File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/dea502e47f88e5b21e82525f7e7836/.command.log
Size
3.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/f0725852afa84a7709f2f6d9c45975/aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/dea502e47f88e5b21e82525f7e7836/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/0f54c98c61207c4a03769dad3276fc/aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/dea502e47f88e5b21e82525f7e7836/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AC007663.1--ESS2
starfusion
arriba
CMTR1--AIF1
starfusion
arriba
PDCD6--PLEKHG4B
starfusion
arriba
AC013268.1--MALL
starfusion
PDCD6--LRRC14B
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
TVP23C--CDRT4
starfusion
arriba
AL079338.1--LRRC41
starfusion
CNTNAP3C--BX005040.4
starfusion
STX16--NPEPL1
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing AC007663.1--ESS2:   0%|          | 0/12 [00:00<?, ?it/s]
Processing AC007663.1--ESS2:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]
Processing CMTR1--AIF1:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]     
Processing CMTR1--AIF1:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]
Processing PDCD6--PLEKHG4B:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]
Processing PDCD6--PLEKHG4B:  25%|██▌       | 3/12 [00:00<00:00,  9.55it/s]
Processing AC013268.1--MALL:  25%|██▌       | 3/12 [00:00<00:00,  9.55it/s]
Processing AC013268.1--MALL:  33%|███▎      | 4/12 [00:00<00:00,  9.58it/s]
Processing PDCD6--LRRC14B:  33%|███▎      | 4/12 [00:00<00:00,  9.58it/s]  
Processing PDCD6--LRRC14B:  42%|████▏     | 5/12 [00:00<00:00,  9.60it/s]
Processing TLK2P1--AC110079.1:  42%|████▏     | 5/12 [00:00<00:00,  9.60it/s]
Processing TLK2P1--AC110079.1:  50%|█████     | 6/12 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  50%|█████     | 6/12 [00:00<00:00,  9.61it/s]  
Processing TLK2--AC240565.1:  58%|█████▊    | 7/12 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 7/12 [00:00<00:00,  9.62it/s]   
Processing TVP23C--CDRT4:  67%|██████▋   | 8/12 [00:00<00:00,  9.62it/s]
Processing AL079338.1--LRRC41:  67%|██████▋   | 8/12 [00:00<00:00,  9.62it/s]
Processing AL079338.1--LRRC41:  75%|███████▌  | 9/12 [00:00<00:00,  9.63it/s]
Processing CNTNAP3C--BX005040.4:  75%|███████▌  | 9/12 [00:00<00:00,  9.63it/s]
Processing CNTNAP3C--BX005040.4:  83%|████████▎ | 10/12 [00:01<00:00,  9.63it/s]
Processing STX16--NPEPL1:  83%|████████▎ | 10/12 [00:01<00:00,  9.63it/s]       
Processing STX16--NPEPL1:  92%|█████████▏| 11/12 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  92%|█████████▏| 11/12 [00:01<00:00,  9.63it/s] 
Processing KLRC4--KLRK1: 100%|██████████| 12/12 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 12/12 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory