Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/b4e890523bfb9e69808e2c61e712fa/aih-tih-sc-992d78-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/5d943541b4667d59a3916b6dc34b13/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/5d943541b4667d59a3916b6dc34b13/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/03e424748b7aa99a8472defaae2054/aih-tih-sc-992d78-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory