205
EM: Round [59] log likelihood: -4814.207543
EM: Round [60] log likelihood: -4814.203925
EM: Round [61] log likelihood: -4814.200350
EM: Round [62] log likelihood: -4814.196818
EM: Round [63] log likelihood: -4814.193328
EM: Round [64] log likelihood: -4814.189879
EM: Round [65] log likelihood: -4814.186471
EM: Round [66] log likelihood: -4814.183103
EM: Round [67] log likelihood: -4814.179774
EM: Round [68] log likelihood: -4814.176484
EM: Round [69] log likelihood: -4814.173232
EM: Round [70] log likelihood: -4814.170019
EM: Round [71] log likelihood: -4814.166842
EM: Round [72] log likelihood: -4814.163702
EM: Round [73] log likelihood: -4814.160598
EM: Round [74] log likelihood: -4814.157530
EM: Round [75] log likelihood: -4814.154497
EM: Round [76] log likelihood: -4814.151498
EM: Round [77] log likelihood: -4814.148533
EM: Round [78] log likelihood: -4814.145602
EM: Round [79] log likelihood: -4814.142704
EM: Round [80] log likelihood: -4814.139839
EM: Round [81] log likelihood: -4814.137005
EM: Round [82] log likelihood: -4814.134204
EM: Round [83] log likelihood: -4814.131434
EM: Round [84] log likelihood: -4814.128694
EM: Round [85] log likelihood: -4814.125985
EM: Round [86] log likelihood: -4814.123306
EM: Round [87] log likelihood: -4814.120657
EM: Round [88] log likelihood: -4814.118036
EM: Round [89] log likelihood: -4814.115445
EM: Round [90] log likelihood: -4814.112882
EM: Round [91] log likelihood: -4814.110347
EM: Round [92] log likelihood: -4814.107839
EM: Round [93] log likelihood: -4814.105359
EM: Round [94] log likelihood: -4814.102906
EM: Round [95] log likelihood: -4814.100479
EM: Round [96] log likelihood: -4814.098079
EM: Round [97] log likelihood: -4814.095704
EM: Round [98] log likelihood: -4814.093355
EM: Round [99] log likelihood: -4814.091031
EM: Round [100] log likelihood: -4814.088731
EM: Round [101] log likelihood: -4814.086457
EM: Round [102] log likelihood: -4814.084206
EM: Round [103] log likelihood: -4814.081980
EM: Round [104] log likelihood: -4814.079777
EM: Round [105] log likelihood: -4814.077597
EM: Round [106] log likelihood: -4814.075441
EM: Round [107] log likelihood: -4814.073307
EM: Round [108] log likelihood: -4814.071195
EM: Round [109] log likelihood: -4814.069106
EM: Round [110] log likelihood: -4814.067038
EM: Round [111] log likelihood: -4814.064993
EM: Round [112] log likelihood: -4814.062968
EM: Round [113] log likelihood: -4814.060964
EM: Round [114] log likelihood: -4814.058982
EM: Round [115] log likelihood: -4814.057019
EM: Round [116] log likelihood: -4814.055077
EM: Round [117] log likelihood: -4814.053156
EM: Round [118] log likelihood: -4814.051253
EM: Round [119] log likelihood: -4814.049371
EM: Round [120] log likelihood: -4814.047508
EM: Round [121] log likelihood: -4814.045663
EM: Round [122] log likelihood: -4814.043838
EM: Round [123] log likelihood: -4814.042031
EM: Round [124] log likelihood: -4814.040243
EM: Round [125] log likelihood: -4814.038473
EM: Round [126] log likelihood: -4814.036721
EM: Round [127] log likelihood: -4814.034986
EM: Round [128] log likelihood: -4814.033270
EM: Round [129] log likelihood: -4814.031570
EM: Round [130] log likelihood: -4814.029888
EM: Round [131] log likelihood: -4814.028222
EM: Round [132] log likelihood: -4814.026573
EM: Round [133] log likelihood: -4814.024941
EM: Round [134] log likelihood: -4814.023325
EM: Round [135] log likelihood: -4814.021726
EM: Round [136] log likelihood: -4814.020142
EM: Round [137] log likelihood: -4814.018574
EM: Round [138] log likelihood: -4814.017022
EM: Round [139] log likelihood: -4814.015485
EM: Round [140] log likelihood: -4814.013963
EM: Round [141] log likelihood: -4814.012456
EM: Round [142] log likelihood: -4814.010964
EM: Round [143] log likelihood: -4814.009487
EM: Round [144] log likelihood: -4814.008025
EM: Round [145] log likelihood: -4814.006577
EM: Round [146] log likelihood: -4814.005143
EM: Round [147] log likelihood: -4814.003723
EM: Round [148] log likelihood: -4814.002318
EM: Round [149] log likelihood: -4814.000926
EM: Round [150] log likelihood: -4813.999547
EM: Round [151] log likelihood: -4813.998182
EM: Round [152] log likelihood: -4813.996830
EM: Round [153] log likelihood: -4813.995492
EM: Round [154] log likelihood: -4813.994166
EM: Round [155] log likelihood: -4813.992854
EM: Round [156] log likelihood: -4813.991554
EM: Round [157] log likelihood: -4813.990267
EM: Round [158] log likelihood: -4813.988992
EM: Round [159] log likelihood: -4813.987729
EM: Round [160] log likelihood: -4813.986479
EM: Round [161] log likelihood: -4813.985241
EM: Round [162] log likelihood: -4813.984014
EM: Round [163] log likelihood: -4813.982800
EM: Round [164] log likelihood: -4813.981597
EM: Round [165] log likelihood: -4813.980405
EM: Round [166] log likelihood: -4813.979225
EM: Round [167] log likelihood: -4813.978056
EM: Round [168] log likelihood: -4813.976899
EM: Round [169] log likelihood: -4813.975752
EM: Round [170] log likelihood: -4813.974617
EM: Round [171] log likelihood: -4813.973492
EM: Round [172] log likelihood: -4813.972378
EM: Round [173] log likelihood: -4813.971275
EM: Round [174] log likelihood: -4813.970182
EM: Round [175] log likelihood: -4813.969099
EM: Round [176] log likelihood: -4813.968027
EM: Round [177] log likelihood: -4813.966964
EM: Round [178] log likelihood: -4813.965912
EM: Round [179] log likelihood: -4813.964870
EM: Round [180] log likelihood: -4813.963838
EM: Round [181] log likelihood: -4813.962815
EM: Round [182] log likelihood: -4813.961802
EM: Round [183] log likelihood: -4813.960798
EM: Round [184] log likelihood: -4813.959804
EM: Round [185] log likelihood: -4813.958819
EM: Round [186] log likelihood: -4813.957844
EM: Round [187] log likelihood: -4813.956877
EM: Round [188] log likelihood: -4813.955920
EM: Round [189] log likelihood: -4813.954972
EM: Round [190] log likelihood: -4813.954032
EM: Round [191] log likelihood: -4813.953101
EM: Round [192] log likelihood: -4813.952179
EM: Round [193] log likelihood: -4813.951266
EM: Round [194] log likelihood: -4813.950361
EM: Round [195] log likelihood: -4813.949464
EM: Round [196] log likelihood: -4813.948576
EM: Round [197] log likelihood: -4813.947696
EM: Round [198] log likelihood: -4813.946824
EM: Round [199] log likelihood: -4813.945960
EM: Round [200] log likelihood: -4813.945104
EM: Round [201] log likelihood: -4813.944256
EM: Round [202] log likelihood: -4813.943416
EM: Round [203] log likelihood: -4813.942584
EM: Round [204] log likelihood: -4813.941759
EM: Round [205] log likelihood: -4813.940942
EM: Round [206] log likelihood: -4813.940133
EM: Round [207] log likelihood: -4813.939330
EM: Round [208] log likelihood: -4813.938536
EM: Round [209] log likelihood: -4813.937748
EM: Round [210] log likelihood: -4813.936968
EM: Round [211] log likelihood: -4813.936195
EM: Round [212] log likelihood: -4813.935429
EM: Round [213] log likelihood: -4813.934670
EM: Round [214] log likelihood: -4813.933918
EM: Round [215] log likelihood: -4813.933173
EM: Round [216] log likelihood: -4813.932435
EM: Round [217] log likelihood: -4813.931704
EM: Round [218] log likelihood: -4813.930979
EM: Round [219] log likelihood: -4813.930260
EM: Round [220] log likelihood: -4813.929549
EM: Round [221] log likelihood: -4813.928844
EM: Round [222] log likelihood: -4813.928145
EM: Round [223] log likelihood: -4813.927452
EM: Round [224] log likelihood: -4813.926766
EM: Round [225] log likelihood: -4813.926086
EM: Round [226] log likelihood: -4813.925412
EM: Round [227] log likelihood: -4813.924745
EM: Round [228] log likelihood: -4813.924083
EM: Round [229] log likelihood: -4813.923428
EM: Round [230] log likelihood: -4813.922778
EM: Round [231] log likelihood: -4813.922134
EM: Round [232] log likelihood: -4813.921496
EM: Round [233] log likelihood: -4813.920864
EM: Round [234] log likelihood: -4813.920237
EM: Round [235] log likelihood: -4813.919617
EM: Round [236] log likelihood: -4813.919001
EM: Round [237] log likelihood: -4813.918392
EM: Round [238] log likelihood: -4813.917787
EM: Round [239] log likelihood: -4813.917189
EM: Round [240] log likelihood: -4813.916595
EM: Round [241] log likelihood: -4813.916007
EM: Round [242] log likelihood: -4813.915424
EM: Round [243] log likelihood: -4813.914847
EM: Round [244] log likelihood: -4813.914274
EM: Round [245] log likelihood: -4813.913707
EM: Round [246] log likelihood: -4813.913145
EM: Round [247] log likelihood: -4813.912588
EM: Round [248] log likelihood: -4813.912036
EM: Round [249] log likelihood: -4813.911489
EM: Round [250] log likelihood: -4813.910946
EM: Round [251] log likelihood: -4813.910409
EM: Round [252] log likelihood: -4813.909876
EM: Round [253] log likelihood: -4813.909348
EM: Round [254] log likelihood: -4813.908825
EM: Round [255] log likelihood: -4813.908307
EM: Round [256] log likelihood: -4813.907793
EM: Round [257] log likelihood: -4813.907284
EM: Round [258] log likelihood: -4813.906779
EM: Round [259] log likelihood: -4813.906278
EM: Round [260] log likelihood: -4813.905783
EM: Round [261] log likelihood: -4813.905291
EM: Round [262] log likelihood: -4813.904804
EM: Round [263] log likelihood: -4813.904321
EM: Round [264] log likelihood: -4813.903843
EM: Round [265] log likelihood: -4813.903369
EM: Round [266] log likelihood: -4813.902899
EM: Round [267] log likelihood: -4813.902433
EM: Round [268] log likelihood: -4813.901971
EM: Round [269] log likelihood: -4813.901514
EM: Round [270] log likelihood: -4813.901060
EM: Round [271] log likelihood: -4813.900611
EM: Round [272] log likelihood: -4813.900165
EM: Round [273] log likelihood: -4813.899723
EM: Round [274] log likelihood: -4813.899286
EM: Round [275] log likelihood: -4813.898852
EM: Round [276] log likelihood: -4813.898422
EM: Round [277] log likelihood: -4813.897996
EM: Round [278] log likelihood: -4813.897573
EM: Round [279] log likelihood: -4813.897155
EM: Round [280] log likelihood: -4813.896739
EM: Round [281] log likelihood: -4813.896328
EM: Round [282] log likelihood: -4813.895920
EM: Round [283] log likelihood: -4813.895516
EM: Round [284] log likelihood: -4813.895116
EM: Round [285] log likelihood: -4813.894719
EM: Round [286] log likelihood: -4813.894325
EM: Round [287] log likelihood: -4813.893935
EM: Round [288] log likelihood: -4813.893548
EM: Round [289] log likelihood: -4813.893165
EM: Round [290] log likelihood: -4813.892785
EM: Round [291] log likelihood: -4813.892408
EM: Round [292] log likelihood: -4813.892035
EM: Round [293] log likelihood: -4813.891665
EM: Round [294] log likelihood: -4813.891298
EM: Round [295] log likelihood: -4813.890935
EM: Round [296] log likelihood: -4813.890574
EM: Round [297] log likelihood: -4813.890217
EM: Round [298] log likelihood: -4813.889863
EM: Round [299] log likelihood: -4813.889512
EM: Round [300] log likelihood: -4813.889164
EM: Round [301] log likelihood: -4813.888819
EM: Round [302] log likelihood: -4813.888477
EM: Round [303] log likelihood: -4813.888138
EM: Round [304] log likelihood: -4813.887802
EM: Round [305] log likelihood: -4813.887469
EM: Round [306] log likelihood: -4813.887139
EM: Round [307] log likelihood: -4813.886812
EM: Round [308] log likelihood: -4813.886488
EM: Round [309] log likelihood: -4813.886166
EM: Round [310] log likelihood: -4813.885848
EM: Round [311] log likelihood: -4813.885532
EM: Round [312] log likelihood: -4813.885219
EM: Round [313] log likelihood: -4813.884908
EM: Round [314] log likelihood: -4813.884600
EM: Round [315] log likelihood: -4813.884295
EM: Round [316] log likelihood: -4813.883993
EM: Round [317] log likelihood: -4813.883693
EM: Round [318] log likelihood: -4813.883396
EM: Round [319] log likelihood: -4813.883101
EM: Round [320] log likelihood: -4813.882809
EM: Round [321] log likelihood: -4813.882520
EM: Round [322] log likelihood: -4813.882233
EM: Round [323] log likelihood: -4813.881948
EM: Round [324] log likelihood: -4813.881666
EM: Round [325] log likelihood: -4813.881387
EM: Round [326] log likelihood: -4813.881110
EM: Round [327] log likelihood: -4813.880835
EM: Round [328] log likelihood: -4813.880563
EM: Round [329] log likelihood: -4813.880293
EM: Round [330] log likelihood: -4813.880025
EM: Round [331] log likelihood: -4813.879760
EM: Round [332] log likelihood: -4813.879497
EM: Round [333] log likelihood: -4813.879236
EM: Round [334] log likelihood: -4813.878978
EM: Round [335] log likelihood: -4813.878721
EM: Round [336] log likelihood: -4813.878467
EM: Round [337] log likelihood: -4813.878215
EM: Round [338] log likelihood: -4813.877966
EM: Round [339] log likelihood: -4813.877718
EM: Round [340] log likelihood: -4813.877473
EM: Round [341] log likelihood: -4813.877230
EM: Round [342] log likelihood: -4813.876989
EM: Round [343] log likelihood: -4813.876750
EM: Round [344] log likelihood: -4813.876513
EM: Round [345] log likelihood: -4813.876278
EM: Round [346] log likelihood: -4813.876045
EM: Round [347] log likelihood: -4813.875814
EM: Round [348] log likelihood: -4813.875585
EM: Round [349] log likelihood: -4813.875358
EM: Round [350] log likelihood: -4813.875133
EM: Round [351] log likelihood: -4813.874910
EM: Round [352] log likelihood: -4813.874689
EM: Round [353] log likelihood: -4813.874470
EM: Round [354] log likelihood: -4813.874252
EM: Round [355] log likelihood: -4813.874037
EM: Round [356] log likelihood: -4813.873823
EM: Round [357] log likelihood: -4813.873612
EM: Round [358] log likelihood: -4813.873402
EM: Round [359] log likelihood: -4813.873194
EM: Round [360] log likelihood: -4813.872987
EM: Round [361] log likelihood: -4813.872783
EM: Round [362] log likelihood: -4813.872580
EM: Round [363] log likelihood: -4813.872379
EM: Round [364] log likelihood: -4813.872180
EM: Round [365] log likelihood: -4813.871982
EM: Round [366] log likelihood: -4813.871786
EM: Round [367] log likelihood: -4813.871592
EM: Round [368] log likelihood: -4813.871399
EM: Round [369] log likelihood: -4813.871209
EM: Round [370] log likelihood: -4813.871019
EM: Round [371] log likelihood: -4813.870832
EM: Round [372] log likelihood: -4813.870646
EM: Round [373] log likelihood: -4813.870461
EM: Round [374] log likelihood: -4813.870278
EM: Round [375] log likelihood: -4813.870097
EM: Round [376] log likelihood: -4813.869918
EM: Round [377] log likelihood: -4813.869739
EM: Round [378] log likelihood: -4813.869563
EM: Round [379] log likelihood: -4813.869388
EM: Round [380] log likelihood: -4813.869214
EM: Round [381] log likelihood: -4813.869042
EM: Round [382] log likelihood: -4813.868871
EM: Round [383] log likelihood: -4813.868702
EM: Round [384] log likelihood: -4813.868534
EM: Round [385] log likelihood: -4813.868368
EM: Round [386] log likelihood: -4813.868203
EM: Round [387] log likelihood: -4813.868040
EM: Round [388] log likelihood: -4813.867878
EM: Round [389] log likelihood: -4813.867717
EM: Round [390] log likelihood: -4813.867558
EM: Round [391] log likelihood: -4813.867400
EM: Round [392] log likelihood: -4813.867243
EM: Round [393] log likelihood: -4813.867088
EM: Round [394] log likelihood: -4813.866934
EM: Round [395] log likelihood: -4813.866781
EM: Round [396] log likelihood: -4813.866630
EM: Round [397] log likelihood: -4813.866480
EM: Round [398] log likelihood: -4813.866331
EM: Round [399] log likelihood: -4813.866184
EM: Round [400] log likelihood: -4813.866038
EM: Round [401] log likelihood: -4813.865893
EM: Round [402] log likelihood: -4813.865749
EM: Round [403] log likelihood: -4813.865607
EM: Round [404] log likelihood: -4813.865465
EM: Round [405] log likelihood: -4813.865325
EM: Round [406] log likelihood: -4813.865186
EM: Round [407] log likelihood: -4813.865049
EM: Round [408] log likelihood: -4813.864912
EM: Round [409] log likelihood: -4813.864777
EM: Round [410] log likelihood: -4813.864643
EM: Round [411] log likelihood: -4813.864510
EM: Round [412] log likelihood: -4813.864378
EM: Round [413] log likelihood: -4813.864247
EM: Round [414] log likelihood: -4813.864118
EM: Round [415] log likelihood: -4813.863989
EM: Round [416] log likelihood: -4813.863862
EM: Round [417] log likelihood: -4813.863735
EM: Round [418] log likelihood: -4813.863610
EM: Round [419] log likelihood: -4813.863486
EM: Round [420] log likelihood: -4813.863363
EM: Round [421] log likelihood: -4813.863240
EM: Round [422] log likelihood: -4813.863119
EM: Round [423] log likelihood: -4813.862999
EM: Round [424] log likelihood: -4813.862880
EM: Round [425] log likelihood: -4813.862762
EM: Round [426] log likelihood: -4813.862645
EM: Round [427] log likelihood: -4813.862529
EM: Round [428] log likelihood: -4813.862414
EM: Round [429] log likelihood: -4813.862300
EM: Round [430] log likelihood: -4813.862187
EM: Round [431] log likelihood: -4813.862075
EM: Round [432] log likelihood: -4813.861964
EM: Round [433] log likelihood: -4813.861854
EM: Round [434] log likelihood: -4813.861745
EM: Round [435] log likelihood: -4813.861636
EM: Round [436] log likelihood: -4813.861529
EM: Round [437] log likelihood: -4813.861422
EM: Round [438] log likelihood: -4813.861317
EM: Round [439] log likelihood: -4813.861212
EM: Round [440] log likelihood: -4813.861108
EM: Round [441] log likelihood: -4813.861005
EM: Round [442] log likelihood: -4813.860903
EM: Round [443] log likelihood: -4813.860802
EM: Round [444] log likelihood: -4813.860702
EM: Round [445] log likelihood: -4813.860603
EM: Stopping iterations at round 445 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam into /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords > /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.frag_coords > /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.hYsFMavD4O/fi_workdir/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -4623.690267
EM: Round [1] log likelihood: -4616.711026
EM: Round [2] log likelihood: -4615.778280
EM: Round [3] log likelihood: -4615.680244
EM: Round [4] log likelihood: -4615.665365
EM: Round [5] log likelihood: -4615.657152
EM: Round [6] log likelihood: -4615.649533
EM: Round [7] log likelihood: -4615.642066
EM: Round [8] log likelihood: -4615.634720
EM: Round [9] log likelihood: -4615.627488
EM: Round [10] log likelihood: -4615.620369
EM: Round [11] log likelihood: -4615.613358
EM: Round [12] log likelihood: -4615.606455
EM: Round [13] log likelihood: -4615.599657
EM: Round [14] log likelihood: -4615.592961
EM: Round [15] log likelihood: -4615.586366
EM: Round [16] log likelihood: -4615.579868
EM: Round [17] log likelihood: -4615.573467
EM: Round [18] log likelihood: -4615.567159
EM: Round [19] log likelihood: -4615.560944
EM: Round [20] log likelihood: -4615.554818
EM: Round [21] log likelihood: -4615.548781
EM: Round [22] log likelihood: -4615.542831
EM: Round [23] log likelihood: -4615.536965
EM: Round [24] log likelihood: -4615.531182
EM: Round [25] log likelihood: -4615.525481
EM: Round [26] log likelihood: -4615.519860
EM: Round [27] log likelihood: -4615.514317
EM: Round [28] log likelihood: -4615.508850
EM: Round [29] log likelihood: -4615.503459
EM: Round [30] log likelihood: -4615.498142
EM: Round [31] log likelihood: -4615.492897
EM: Round [32] log likelihood: -4615.487723
EM: Round [33] log likelihood: -4615.482619
EM: Round [34] log likelihood: -4615.477584
EM: Round [35] log likelihood: -4615.472616
EM: Round [36] log likelihood: -4615.467713
EM: Round [37] log likelihood: -4615.462876
EM: Round [38] log likelihood: -4615.458102
EM: Round [39] log likelihood: -4615.453391
EM: Round [40] log likelihood: -4615.448741
EM: Round [41] log likelihood: -4615.444152
EM: Round [42] log likelihood: -4615.439621
EM: Round [43] log likelihood: -4615.435149
EM: Round [44] log likelihood: -4615.430735
EM: Round [45] log likelihood: -4615.426376
EM: Round [46] log likelihood: -4615.422073
EM: Round [47] log likelihood: -4615.417824
EM: Round [48] log likelihood: -4615.413629
EM: Round [49] log likelihood: -4615.409486
EM: Round [50] log likelihood: -4615.405395
EM: Round [51] log likelihood: -4615.401354
EM: Round [52] log likelihood: -4615.397364
EM: Round [53] log likelihood: -4615.393423
EM: Round [54] log likelihood: -4615.389530
EM: Round [55] log likelihood: -4615.385685
EM: Round [56] log likelihood: -4615.381887
EM: Round [57] log likelihood: -4615.378135
EM: Round [58] log likelihood: -4615.374428
EM: Round [59] log likelihood: -4615.370766
EM: Round [60] log likelihood: -4615.367148
EM: Round [61] log likelihood: -4615.363573
EM: Round [62] log likelihood: -4615.360041
EM: Round [63] log likelihood: -4615.356551
EM: Round [64] log likelihood: -4615.353102
EM: Round [65] log likelihood: -4615.349694
EM: Round [66] log likelihood: -4615.346325
EM: Round [67] log likelihood: -4615.342997
EM: Round [68] log likelihood: -4615.339707
EM: Round [69] log likelihood: -4615.336455
EM: Round [70] log likelihood: -4615.333242
EM: Round [71] log likelihood: -4615.330065
EM: Round [72] log likelihood: -4615.326925
EM: Round [73] log likelihood: -4615.323821
EM: Round [74] log likelihood: -4615.320753
EM: Round [75] log likelihood: -4615.317719
EM: Round [76] log likelihood: -4615.314721
EM: Round [77] log likelihood: -4615.311756
EM: Round [78] log likelihood: -4615.308825
EM: Round [79] log likelihood: -4615.305927
EM: Round [80] log likelihood: -4615.303061
EM: Round [81] log likelihood: -4615.300228
EM: Round [82] log likelihood: -4615.297427
EM: Round [83] log likelihood: -4615.294656
EM: Round [84] log likelihood: -4615.291917
EM: Round [85] log likelihood: -4615.289208
EM: Round [86] log likelihood: -4615.286529
EM: Round [87] log likelihood: -4615.283879
EM: Round [88] log likelihood: -4615.281259
EM: Round [89] log likelihood: -4615.278668
EM: Round [90] log likelihood: -4615.276105
EM: Round [91] log likelihood: -4615.273570
EM: Round [92] log likelihood: -4615.271062
EM: Round [93] log likelihood: -4615.268582
EM: Round [94] log likelihood: -4615.266129
EM: Round [95] log likelihood: -4615.263702
EM: Round [96] log likelihood: -4615.261301
EM: Round [97] log likelihood: -4615.258927
EM: Round [98] log likelihood: -4615.256577
EM: Round [99] log likelihood: -4615.254253
EM: Round [100] log likelihood: -4615.251954
EM: Round [101] log likelihood: -4615.249680
EM: Round [102] log likelihood: -4615.247429
EM: Round [103] log likelihood: -4615.245203
EM: Round [104] log likelihood: -4615.243000
EM: Round [105] log likelihood: -4615.240820
EM: Round [106] log likelihood: -4615.238664
EM: Round [107] log likelihood: -4615.236530
EM: Round [108] log likelihood: -4615.234418
EM: Round [109] log likelihood: -4615.232329
EM: Round [110] log likelihood: -4615.230261
EM: Round [111] log likelihood: -4615.228215
EM: Round [112] log likelihood: -4615.226191
EM: Round [113] log likelihood: -4615.224187
EM: Round [114] log likelihood: -4615.222204
EM: Round [115] log likelihood: -4615.220242
EM: Round [116] log likelihood: -4615.218300
EM: Round [117] log likelihood: -4615.216378
EM: Round [118] log likelihood: -4615.214476
EM: Round [119] log likelihood: -4615.212594
EM: Round [120] log likelihood: -4615.210730
EM: Round [121] log likelihood: -4615.208886
EM: Round [122] log likelihood: -4615.207061
EM: Round [123] log likelihood: -4615.205254
EM: Round [124] log likelihood: -4615.203466
EM: Round [125] log likelihood: -4615.201696
EM: Round [126] log likelihood: -4615.199944
EM: Round [127] log likelihood: -4615.198209
EM: Round [128] log likelihood: -4615.196492
EM: Round [129] log likelihood: -4615.194793
EM: Round [130] log likelihood: -4615.193110
EM: Round [131] log likelihood: -4615.191445
EM: Round [132] log likelihood: -4615.189796
EM: Round [133] log likelihood: -4615.188164
EM: Round [134] log likelihood: -4615.186548
EM: Round [135] log likelihood: -4615.184948
EM: Round [136] log likelihood: -4615.183365
EM: Round [137] log likelihood: -4615.181797
EM: Round [138] log likelihood: -4615.180244
EM: Round [139] log likelihood: -4615.178707
EM: Round [140] log likelihood: -4615.177186
EM: Round [141] log likelihood: -4615.175679
EM: Round [142] log likelihood: -4615.174187
EM: Round [143] log likelihood: -4615.172710
EM: Round [144] log likelihood: -4615.171248
EM: Round [145] log likelihood: -4615.169800
EM: Round [146] log likelihood: -4615.168366
EM: Round [147] log likelihood: -4615.166946
EM: Round [148] log likelihood: -4615.165540
EM: Round [149] log likelihood: -4615.164148
EM: Round [150] log likelihood: -4615.162770
EM: Round [151] log likelihood: -4615.161405
EM: Round [152] log likelihood: -4615.160053
EM: Round [153] log likelihood: -4615.158715
EM: Round [154] log likelihood: -4615.157389
EM: Round [155] log likelihood: -4615.156077
EM: Round [156] log likelihood: -4615.154777
EM: Round [157] log likelihood: -4615.153489
EM: Round [158] log likelihood: -4615.152215
EM: Round [159] log likelihood: -4615.150952
EM: Round [160] log likelihood: -4615.149702
EM: Round [161] log likelihood: -4615.148463
EM: Round [162] log likelihood: -4615.147237
EM: Round [163] log likelihood: -4615.146022
EM: Round [164] log likelihood: -4615.144819
EM: Round [165] log likelihood: -4615.143628
EM: Round [166] log likelihood: -4615.142448
EM: Round [167] log likelihood: -4615.141279
EM: Round [168] log likelihood: -4615.140122
EM: Round [169] log likelihood: -4615.138975
EM: Round [170] log likelihood: -4615.137840
EM: Round [171] log likelihood: -4615.136715
EM: Round [172] log likelihood: -4615.135601
EM: Round [173] log likelihood: -4615.134497
EM: Round [174] log likelihood: -4615.133405
EM: Round [175] log likelihood: -4615.132322
EM: Round [176] log likelihood: -4615.131250
EM: Round [177] log likelihood: -4615.130187
EM: Round [178] log likelihood: -4615.129135
EM: Round [179] log likelihood: -4615.128093
EM: Round [180] log likelihood: -4615.127060
EM: Round [181] log likelihood: -4615.126038
EM: Round [182] log likelihood: -4615.125025
EM: Round [183] log likelihood: -4615.124021
EM: Round [184] log likelihood: -4615.123027
EM: Round [185] log likelihood: -4615.122042
EM: Round [186] log likelihood: -4615.121067
EM: Round [187] log likelihood: -4615.120100
EM: Round [188] log likelihood: -4615.119143
EM: Round [189] log likelihood: -4615.118194
EM: Round [190] log likelihood: -4615.117255
EM: Round [191] log likelihood: -4615.116324
EM: Round [192] log likelihood: -4615.115402
EM: Round [193] log likelihood: -4615.114488
EM: Round [194] log likelihood: -4615.113583
EM: Round [195] log likelihood: -4615.112687
EM: Round [196] log likelihood: -4615.111798
EM: Round [197] log likelihood: -4615.110918
EM: Round [198] log likelihood: -4615.110047
EM: Round [199] log likelihood: -4615.109183
EM: Round [200] log likelihood: -4615.108327
EM: Round [201] log likelihood: -4615.107479
EM: Round [202] log likelihood: -4615.106639
EM: Round [203] log likelihood: -4615.105807
EM: Round [204] log likelihood: -4615.104982
EM: Round [205] log likelihood: -4615.104165
EM: Round [206] log likelihood: -4615.103355
EM: Round [207] log likelihood: -4615.102553
EM: Round [208] log likelihood: -4615.101759
EM: Round [209] log likelihood: -4615.100971
EM: Round [210] log likelihood: -4615.100191
EM: Round [211] log likelihood: -4615.099418
EM: Round [212] log likelihood: -4615.098652
EM: Round [213] log likelihood: -4615.097893
EM: Round [214] log likelihood: -4615.097141
EM: Round [215] log likelihood: -4615.096396
EM: Round [216] log likelihood: -4615.095658
EM: Round [217] log likelihood: -4615.094926
EM: Round [218] log likelihood: -4615.094202
EM: Round [219] log likelihood: -4615.093483
EM: Round [220] log likelihood: -4615.092772
EM: Round [221] log likelihood: -4615.092066
EM: Round [222] log likelihood: -4615.091368
EM: Round [223] log likelihood: -4615.090675
EM: Round [224] log likelihood: -4615.089989
EM: Round [225] log likelihood: -4615.089309
EM: Round [226] log likelihood: -4615.088635
EM: Round [227] log likelihood: -4615.087968
EM: Round [228] log likelihood: -4615.087306
EM: Round [229] log likelihood: -4615.086650
EM: Round [230] log likelihood: -4615.086001
EM: Round [231] log likelihood: -4615.085357
EM: Round [232] log likelihood: -4615.084719
EM: Round [233] log likelihood: -4615.084087
EM: Round [234] log likelihood: -4615.083460
EM: Round [235] log likelihood: -4615.082839
EM: Round [236] log likelihood: -4615.082224
EM: Round [237] log likelihood: -4615.081614
EM: Round [238] log likelihood: -4615.081010
EM: Round [239] log likelihood: -4615.080411
EM: Round [240] log likelihood: -4615.079818
EM: Round [241] log likelihood: -4615.079230
EM: Round [242] log likelihood: -4615.078647
EM: Round [243] log likelihood: -4615.078070
EM: Round [244] log likelihood: -4615.077497
EM: Round [245] log likelihood: -4615.076930
EM: Round [246] log likelihood: -4615.076368
EM: Round [247] log likelihood: -4615.075811
EM: Round [248] log likelihood: -4615.075259
EM: Round [249] log likelihood: -4615.074712
EM: Round [250] log likelihood: -4615.074169
EM: Round [251] log likelihood: -4615.073632
EM: Round [252] log likelihood: -4615.073099
EM: Round [253] log likelihood: -4615.072571
EM: Round [254] log likelihood: -4615.072048
EM: Round [255] log likelihood: -4615.071530
EM: Round [256] log likelihood: -4615.071016
EM: Round [257] log likelihood: -4615.070506
EM: Round [258] log likelihood: -4615.070002
EM: Round [259] log likelihood: -4615.069501
EM: Round [260] log likelihood: -4615.069005
EM: Round [261] log likelihood: -4615.068514
EM: Round [262] log likelihood: -4615.068027
EM: Round [263] log likelihood: -4615.067544
EM: Round [264] log likelihood: -4615.067066
EM: Round [265] log likelihood: -4615.066592
EM: Round [266] log likelihood: -4615.066122
EM: Round [267] log likelihood: -4615.065656
EM: Round [268] log likelihood: -4615.065194
EM: Round [269] log likelihood: -4615.064737
EM: Round [270] log likelihood: -4615.064283
EM: Round [271] log likelihood: -4615.063834
EM: Round [272] log likelihood: -4615.063388
EM: Round [273] log likelihood: -4615.062946
EM: Round [274] log likelihood: -4615.062509
EM: Round [275] log likelihood: -4615.062075
EM: Round [276] log likelihood: -4615.061645
EM: Round [277] log likelihood: -4615.061219
EM: Round [278] log likelihood: -4615.060796
EM: Round [279] log likelihood: -4615.060377
EM: Round [280] log likelihood: -4615.059962
EM: Round [281] log likelihood: -4615.059551
EM: Round [282] log likelihood: -4615.059143
EM: Round [283] log likelihood: -4615.058739
EM: Round [284] log likelihood: -4615.058338
EM: Round [285] log likelihood: -4615.057941
EM: Round [286] log likelihood: -4615.057548
EM: Round [287] log likelihood: -4615.057158
EM: Round [288] log likelihood: -4615.056771
EM: Round [289] log likelihood: -4615.056388
EM: Round [290] log likelihood: -4615.056008
EM: Round [291] log likelihood: -4615.055631
EM: Round [292] log likelihood: -4615.055258
EM: Round [293] log likelihood: -4615.054888
EM: Round [294] log likelihood: -4615.054521
EM: Round [295] log likelihood: -4615.054157
EM: Round [296] log likelihood: -4615.053797
EM: Round [297] log likelihood: -4615.053440
EM: Round [298] log likelihood: -4615.053086
EM: Round [299] log likelihood: -4615.052735
EM: Round [300] log likelihood: -4615.052387
EM: Round [301] log likelihood: -4615.052042
EM: Round [302] log likelihood: -4615.051700
EM: Round [303] log likelihood: -4615.051361
EM: Round [304] log likelihood: -4615.051025
EM: Round [305] log likelihood: -4615.050692
EM: Round [306] log likelihood: -4615.050362
EM: Round [307] log likelihood: -4615.050035
EM: Round [308] log likelihood: -4615.049711
EM: Round [309] log likelihood: -4615.049389
EM: Round [310] log likelihood: -4615.049070
EM: Round [311] log likelihood: -4615.048755
EM: Round [312] log likelihood: -4615.048441
EM: Round [313] log likelihood: -4615.048131
EM: Round [314] log likelihood: -4615.047823
EM: Round [315] log likelihood: -4615.047518
EM: Round [316] log likelihood: -4615.047216
EM: Round [317] log likelihood: -4615.046916
EM: Round [318] log likelihood: -4615.046619
EM: Round [319] log likelihood: -4615.046324
EM: Round [320] log likelihood: -4615.046032
EM: Round [321] log likelihood: -4615.045743
EM: Round [322] log likelihood: -4615.045456
EM: Round [323] log likelihood: -4615.045171
EM: Round [324] log likelihood: -4615.044889
EM: Round [325] log likelihood: -4615.044610
EM: Round [326] log likelihood: -4615.044333
EM: Round [327] log likelihood: -4615.044058
EM: Round [328] log likelihood: -4615.043786
EM: Round [329] log likelihood: -4615.043516
EM: Round [330] log likelihood: -4615.043248
EM: Round [331] log likelihood: -4615.042983
EM: Round [332] log likelihood: -4615.042720
EM: Round [333] log likelihood: -4615.042459
EM: Round [334] log likelihood: -4615.042200
EM: Round [335] log likelihood: -4615.041944
EM: Round [336] log likelihood: -4615.041690
EM: Round [337] log likelihood: -4615.041438
EM: Round [338] log likelihood: -4615.041189
EM: Round [339] log likelihood: -4615.040941
EM: Round [340] log likelihood: -4615.040696
EM: Round [341] log likelihood: -4615.040453
EM: Round [342] log likelihood: -4615.040211
EM: Round [343] log likelihood: -4615.039972
EM: Round [344] log likelihood: -4615.039735
EM: Round [345] log likelihood: -4615.039500
EM: Round [346] log likelihood: -4615.039268
EM: Round [347] log likelihood: -4615.039037
EM: Round [348] log likelihood: -4615.038808
EM: Round [349] log likelihood: -4615.038581
EM: Round [350] log likelihood: -4615.038356
EM: Round [351] log likelihood: -4615.038133
EM: Round [352] log likelihood: -4615.037912
EM: Round [353] log likelihood: -4615.037693
EM: Round [354] log likelihood: -4615.037475
EM: Round [355] log likelihood: -4615.037260
EM: Round [356] log likelihood: -4615.037046
EM: Round [357] log likelihood: -4615.036835
EM: Round [358] log likelihood: -4615.036625
EM: Round [359] log likelihood: -4615.036416
EM: Round [360] log likelihood: -4615.036210
EM: Round [361] log likelihood: -4615.036006
EM: Round [362] log likelihood: -4615.035803
EM: Round [363] log likelihood: -4615.035602
EM: Round [364] log likelihood: -4615.035403
EM: Round [365] log likelihood: -4615.035205
EM: Round [366] log likelihood: -4615.035009
EM: Round [367] log likelihood: -4615.034815
EM: Round [368] log likelihood: -4615.034622
EM: Round [369] log likelihood: -4615.034431
EM: Round [370] log likelihood: -4615.034242
EM: Round [371] log likelihood: -4615.034055
EM: Round [372] log likelihood: -4615.033869
EM: Round [373] log likelihood: -4615.033684
EM: Round [374] log likelihood: -4615.033501
EM: Round [375] log likelihood: -4615.033320
EM: Round [376] log likelihood: -4615.033140
EM: Round [377] log likelihood: -4615.032962
EM: Round [378] log likelihood: -4615.032786
EM: Round [379] log likelihood: -4615.032610
EM: Round [380] log likelihood: -4615.032437
EM: Round [381] log likelihood: -4615.032265
EM: Round [382] log likelihood: -4615.032094
EM: Round [383] log likelihood: -4615.031925
EM: Round [384] log likelihood: -4615.031757
EM: Round [385] log likelihood: -4615.031591
EM: Round [386] log likelihood: -4615.031426
EM: Round [387] log likelihood: -4615.031262
EM: Round [388] log likelihood: -4615.031100
EM: Round [389] log likelihood: -4615.030940
EM: Round [390] log likelihood: -4615.030780
EM: Round [391] log likelihood: -4615.030623
EM: Round [392] log likelihood: -4615.030466
EM: Round [393] log likelihood: -4615.030311
EM: Round [394] log likelihood: -4615.030157
EM: Round [395] log likelihood: -4615.030004
EM: Round [396] log likelihood: -4615.029853
EM: Round [397] log likelihood: -4615.029703
EM: Round [398] log likelihood: -4615.029554
EM: Round [399] log likelihood: -4615.029407
EM: Round [400] log likelihood: -4615.029261
EM: Round [401] log likelihood: -4615.029116
EM: Round [402] log likelihood: -4615.028972
EM: Round [403] log likelihood: -4615.028829
EM: Round [404] log likelihood: -4615.028688
EM: Round [405] log likelihood: -4615.028548
EM: Round [406] log likelihood: -4615.028409
EM: Round [407] log likelihood: -4615.028272
EM: Round [408] log likelihood: -4615.028135
EM: Round [409] log likelihood: -4615.028000
EM: Round [410] log likelihood: -4615.027866
EM: Round [411] log likelihood: -4615.027733
EM: Round [412] log likelihood: -4615.027601
EM: Round [413] log likelihood: -4615.027470
EM: Round [414] log likelihood: -4615.027340
EM: Round [415] log likelihood: -4615.027212
EM: Round [416] log likelihood: -4615.027084
EM: Round [417] log likelihood: -4615.026958
EM: Round [418] log likelihood: -4615.026833
EM: Round [419] log likelihood: -4615.026709
EM: Round [420] log likelihood: -4615.026585
EM: Round [421] log likelihood: -4615.026463
EM: Round [422] log likelihood: -4615.026342
EM: Round [423] log likelihood: -4615.026222
EM: Round [424] log likelihood: -4615.026103
EM: Round [425] log likelihood: -4615.025985
EM: Round [426] log likelihood: -4615.025868
EM: Round [427] log likelihood: -4615.025752
EM: Round [428] log likelihood: -4615.025637
EM: Round [429] log likelihood: -4615.025523
EM: Round [430] log likelihood: -4615.025410
EM: Round [431] log likelihood: -4615.025298
EM: Round [432] log likelihood: -4615.025187
EM: Round [433] log likelihood: -4615.025077
EM: Round [434] log likelihood: -4615.024967
EM: Round [435] log likelihood: -4615.024859
EM: Round [436] log likelihood: -4615.024752
EM: Round [437] log likelihood: -4615.024645
EM: Round [438] log likelihood: -4615.024540
EM: Round [439] log likelihood: -4615.024435
EM: Round [440] log likelihood: -4615.024331
EM: Round [441] log likelihood: -4615.024228
EM: Round [442] log likelihood: -4615.024126
EM: Round [443] log likelihood: -4615.024025
EM: Round [444] log likelihood: -4615.023925
EM: Round [445] log likelihood: -4615.023825
EM: Stopping iterations at round 445 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1_1.fastp.fastq.gz: 296338986
Warning - not locating file: /tmp/nxf.hYsFMavD4O/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000226240.2]
WARNING, no entry stored in dbm for [ENSG00000254560.6]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000249909.1]
WARNING, no entry stored in dbm for [ENSG00000123201.14]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
ls: cannot access 'IGV_inputs': No such file or directory