File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d3bf23d4943a02b9e699ec341cfe6e/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:17:35
                             Started mapping on |	Jun 08 10:24:38
                                    Finished on |	Jun 08 11:56:16
       Mapping speed, Million of reads per hour |	194.04

                          Number of input reads |	296338986
                      Average input read length |	260
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285584002
                        Uniquely mapped reads % |	96.37%
                          Average mapped length |	260.06
                       Number of splices: Total |	327891921
            Number of splices: Annotated (sjdb) |	322745049
                       Number of splices: GT/AG |	324465547
                       Number of splices: GC/AG |	2217191
                       Number of splices: AT/AC |	243289
               Number of splices: Non-canonical |	965894
                      Mismatch rate per base, % |	0.17%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.87
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.77
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7334961
             % of reads mapped to multiple loci |	2.48%
        Number of reads mapped to too many loci |	436353
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2270013
                 % of reads unmapped: too short |	0.77%
                Number of reads unmapped: other |	713657
                     % of reads unmapped: other |	0.24%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%