File Info

Filename
aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/c50e02f5baf80760d8092c2b427a64/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:40:15
                             Started mapping on |	Jun 08 07:42:16
                                    Finished on |	Jun 08 08:41:22
       Mapping speed, Million of reads per hour |	301.28

                          Number of input reads |	296760770
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	277227949
                        Uniquely mapped reads % |	93.42%
                          Average mapped length |	244.39
                       Number of splices: Total |	289031381
            Number of splices: Annotated (sjdb) |	285217215
                       Number of splices: GT/AG |	286295851
                       Number of splices: GC/AG |	1961861
                       Number of splices: AT/AC |	251453
               Number of splices: Non-canonical |	522216
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.59
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	14576782
             % of reads mapped to multiple loci |	4.91%
        Number of reads mapped to too many loci |	269460
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	703142
       % of reads unmapped: too many mismatches |	0.24%
            Number of reads unmapped: too short |	1953183
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	240218
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3159382
                            % of chimeric reads |	1.06%