Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/14bd113133853df985a155f5623d4a/fi_workdir/aih-tih-sc-28eb14-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/ac4a0b3c7d3f7eed35a65aa2c286f4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/ac4a0b3c7d3f7eed35a65aa2c286f4/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 15669
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 15669
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:15669
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC069120.1--LETM2 HAVANA gene 13109 26205 . + . FI_gene_label "LETM2^ENSG00000165046.13" ; ID "AC069120.1--LETM2^LETM2^ENSG00000165046.13" ; ccdsid "CCDS6106.1" ; exon_id "ENSE00003463135.1" ; exon_number 3 ; gene_id "AC069120.1--LETM2^LETM2^ENSG00000165046.13" ; gene_name LETM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165059.6" ; havana_transcript "OTTHUMT00000381633.4" ; hgnc_id "HGNC:14648" ; level 2 ; orig_coord_info "chr8,38392636,38392995,+" ; protein_id "ENSP00000297720.5" ; tag basic CCDS ; transcript_id "AC069120.1--LETM2^ENST00000297720.9" ; transcript_name "LETM2-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC069120.1--LETM2 HAVANA mRNA 13109 26205 . + . FI_gene_label "LETM2^ENSG00000165046.13" ; ID "AC069120.1--LETM2^ENST00000297720.9" ; Parent "AC069120.1--LETM2^LETM2^ENSG00000165046.13" ; ccdsid "CCDS6106.1" ; exon_id "ENSE00003463135.1" ; exon_number 3 ; gene_id "AC069120.1--LETM2^LETM2^ENSG00000165046.13" ; gene_name LETM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165059.6" ; havana_transcript "OTTHUMT00000381633.4" ; hgnc_id "HGNC:14648" ; level 2 ; orig_coord_info "chr8,38392636,38392995,+" ; protein_id "ENSP00000297720.5" ; tag basic CCDS ; transcript_id "AC069120.1--LETM2^ENST00000297720.9" ; transcript_name "LETM2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC108704.1--SLC15A4 HAVANA gene 4745 16587 . + . FI_gene_label "SLC15A4^ENSG00000139370.12" ; ID "AC108704.1--SLC15A4^SLC15A4^ENSG00000139370.12" ; ccdsid "CCDS9264.1" ; exon_id "ENSE00001203283.5" ; exon_number 1 ; gene_id "AC108704.1--SLC15A4^SLC15A4^ENSG00000139370.12" ; gene_name SLC15A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168415.4" ; havana_transcript "OTTHUMT00000399663.3" ; hgnc_id "HGNC:23090" ; level 2 ; orig_coord_info "chr12,128823398,128823943,-" ; protein_id "ENSP00000266771.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC108704.1--SLC15A4^ENST00000266771.10" ; transcript_name "SLC15A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC108704.1--SLC15A4 HAVANA mRNA 4745 16587 . + . FI_gene_label "SLC15A4^ENSG00000139370.12" ; ID "AC108704.1--SLC15A4^ENST00000266771.10" ; Parent "AC108704.1--SLC15A4^SLC15A4^ENSG00000139370.12" ; ccdsid "CCDS9264.1" ; exon_id "ENSE00001203283.5" ; exon_number 1 ; gene_id "AC108704.1--SLC15A4^SLC15A4^ENSG00000139370.12" ; gene_name SLC15A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168415.4" ; havana_transcript "OTTHUMT00000399663.3" ; hgnc_id "HGNC:23090" ; level 2 ; orig_coord_info "chr12,128823398,128823943,-" ; protein_id "ENSP00000266771.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC108704.1--SLC15A4^ENST00000266771.10" ; transcript_name "SLC15A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP000867.4--ADGRA2 HAVANA gene 5383 22649 . + . FI_gene_label "ADGRA2^ENSG00000020181.18" ; ID "AP000867.4--ADGRA2^ADGRA2^ENSG00000020181.18" ; exon_id "ENSE00001666511.1" ; exon_number 1 ; gene_id "AP000867.4--ADGRA2^ADGRA2^ENSG00000020181.18" ; gene_name ADGRA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156182.6" ; havana_transcript "OTTHUMT00000343332.3" ; hgnc_id "HGNC:17849" ; level 2 ; orig_coord_info "chr8,37797269,37797534,+" ; protein_id "ENSP00000323508.7" ; tag basic ; transcript_id "AP000867.4--ADGRA2^ENST00000315215.11" ; transcript_name "ADGRA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AP000867.4--ADGRA2 HAVANA mRNA 5383 22649 . + . FI_gene_label "ADGRA2^ENSG00000020181.18" ; ID "AP000867.4--ADGRA2^ENST00000315215.11" ; Parent "AP000867.4--ADGRA2^ADGRA2^ENSG00000020181.18" ; exon_id "ENSE00001666511.1" ; exon_number 1 ; gene_id "AP000867.4--ADGRA2^ADGRA2^ENSG00000020181.18" ; gene_name ADGRA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156182.6" ; havana_transcript "OTTHUMT00000343332.3" ; hgnc_id "HGNC:17849" ; level 2 ; orig_coord_info "chr8,37797269,37797534,+" ; protein_id "ENSP00000323508.7" ; tag basic ; transcript_id "AP000867.4--ADGRA2^ENST00000315215.11" ; transcript_name "ADGRA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AP000867.4--INTS4 HAVANA gene 4220 33500 . + . FI_gene_label "INTS4^ENSG00000149262.17" ; ID "AP000867.4--INTS4^INTS4^ENSG00000149262.17" ; exon_id "ENSE00001374341.1" ; exon_number 1 ; gene_id "AP000867.4--INTS4^INTS4^ENSG00000149262.17" ; gene_name INTS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166629.3" ; havana_transcript "OTTHUMT00000390926.1" ; hgnc_id "HGNC:25048" ; level 2 ; orig_coord_info "chr11,77994590,77994643,-" ; protein_id "ENSP00000407787.2" ; transcript_id "AP000867.4--INTS4^ENST00000433818.6" ; transcript_name "INTS4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
AP000867.4--INTS4 HAVANA mRNA 4220 33500 . + . FI_gene_label "INTS4^ENSG00000149262.17" ; ID "AP000867.4--INTS4^ENST00000433818.6" ; Parent "AP000867.4--INTS4^INTS4^ENSG00000149262.17" ; exon_id "ENSE00001374341.1" ; exon_number 1 ; gene_id "AP000867.4--INTS4^INTS4^ENSG00000149262.17" ; gene_name INTS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166629.3" ; havana_transcript "OTTHUMT00000390926.1" ; hgnc_id "HGNC:25048" ; level 2 ; orig_coord_info "chr11,77994590,77994643,-" ; protein_id "ENSP00000407787.2" ; transcript_id "AP000867.4--INTS4^ENST00000433818.6" ; transcript_name "INTS4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
CST9--CST9L HAVANA gene 1001 3633 . + . FI_gene_label "CST9^ENSG00000173335.5" ; ID "CST9--CST9L^CST9^ENSG00000173335.5" ; ccdsid "CCDS33450.1" ; exon_id "ENSE00001472300.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9^ENSG00000173335.5" ; gene_name CST9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032076.1" ; havana_transcript "OTTHUMT00000078341.1" ; hgnc_id "HGNC:13261" ; level 2 ; orig_coord_info "chr20,23605610,23605864,-" ; protein_id "ENSP00000366170.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376971.4" ; transcript_name "CST9-201" ; transcript_support_level 1 ; transcript_type protein_coding
CST9--CST9L HAVANA mRNA 1001 3633 . + . FI_gene_label "CST9^ENSG00000173335.5" ; ID "CST9--CST9L^ENST00000376971.4" ; Parent "CST9--CST9L^CST9^ENSG00000173335.5" ; ccdsid "CCDS33450.1" ; exon_id "ENSE00001472300.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9^ENSG00000173335.5" ; gene_name CST9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032076.1" ; havana_transcript "OTTHUMT00000078341.1" ; hgnc_id "HGNC:13261" ; level 2 ; orig_coord_info "chr20,23605610,23605864,-" ; protein_id "ENSP00000366170.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376971.4" ; transcript_name "CST9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CST9--CST9L HAVANA gene 6634 9263 . + . FI_gene_label "CST9L^ENSG00000101435.5" ; ID "CST9--CST9L^CST9L^ENSG00000101435.5" ; ccdsid "CCDS13157.1" ; exon_id "ENSE00001472328.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9L^ENSG00000101435.5" ; gene_name CST9L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032073.2" ; havana_transcript "OTTHUMT00000078338.2" ; hgnc_id "HGNC:16233" ; level 2 ; orig_coord_info "chr20,23568211,23568450,-" ; protein_id "ENSP00000366178.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376979.4" ; transcript_name "CST9L-201" ; transcript_support_level 1 ; transcript_type protein_coding
CST9--CST9L HAVANA mRNA 6634 9263 . + . FI_gene_label "CST9L^ENSG00000101435.5" ; ID "CST9--CST9L^ENST00000376979.4" ; Parent "CST9--CST9L^CST9L^ENSG00000101435.5" ; ccdsid "CCDS13157.1" ; exon_id "ENSE00001472328.2" ; exon_number 1 ; gene_id "CST9--CST9L^CST9L^ENSG00000101435.5" ; gene_name CST9L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032073.2" ; havana_transcript "OTTHUMT00000078338.2" ; hgnc_id "HGNC:16233" ; level 2 ; orig_coord_info "chr20,23568211,23568450,-" ; protein_id "ENSP00000366178.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CST9--CST9L^ENST00000376979.4" ; transcript_name "CST9L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTTN--PPP6R3 HAVANA gene 24344 59491 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "CTTN--PPP6R3^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "CTTN--PPP6R3^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "CTTN--PPP6R3^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTTN--PPP6R3 HAVANA mRNA 24344 59491 . + . FI_gene_label "PPP6R3^ENSG00000110075.15" ; ID "CTTN--PPP6R3^ENST00000265636.9" ; Parent "CTTN--PPP6R3^PPP6R3^ENSG00000110075.15" ; ccdsid "CCDS8182.1" ; exon_id "ENSE00003792120.1" ; exon_number 4 ; gene_id "CTTN--PPP6R3^PPP6R3^ENSG00000110075.15" ; gene_name PPP6R3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167596.6" ; havana_transcript "OTTHUMT00000395284.1" ; hgnc_id "HGNC:1173" ; level 2 ; orig_coord_info "chr11,68537665,68537891,+" ; protein_id "ENSP00000265636.4" ; tag basic CCDS ; transcript_id "CTTN--PPP6R3^ENST00000265636.9" ; transcript_name "PPP6R3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTTN--PPP6R3 HAVANA gene 1126 21252 . + . FI_gene_label "CTTN^ENSG00000085733.16" ; ID "CTTN--PPP6R3^CTTN^ENSG00000085733.16" ; ccdsid "CCDS41680.1" ; exon_id "ENSE00003684603.1" ; exon_number 3 ; gene_id "CTTN--PPP6R3^CTTN^ENSG00000085733.16" ; gene_name CTTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000134307.4" ; havana_transcript "OTTHUMT00000259233.3" ; hgnc_id "HGNC:3338" ; level 2 ; orig_coord_info "chr11,70407298,70407384,+" ; protein_id "ENSP00000301843.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--PPP6R3^ENST00000301843.13" ; transcript_name "CTTN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTTN--PPP6R3 HAVANA mRNA 1126 21252 . + . FI_gene_label "CTTN^ENSG00000085733.16" ; ID "CTTN--PPP6R3^ENST00000301843.13" ; Parent "CTTN--PPP6R3^CTTN^ENSG00000085733.16" ; ccdsid "CCDS41680.1" ; exon_id "ENSE00003684603.1" ; exon_number 3 ; gene_id "CTTN--PPP6R3^CTTN^ENSG00000085733.16" ; gene_name CTTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000134307.4" ; havana_transcript "OTTHUMT00000259233.3" ; hgnc_id "HGNC:3338" ; level 2 ; orig_coord_info "chr11,70407298,70407384,+" ; protein_id "ENSP00000301843.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--PPP6R3^ENST00000301843.13" ; transcript_name "CTTN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTTN--TENM4 HAVANA gene 24262 82957 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "CTTN--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "CTTN--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
CTTN--TENM4 HAVANA mRNA 24262 82957 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "CTTN--TENM4^ENST00000278550.12" ; Parent "CTTN--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "CTTN--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CTTN--TENM4 HAVANA gene 1126 21252 . + . FI_gene_label "CTTN^ENSG00000085733.16" ; ID "CTTN--TENM4^CTTN^ENSG00000085733.16" ; ccdsid "CCDS41680.1" ; exon_id "ENSE00003684603.1" ; exon_number 3 ; gene_id "CTTN--TENM4^CTTN^ENSG00000085733.16" ; gene_name CTTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000134307.4" ; havana_transcript "OTTHUMT00000259233.3" ; hgnc_id "HGNC:3338" ; level 2 ; orig_coord_info "chr11,70407298,70407384,+" ; protein_id "ENSP00000301843.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--TENM4^ENST00000301843.13" ; transcript_name "CTTN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTTN--TENM4 HAVANA mRNA 1126 21252 . + . FI_gene_label "CTTN^ENSG00000085733.16" ; ID "CTTN--TENM4^ENST00000301843.13" ; Parent "CTTN--TENM4^CTTN^ENSG00000085733.16" ; ccdsid "CCDS41680.1" ; exon_id "ENSE00003684603.1" ; exon_number 3 ; gene_id "CTTN--TENM4^CTTN^ENSG00000085733.16" ; gene_name CTTN ; gene_type protein_coding ; havana_gene "OTTHUMG00000134307.4" ; havana_transcript "OTTHUMT00000259233.3" ; hgnc_id "HGNC:3338" ; level 2 ; orig_coord_info "chr11,70407298,70407384,+" ; protein_id "ENSP00000301843.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CTTN--TENM4^ENST00000301843.13" ; transcript_name "CTTN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNAH14--VPS13B HAVANA gene 52944 103865 . + . FI_gene_label "DNAH14^ENSG00000185842.15" ; ID "DNAH14--VPS13B^DNAH14^ENSG00000185842.15" ; exon_id "ENSE00001430663.2" ; exon_number 1 ; gene_id "DNAH14--VPS13B^DNAH14^ENSG00000185842.15" ; gene_name DNAH14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037447.9" ; havana_transcript "OTTHUMT00000277120.2" ; hgnc_id "HGNC:2945" ; level 2 ; orig_coord_info "chr1,225240794,225240822,+" ; protein_id "ENSP00000328980.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "DNAH14--VPS13B^ENST00000327794.10" ; transcript_name "DNAH14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
DNAH14--VPS13B HAVANA mRNA 52944 103865 . + . FI_gene_label "DNAH14^ENSG00000185842.15" ; ID "DNAH14--VPS13B^ENST00000327794.10" ; Parent "DNAH14--VPS13B^DNAH14^ENSG00000185842.15" ; exon_id "ENSE00001430663.2" ; exon_number 1 ; gene_id "DNAH14--VPS13B^DNAH14^ENSG00000185842.15" ; gene_name DNAH14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037447.9" ; havana_transcript "OTTHUMT00000277120.2" ; hgnc_id "HGNC:2945" ; level 2 ; orig_coord_info "chr1,225240794,225240822,+" ; protein_id "ENSP00000328980.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "DNAH14--VPS13B^ENST00000327794.10" ; transcript_name "DNAH14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DNAH14--VPS13B HAVANA gene 108094 126320 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "DNAH14--VPS13B^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "DNAH14--VPS13B^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "DNAH14--VPS13B^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNAH14--VPS13B HAVANA mRNA 108094 126320 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "DNAH14--VPS13B^ENST00000355155.5" ; Parent "DNAH14--VPS13B^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "DNAH14--VPS13B^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "DNAH14--VPS13B^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--GPR37L1 HAVANA gene 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--GPR37L1^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--GPR37L1^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--GPR37L1^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--GPR37L1 HAVANA mRNA 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--GPR37L1^ENST00000206249.8" ; Parent "ESR1--GPR37L1^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--GPR37L1^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--GPR37L1^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--GPR37L1 HAVANA gene 35052 42580 . + . FI_gene_label "GPR37L1^ENSG00000170075.9" ; ID "ESR1--GPR37L1^GPR37L1^ENSG00000170075.9" ; ccdsid "CCDS1420.1" ; exon_id "ENSE00001444059.4" ; exon_number 1 ; gene_id "ESR1--GPR37L1^GPR37L1^ENSG00000170075.9" ; gene_name GPR37L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035924.3" ; havana_transcript "OTTHUMT00000087496.3" ; hgnc_id "HGNC:14923" ; level 2 ; orig_coord_info "chr1,202122964,202123593,+" ; protein_id "ENSP00000356251.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--GPR37L1^ENST00000367282.6" ; transcript_name "GPR37L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--GPR37L1 HAVANA mRNA 35052 42580 . + . FI_gene_label "GPR37L1^ENSG00000170075.9" ; ID "ESR1--GPR37L1^ENST00000367282.6" ; Parent "ESR1--GPR37L1^GPR37L1^ENSG00000170075.9" ; ccdsid "CCDS1420.1" ; exon_id "ENSE00001444059.4" ; exon_number 1 ; gene_id "ESR1--GPR37L1^GPR37L1^ENSG00000170075.9" ; gene_name GPR37L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035924.3" ; havana_transcript "OTTHUMT00000087496.3" ; hgnc_id "HGNC:14923" ; level 2 ; orig_coord_info "chr1,202122964,202123593,+" ; protein_id "ENSP00000356251.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--GPR37L1^ENST00000367282.6" ; transcript_name "GPR37L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR1--RAB11FIP1 HAVANA gene 37289 50890 . + . FI_gene_label "RAB11FIP1^ENSG00000156675.16" ; ID "FGFR1--RAB11FIP1^RAB11FIP1^ENSG00000156675.16" ; ccdsid "CCDS34881.1" ; exon_id "ENSE00002095920.1" ; exon_number 1 ; gene_id "FGFR1--RAB11FIP1^RAB11FIP1^ENSG00000156675.16" ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4" ; havana_transcript "OTTHUMT00000376815.1" ; hgnc_id "HGNC:30265" ; level 2 ; orig_coord_info "chr8,37899071,37899441,-" ; protein_id "ENSP00000287263.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "FGFR1--RAB11FIP1^ENST00000287263.8" ; transcript_name "RAB11FIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR1--RAB11FIP1 HAVANA mRNA 37289 50890 . + . FI_gene_label "RAB11FIP1^ENSG00000156675.16" ; ID "FGFR1--RAB11FIP1^ENST00000287263.8" ; Parent "FGFR1--RAB11FIP1^RAB11FIP1^ENSG00000156675.16" ; ccdsid "CCDS34881.1" ; exon_id "ENSE00002095920.1" ; exon_number 1 ; gene_id "FGFR1--RAB11FIP1^RAB11FIP1^ENSG00000156675.16" ; gene_name RAB11FIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164026.4" ; havana_transcript "OTTHUMT00000376815.1" ; hgnc_id "HGNC:30265" ; level 2 ; orig_coord_info "chr8,37899071,37899441,-" ; protein_id "ENSP00000287263.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "FGFR1--RAB11FIP1^ENST00000287263.8" ; transcript_name "RAB11FIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR1--RAB11FIP1 HAVANA gene 1219 28749 . + . FI_gene_label "FGFR1^ENSG00000077782.21" ; ID "FGFR1--RAB11FIP1^FGFR1^ENSG00000077782.21" ; ccdsid "CCDS43731.1" ; exon_id "ENSE00003610788.1" ; exon_number 2 ; gene_id "FGFR1--RAB11FIP1^FGFR1^ENSG00000077782.21" ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18" ; havana_transcript "OTTHUMT00000304017.2" ; hgnc_id "HGNC:3688" ; level 2 ; orig_coord_info "chr8,38457356,38457446,-" ; protein_id "ENSP00000327229.6" ; tag non_canonical_conserved basic CCDS ; transcript_id "FGFR1--RAB11FIP1^ENST00000326324.10" ; transcript_name "FGFR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR1--RAB11FIP1 HAVANA mRNA 1219 28749 . + . FI_gene_label "FGFR1^ENSG00000077782.21" ; ID "FGFR1--RAB11FIP1^ENST00000326324.10" ; Parent "FGFR1--RAB11FIP1^FGFR1^ENSG00000077782.21" ; ccdsid "CCDS43731.1" ; exon_id "ENSE00003610788.1" ; exon_number 2 ; gene_id "FGFR1--RAB11FIP1^FGFR1^ENSG00000077782.21" ; gene_name FGFR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000147366.18" ; havana_transcript "OTTHUMT00000304017.2" ; hgnc_id "HGNC:3688" ; level 2 ; orig_coord_info "chr8,38457356,38457446,-" ; protein_id "ENSP00000327229.6" ; tag non_canonical_conserved basic CCDS ; transcript_id "FGFR1--RAB11FIP1^ENST00000326324.10" ; transcript_name "FGFR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLT1D1--SLC15A4 HAVANA gene 21129 32971 . + . FI_gene_label "SLC15A4^ENSG00000139370.12" ; ID "GLT1D1--SLC15A4^SLC15A4^ENSG00000139370.12" ; ccdsid "CCDS9264.1" ; exon_id "ENSE00001203283.5" ; exon_number 1 ; gene_id "GLT1D1--SLC15A4^SLC15A4^ENSG00000139370.12" ; gene_name SLC15A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168415.4" ; havana_transcript "OTTHUMT00000399663.3" ; hgnc_id "HGNC:23090" ; level 2 ; orig_coord_info "chr12,128823398,128823943,-" ; protein_id "ENSP00000266771.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLT1D1--SLC15A4^ENST00000266771.10" ; transcript_name "SLC15A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLT1D1--SLC15A4 HAVANA mRNA 21129 32971 . + . FI_gene_label "SLC15A4^ENSG00000139370.12" ; ID "GLT1D1--SLC15A4^ENST00000266771.10" ; Parent "GLT1D1--SLC15A4^SLC15A4^ENSG00000139370.12" ; ccdsid "CCDS9264.1" ; exon_id "ENSE00001203283.5" ; exon_number 1 ; gene_id "GLT1D1--SLC15A4^SLC15A4^ENSG00000139370.12" ; gene_name SLC15A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168415.4" ; havana_transcript "OTTHUMT00000399663.3" ; hgnc_id "HGNC:23090" ; level 2 ; orig_coord_info "chr12,128823398,128823943,-" ; protein_id "ENSP00000266771.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLT1D1--SLC15A4^ENST00000266771.10" ; transcript_name "SLC15A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLT1D1--SLC15A4 HAVANA gene 1052 18128 . + . FI_gene_label "GLT1D1^ENSG00000151948.12" ; ID "GLT1D1--SLC15A4^GLT1D1^ENSG00000151948.12" ; ccdsid "CCDS9265.1" ; exon_id "ENSE00002245589.2" ; exon_number 1 ; gene_id "GLT1D1--SLC15A4^GLT1D1^ENSG00000151948.12" ; gene_name GLT1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168437.3" ; havana_transcript "OTTHUMT00000399741.3" ; hgnc_id "HGNC:26483" ; level 2 ; orig_coord_info "chr12,128853582,128853649,+" ; protein_id "ENSP00000281703.6" ; tag basic MANE_Select CCDS ; transcript_id "GLT1D1--SLC15A4^ENST00000281703.11" ; transcript_name "GLT1D1-201" ; transcript_support_level 2 ; transcript_type protein_coding
GLT1D1--SLC15A4 HAVANA mRNA 1052 18128 . + . FI_gene_label "GLT1D1^ENSG00000151948.12" ; ID "GLT1D1--SLC15A4^ENST00000281703.11" ; Parent "GLT1D1--SLC15A4^GLT1D1^ENSG00000151948.12" ; ccdsid "CCDS9265.1" ; exon_id "ENSE00002245589.2" ; exon_number 1 ; gene_id "GLT1D1--SLC15A4^GLT1D1^ENSG00000151948.12" ; gene_name GLT1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168437.3" ; havana_transcript "OTTHUMT00000399741.3" ; hgnc_id "HGNC:26483" ; level 2 ; orig_coord_info "chr12,128853582,128853649,+" ; protein_id "ENSP00000281703.6" ; tag basic MANE_Select CCDS ; transcript_id "GLT1D1--SLC15A4^ENST00000281703.11" ; transcript_name "GLT1D1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GRK5--MGMT ENSEMBL gene 25306 36368 . + . FI_gene_label "MGMT^ENSG00000170430.10" ; ID "GRK5--MGMT^MGMT^ENSG00000170430.10" ; ccdsid "CCDS7660.2" ; exon_id "ENSE00002090439.2" ; exon_number 1 ; gene_id "GRK5--MGMT^MGMT^ENSG00000170430.10" ; gene_name MGMT ; gene_type protein_coding ; havana_gene "OTTHUMG00000019261.4" ; hgnc_id "HGNC:7059" ; level 3 ; orig_coord_info "chr10,129467216,129467296,+" ; protein_id "ENSP00000302111.7" ; tag basic appris_principal_2 CCDS ; transcript_id "GRK5--MGMT^ENST00000306010.8" ; transcript_name "MGMT-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRK5--MGMT ENSEMBL mRNA 25306 36368 . + . FI_gene_label "MGMT^ENSG00000170430.10" ; ID "GRK5--MGMT^ENST00000306010.8" ; Parent "GRK5--MGMT^MGMT^ENSG00000170430.10" ; ccdsid "CCDS7660.2" ; exon_id "ENSE00002090439.2" ; exon_number 1 ; gene_id "GRK5--MGMT^MGMT^ENSG00000170430.10" ; gene_name MGMT ; gene_type protein_coding ; havana_gene "OTTHUMG00000019261.4" ; hgnc_id "HGNC:7059" ; level 3 ; orig_coord_info "chr10,129467216,129467296,+" ; protein_id "ENSP00000302111.7" ; tag basic appris_principal_2 CCDS ; transcript_id "GRK5--MGMT^ENST00000306010.8" ; transcript_name "MGMT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRK5--MGMT HAVANA gene 1001 22305 . + . FI_gene_label "GRK5^ENSG00000198873.12" ; ID "GRK5--MGMT^GRK5^ENSG00000198873.12" ; ccdsid "CCDS7612.1" ; exon_id "ENSE00001448825.2" ; exon_number 1 ; gene_id "GRK5--MGMT^GRK5^ENSG00000198873.12" ; gene_name GRK5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019149.4" ; havana_transcript "OTTHUMT00000050652.3" ; hgnc_id "HGNC:4544" ; level 2 ; orig_coord_info "chr10,119207918,119207969,+" ; protein_id "ENSP00000376609.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRK5--MGMT^ENST00000392870.3" ; transcript_name "GRK5-202" ; transcript_support_level 1 ; transcript_type protein_coding
GRK5--MGMT HAVANA mRNA 1001 22305 . + . FI_gene_label "GRK5^ENSG00000198873.12" ; ID "GRK5--MGMT^ENST00000392870.3" ; Parent "GRK5--MGMT^GRK5^ENSG00000198873.12" ; ccdsid "CCDS7612.1" ; exon_id "ENSE00001448825.2" ; exon_number 1 ; gene_id "GRK5--MGMT^GRK5^ENSG00000198873.12" ; gene_name GRK5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019149.4" ; havana_transcript "OTTHUMT00000050652.3" ; hgnc_id "HGNC:4544" ; level 2 ; orig_coord_info "chr10,119207918,119207969,+" ; protein_id "ENSP00000376609.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRK5--MGMT^ENST00000392870.3" ; transcript_name "GRK5-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INTS4--AC016813.1 HAVANA gene 1001 30281 . + . FI_gene_label "INTS4^ENSG00000149262.17" ; ID "INTS4--AC016813.1^INTS4^ENSG00000149262.17" ; exon_id "ENSE00001374341.1" ; exon_number 1 ; gene_id "INTS4--AC016813.1^INTS4^ENSG00000149262.17" ; gene_name INTS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166629.3" ; havana_transcript "OTTHUMT00000390926.1" ; hgnc_id "HGNC:25048" ; level 2 ; orig_coord_info "chr11,77994590,77994643,-" ; protein_id "ENSP00000407787.2" ; transcript_id "INTS4--AC016813.1^ENST00000433818.6" ; transcript_name "INTS4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
INTS4--AC016813.1 HAVANA mRNA 1001 30281 . + . FI_gene_label "INTS4^ENSG00000149262.17" ; ID "INTS4--AC016813.1^ENST00000433818.6" ; Parent "INTS4--AC016813.1^INTS4^ENSG00000149262.17" ; exon_id "ENSE00001374341.1" ; exon_number 1 ; gene_id "INTS4--AC016813.1^INTS4^ENSG00000149262.17" ; gene_name INTS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166629.3" ; havana_transcript "OTTHUMT00000390926.1" ; hgnc_id "HGNC:25048" ; level 2 ; orig_coord_info "chr11,77994590,77994643,-" ; protein_id "ENSP00000407787.2" ; transcript_id "INTS4--AC016813.1^ENST00000433818.6" ; transcript_name "INTS4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
INTS4--RNF5P1 HAVANA gene 1001 30281 . + . FI_gene_label "INTS4^ENSG00000149262.17" ; ID "INTS4--RNF5P1^INTS4^ENSG00000149262.17" ; exon_id "ENSE00001374341.1" ; exon_number 1 ; gene_id "INTS4--RNF5P1^INTS4^ENSG00000149262.17" ; gene_name INTS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166629.3" ; havana_transcript "OTTHUMT00000390926.1" ; hgnc_id "HGNC:25048" ; level 2 ; orig_coord_info "chr11,77994590,77994643,-" ; protein_id "ENSP00000407787.2" ; transcript_id "INTS4--RNF5P1^ENST00000433818.6" ; transcript_name "INTS4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
INTS4--RNF5P1 HAVANA mRNA 1001 30281 . + . FI_gene_label "INTS4^ENSG00000149262.17" ; ID "INTS4--RNF5P1^ENST00000433818.6" ; Parent "INTS4--RNF5P1^INTS4^ENSG00000149262.17" ; exon_id "ENSE00001374341.1" ; exon_number 1 ; gene_id "INTS4--RNF5P1^INTS4^ENSG00000149262.17" ; gene_name INTS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166629.3" ; havana_transcript "OTTHUMT00000390926.1" ; hgnc_id "HGNC:25048" ; level 2 ; orig_coord_info "chr11,77994590,77994643,-" ; protein_id "ENSP00000407787.2" ; transcript_id "INTS4--RNF5P1^ENST00000433818.6" ; transcript_name "INTS4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
LRMDA--PIP4K2A HAVANA gene 40044 49181 . + . FI_gene_label "PIP4K2A^ENSG00000150867.14" ; ID "LRMDA--PIP4K2A^PIP4K2A^ENSG00000150867.14" ; exon_id "ENSE00001775875.2" ; exon_number 1 ; gene_id "LRMDA--PIP4K2A^PIP4K2A^ENSG00000150867.14" ; gene_name PIP4K2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017810.5" ; havana_transcript "OTTHUMT00000468419.1" ; hgnc_id "HGNC:8997" ; level 2 ; orig_coord_info "chr10,22591629,22591658,-" ; protein_id "ENSP00000326294.7" ; tag basic ; transcript_id "LRMDA--PIP4K2A^ENST00000323883.11" ; transcript_name "PIP4K2A-201" ; transcript_support_level 2 ; transcript_type protein_coding
LRMDA--PIP4K2A HAVANA mRNA 40044 49181 . + . FI_gene_label "PIP4K2A^ENSG00000150867.14" ; ID "LRMDA--PIP4K2A^ENST00000323883.11" ; Parent "LRMDA--PIP4K2A^PIP4K2A^ENSG00000150867.14" ; exon_id "ENSE00001775875.2" ; exon_number 1 ; gene_id "LRMDA--PIP4K2A^PIP4K2A^ENSG00000150867.14" ; gene_name PIP4K2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017810.5" ; havana_transcript "OTTHUMT00000468419.1" ; hgnc_id "HGNC:8997" ; level 2 ; orig_coord_info "chr10,22591629,22591658,-" ; protein_id "ENSP00000326294.7" ; tag basic ; transcript_id "LRMDA--PIP4K2A^ENST00000323883.11" ; transcript_name "PIP4K2A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LRMDA--PIP4K2A HAVANA gene 5410 24677 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "LRMDA--PIP4K2A^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "LRMDA--PIP4K2A^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "LRMDA--PIP4K2A^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRMDA--PIP4K2A HAVANA mRNA 5410 24677 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "LRMDA--PIP4K2A^ENST00000372499.5" ; Parent "LRMDA--PIP4K2A^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "LRMDA--PIP4K2A^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "LRMDA--PIP4K2A^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--CHRDL2 HAVANA gene 34085 47338 . + . FI_gene_label "CHRDL2^ENSG00000054938.16" ; ID "LRP5--CHRDL2^CHRDL2^ENSG00000054938.16" ; ccdsid "CCDS8234.1" ; exon_id "ENSE00002182094.1" ; exon_number 1 ; gene_id "LRP5--CHRDL2^CHRDL2^ENSG00000054938.16" ; gene_name CHRDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165623.1" ; havana_transcript "OTTHUMT00000385390.1" ; hgnc_id "HGNC:24168" ; level 2 ; orig_coord_info "chr11,74730807,74730888,-" ; protein_id "ENSP00000263671.5" ; tag basic CCDS ; transcript_id "LRP5--CHRDL2^ENST00000263671.9" ; transcript_name "CHRDL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--CHRDL2 HAVANA mRNA 34085 47338 . + . FI_gene_label "CHRDL2^ENSG00000054938.16" ; ID "LRP5--CHRDL2^ENST00000263671.9" ; Parent "LRP5--CHRDL2^CHRDL2^ENSG00000054938.16" ; ccdsid "CCDS8234.1" ; exon_id "ENSE00002182094.1" ; exon_number 1 ; gene_id "LRP5--CHRDL2^CHRDL2^ENSG00000054938.16" ; gene_name CHRDL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165623.1" ; havana_transcript "OTTHUMT00000385390.1" ; hgnc_id "HGNC:24168" ; level 2 ; orig_coord_info "chr11,74730807,74730888,-" ; protein_id "ENSP00000263671.5" ; tag basic CCDS ; transcript_id "LRP5--CHRDL2^ENST00000263671.9" ; transcript_name "CHRDL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--CHRDL2 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--CHRDL2^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--CHRDL2^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--CHRDL2^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--CHRDL2 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--CHRDL2^ENST00000294304.12" ; Parent "LRP5--CHRDL2^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--CHRDL2^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--CHRDL2^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--RN7SKP297 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--RN7SKP297^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--RN7SKP297^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--RN7SKP297^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--RN7SKP297 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--RN7SKP297^ENST00000294304.12" ; Parent "LRP5--RN7SKP297^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--RN7SKP297^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--RN7SKP297^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC75B--SEZ6L HAVANA gene 9521 33026 . + . FI_gene_label "SEZ6L^ENSG00000100095.19" ; ID "LRRC75B--SEZ6L^SEZ6L^ENSG00000100095.19" ; ccdsid "CCDS13833.1" ; exon_id "ENSE00003843605.1" ; exon_number 1 ; gene_id "LRRC75B--SEZ6L^SEZ6L^ENSG00000100095.19" ; gene_name SEZ6L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150870.6" ; havana_transcript "OTTHUMT00000320359.4" ; hgnc_id "HGNC:10763" ; level 2 ; orig_coord_info "chr22,26169670,26169763,+" ; protein_id "ENSP00000248933.6" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRRC75B--SEZ6L^ENST00000248933.11" ; transcript_name "SEZ6L-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC75B--SEZ6L HAVANA mRNA 9521 33026 . + . FI_gene_label "SEZ6L^ENSG00000100095.19" ; ID "LRRC75B--SEZ6L^ENST00000248933.11" ; Parent "LRRC75B--SEZ6L^SEZ6L^ENSG00000100095.19" ; ccdsid "CCDS13833.1" ; exon_id "ENSE00003843605.1" ; exon_number 1 ; gene_id "LRRC75B--SEZ6L^SEZ6L^ENSG00000100095.19" ; gene_name SEZ6L ; gene_type protein_coding ; havana_gene "OTTHUMG00000150870.6" ; havana_transcript "OTTHUMT00000320359.4" ; hgnc_id "HGNC:10763" ; level 2 ; orig_coord_info "chr22,26169670,26169763,+" ; protein_id "ENSP00000248933.6" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRRC75B--SEZ6L^ENST00000248933.11" ; transcript_name "SEZ6L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC75B--SEZ6L HAVANA gene 1136 6505 . + . FI_gene_label "LRRC75B^ENSG00000178026.13" ; ID "LRRC75B--SEZ6L^LRRC75B^ENSG00000178026.13" ; ccdsid "CCDS42991.1" ; exon_id "ENSE00001753854.3" ; exon_number 1 ; gene_id "LRRC75B--SEZ6L^LRRC75B^ENSG00000178026.13" ; gene_name LRRC75B ; gene_type protein_coding ; havana_gene "OTTHUMG00000150729.2" ; havana_transcript "OTTHUMT00000319832.2" ; hgnc_id "HGNC:33155" ; level 2 ; orig_coord_info "chr22,24592863,24593039,-" ; protein_id "ENSP00000320520.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRRC75B--SEZ6L^ENST00000318753.13" ; transcript_name "LRRC75B-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC75B--SEZ6L HAVANA mRNA 1136 6505 . + . FI_gene_label "LRRC75B^ENSG00000178026.13" ; ID "LRRC75B--SEZ6L^ENST00000318753.13" ; Parent "LRRC75B--SEZ6L^LRRC75B^ENSG00000178026.13" ; ccdsid "CCDS42991.1" ; exon_id "ENSE00001753854.3" ; exon_number 1 ; gene_id "LRRC75B--SEZ6L^LRRC75B^ENSG00000178026.13" ; gene_name LRRC75B ; gene_type protein_coding ; havana_gene "OTTHUMG00000150729.2" ; havana_transcript "OTTHUMT00000319832.2" ; hgnc_id "HGNC:33155" ; level 2 ; orig_coord_info "chr22,24592863,24593039,-" ; protein_id "ENSP00000320520.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRRC75B--SEZ6L^ENST00000318753.13" ; transcript_name "LRRC75B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPEPPS--RNA5SP526 HAVANA gene 2123 32736 . + . FI_gene_label "NPEPPS^ENSG00000141279.17" ; ID "NPEPPS--RNA5SP526^NPEPPS^ENSG00000141279.17" ; ccdsid "CCDS45721.1" ; exon_id "ENSE00001138605.6" ; exon_number 1 ; gene_id "NPEPPS--RNA5SP526^NPEPPS^ENSG00000141279.17" ; gene_name NPEPPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000165471.7" ; havana_transcript "OTTHUMT00000384269.2" ; hgnc_id "HGNC:7900" ; level 2 ; orig_coord_info "chr17,47531301,47531555,+" ; protein_id "ENSP00000320324.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NPEPPS--RNA5SP526^ENST00000322157.9" ; transcript_name "NPEPPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPEPPS--RNA5SP526 HAVANA mRNA 2123 32736 . + . FI_gene_label "NPEPPS^ENSG00000141279.17" ; ID "NPEPPS--RNA5SP526^ENST00000322157.9" ; Parent "NPEPPS--RNA5SP526^NPEPPS^ENSG00000141279.17" ; ccdsid "CCDS45721.1" ; exon_id "ENSE00001138605.6" ; exon_number 1 ; gene_id "NPEPPS--RNA5SP526^NPEPPS^ENSG00000141279.17" ; gene_name NPEPPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000165471.7" ; havana_transcript "OTTHUMT00000384269.2" ; hgnc_id "HGNC:7900" ; level 2 ; orig_coord_info "chr17,47531301,47531555,+" ; protein_id "ENSP00000320324.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NPEPPS--RNA5SP526^ENST00000322157.9" ; transcript_name "NPEPPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPEPPS--TBC1D3 HAVANA gene 2123 32736 . + . FI_gene_label "NPEPPS^ENSG00000141279.17" ; ID "NPEPPS--TBC1D3^NPEPPS^ENSG00000141279.17" ; ccdsid "CCDS45721.1" ; exon_id "ENSE00001138605.6" ; exon_number 1 ; gene_id "NPEPPS--TBC1D3^NPEPPS^ENSG00000141279.17" ; gene_name NPEPPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000165471.7" ; havana_transcript "OTTHUMT00000384269.2" ; hgnc_id "HGNC:7900" ; level 2 ; orig_coord_info "chr17,47531301,47531555,+" ; protein_id "ENSP00000320324.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NPEPPS--TBC1D3^ENST00000322157.9" ; transcript_name "NPEPPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPEPPS--TBC1D3 HAVANA mRNA 2123 32736 . + . FI_gene_label "NPEPPS^ENSG00000141279.17" ; ID "NPEPPS--TBC1D3^ENST00000322157.9" ; Parent "NPEPPS--TBC1D3^NPEPPS^ENSG00000141279.17" ; ccdsid "CCDS45721.1" ; exon_id "ENSE00001138605.6" ; exon_number 1 ; gene_id "NPEPPS--TBC1D3^NPEPPS^ENSG00000141279.17" ; gene_name NPEPPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000165471.7" ; havana_transcript "OTTHUMT00000384269.2" ; hgnc_id "HGNC:7900" ; level 2 ; orig_coord_info "chr17,47531301,47531555,+" ; protein_id "ENSP00000320324.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NPEPPS--TBC1D3^ENST00000322157.9" ; transcript_name "NPEPPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPEPPS--TBC1D3 HAVANA gene 37126 47058 . + . FI_gene_label "TBC1D3^ENSG00000274611.3" ; ID "NPEPPS--TBC1D3^TBC1D3^ENSG00000274611.3" ; ccdsid "CCDS45658.1" ; exon_id "ENSE00003731868.1" ; exon_number 2 ; gene_id "NPEPPS--TBC1D3^TBC1D3^ENSG00000274611.3" ; gene_name TBC1D3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188487.1" ; havana_transcript "OTTHUMT00000477408.1" ; hgnc_id "HGNC:19031" ; level 2 ; orig_coord_info "chr17,38190958,38191029,-" ; protein_id "ENSP00000478683.1" ; tag not_best_in_genome_evidence basic appris_principal_1 CCDS ; transcript_id "NPEPPS--TBC1D3^ENST00000620215.2" ; transcript_name "TBC1D3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPEPPS--TBC1D3 HAVANA mRNA 37126 47058 . + . FI_gene_label "TBC1D3^ENSG00000274611.3" ; ID "NPEPPS--TBC1D3^ENST00000620215.2" ; Parent "NPEPPS--TBC1D3^TBC1D3^ENSG00000274611.3" ; ccdsid "CCDS45658.1" ; exon_id "ENSE00003731868.1" ; exon_number 2 ; gene_id "NPEPPS--TBC1D3^TBC1D3^ENSG00000274611.3" ; gene_name TBC1D3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188487.1" ; havana_transcript "OTTHUMT00000477408.1" ; hgnc_id "HGNC:19031" ; level 2 ; orig_coord_info "chr17,38190958,38191029,-" ; protein_id "ENSP00000478683.1" ; tag not_best_in_genome_evidence basic appris_principal_1 CCDS ; transcript_id "NPEPPS--TBC1D3^ENST00000620215.2" ; transcript_name "TBC1D3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUMA1--GAB2 HAVANA gene 44597 61218 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "NUMA1--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "NUMA1--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "NUMA1--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUMA1--GAB2 HAVANA mRNA 44597 61218 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "NUMA1--GAB2^ENST00000340149.6" ; Parent "NUMA1--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "NUMA1--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "NUMA1--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUMA1--GAB2 HAVANA gene 1305 38805 . + . FI_gene_label "NUMA1^ENSG00000137497.18" ; ID "NUMA1--GAB2^NUMA1^ENSG00000137497.18" ; exon_id "ENSE00003495985.1" ; exon_number 3 ; gene_id "NUMA1--GAB2^NUMA1^ENSG00000137497.18" ; gene_name NUMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167697.4" ; havana_transcript "OTTHUMT00000395768.1" ; hgnc_id "HGNC:8059" ; level 2 ; orig_coord_info "chr11,72035902,72035943,-" ; protein_id "ENSP00000260051.8" ; tag basic appris_alternative_2 ; transcript_id "NUMA1--GAB2^ENST00000351960.10" ; transcript_name "NUMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUMA1--GAB2 HAVANA mRNA 1305 38805 . + . FI_gene_label "NUMA1^ENSG00000137497.18" ; ID "NUMA1--GAB2^ENST00000351960.10" ; Parent "NUMA1--GAB2^NUMA1^ENSG00000137497.18" ; exon_id "ENSE00003495985.1" ; exon_number 3 ; gene_id "NUMA1--GAB2^NUMA1^ENSG00000137497.18" ; gene_name NUMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167697.4" ; havana_transcript "OTTHUMT00000395768.1" ; hgnc_id "HGNC:8059" ; level 2 ; orig_coord_info "chr11,72035902,72035943,-" ; protein_id "ENSP00000260051.8" ; tag basic appris_alternative_2 ; transcript_id "NUMA1--GAB2^ENST00000351960.10" ; transcript_name "NUMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUMA1--NSD3 HAVANA gene 41806 58004 . + . FI_gene_label "NSD3^ENSG00000147548.17" ; ID "NUMA1--NSD3^NSD3^ENSG00000147548.17" ; ccdsid "CCDS6105.1" ; exon_id "ENSE00002262898.1" ; exon_number 2 ; gene_id "NUMA1--NSD3^NSD3^ENSG00000147548.17" ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10" ; havana_transcript "OTTHUMT00000381925.1" ; hgnc_id "HGNC:12767" ; level 2 ; orig_coord_info "chr8,38347497,38348171,-" ; protein_id "ENSP00000313410.3" ; tag basic CCDS ; transcript_id "NUMA1--NSD3^ENST00000316985.7" ; transcript_name "NSD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUMA1--NSD3 HAVANA mRNA 41806 58004 . + . FI_gene_label "NSD3^ENSG00000147548.17" ; ID "NUMA1--NSD3^ENST00000316985.7" ; Parent "NUMA1--NSD3^NSD3^ENSG00000147548.17" ; ccdsid "CCDS6105.1" ; exon_id "ENSE00002262898.1" ; exon_number 2 ; gene_id "NUMA1--NSD3^NSD3^ENSG00000147548.17" ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10" ; havana_transcript "OTTHUMT00000381925.1" ; hgnc_id "HGNC:12767" ; level 2 ; orig_coord_info "chr8,38347497,38348171,-" ; protein_id "ENSP00000313410.3" ; tag basic CCDS ; transcript_id "NUMA1--NSD3^ENST00000316985.7" ; transcript_name "NSD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUMA1--NSD3 HAVANA gene 1305 38805 . + . FI_gene_label "NUMA1^ENSG00000137497.18" ; ID "NUMA1--NSD3^NUMA1^ENSG00000137497.18" ; exon_id "ENSE00003495985.1" ; exon_number 3 ; gene_id "NUMA1--NSD3^NUMA1^ENSG00000137497.18" ; gene_name NUMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167697.4" ; havana_transcript "OTTHUMT00000395768.1" ; hgnc_id "HGNC:8059" ; level 2 ; orig_coord_info "chr11,72035902,72035943,-" ; protein_id "ENSP00000260051.8" ; tag basic appris_alternative_2 ; transcript_id "NUMA1--NSD3^ENST00000351960.10" ; transcript_name "NUMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUMA1--NSD3 HAVANA mRNA 1305 38805 . + . FI_gene_label "NUMA1^ENSG00000137497.18" ; ID "NUMA1--NSD3^ENST00000351960.10" ; Parent "NUMA1--NSD3^NUMA1^ENSG00000137497.18" ; exon_id "ENSE00003495985.1" ; exon_number 3 ; gene_id "NUMA1--NSD3^NUMA1^ENSG00000137497.18" ; gene_name NUMA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167697.4" ; havana_transcript "OTTHUMT00000395768.1" ; hgnc_id "HGNC:8059" ; level 2 ; orig_coord_info "chr11,72035902,72035943,-" ; protein_id "ENSP00000260051.8" ; tag basic appris_alternative_2 ; transcript_id "NUMA1--NSD3^ENST00000351960.10" ; transcript_name "NUMA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OSCP1--CTPS1 HAVANA gene 1001 14807 . + . FI_gene_label "OSCP1^ENSG00000116885.18" ; ID "OSCP1--CTPS1^OSCP1^ENSG00000116885.18" ; ccdsid "CCDS409.2" ; exon_id "ENSE00001323342.3" ; exon_number 1 ; gene_id "OSCP1--CTPS1^OSCP1^ENSG00000116885.18" ; gene_name OSCP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008139.6" ; havana_transcript "OTTHUMT00000022290.2" ; hgnc_id "HGNC:29971" ; level 2 ; orig_coord_info "chr1,36450258,36450369,-" ; protein_id "ENSP00000235532.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OSCP1--CTPS1^ENST00000235532.9" ; transcript_name "OSCP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
OSCP1--CTPS1 HAVANA mRNA 1001 14807 . + . FI_gene_label "OSCP1^ENSG00000116885.18" ; ID "OSCP1--CTPS1^ENST00000235532.9" ; Parent "OSCP1--CTPS1^OSCP1^ENSG00000116885.18" ; ccdsid "CCDS409.2" ; exon_id "ENSE00001323342.3" ; exon_number 1 ; gene_id "OSCP1--CTPS1^OSCP1^ENSG00000116885.18" ; gene_name OSCP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008139.6" ; havana_transcript "OTTHUMT00000022290.2" ; hgnc_id "HGNC:29971" ; level 2 ; orig_coord_info "chr1,36450258,36450369,-" ; protein_id "ENSP00000235532.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OSCP1--CTPS1^ENST00000235532.9" ; transcript_name "OSCP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OSCP1--CTPS1 HAVANA gene 22384 44181 . + . FI_gene_label "CTPS1^ENSG00000171793.16" ; ID "OSCP1--CTPS1^CTPS1^ENSG00000171793.16" ; ccdsid "CCDS459.1" ; exon_id "ENSE00001458226.1" ; exon_number 1 ; gene_id "OSCP1--CTPS1^CTPS1^ENSG00000171793.16" ; gene_name CTPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000005712.13" ; havana_transcript "OTTHUMT00000015630.1" ; hgnc_id "HGNC:2519" ; level 2 ; orig_coord_info "chr1,40983291,40983456,+" ; protein_id "ENSP00000361699.1" ; tag alternative_5_UTR CAGE_supported_TSS basic appris_principal_1 CCDS ; transcript_id "OSCP1--CTPS1^ENST00000372616.1" ; transcript_name "CTPS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
OSCP1--CTPS1 HAVANA mRNA 22384 44181 . + . FI_gene_label "CTPS1^ENSG00000171793.16" ; ID "OSCP1--CTPS1^ENST00000372616.1" ; Parent "OSCP1--CTPS1^CTPS1^ENSG00000171793.16" ; ccdsid "CCDS459.1" ; exon_id "ENSE00001458226.1" ; exon_number 1 ; gene_id "OSCP1--CTPS1^CTPS1^ENSG00000171793.16" ; gene_name CTPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000005712.13" ; havana_transcript "OTTHUMT00000015630.1" ; hgnc_id "HGNC:2519" ; level 2 ; orig_coord_info "chr1,40983291,40983456,+" ; protein_id "ENSP00000361699.1" ; tag alternative_5_UTR CAGE_supported_TSS basic appris_principal_1 CCDS ; transcript_id "OSCP1--CTPS1^ENST00000372616.1" ; transcript_name "CTPS1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PC--GINS4 HAVANA gene 29157 38427 . + . FI_gene_label "GINS4^ENSG00000147536.12" ; ID "PC--GINS4^GINS4^ENSG00000147536.12" ; ccdsid "CCDS6116.1" ; exon_id "ENSE00003585396.1" ; exon_number 2 ; gene_id "PC--GINS4^GINS4^ENSG00000147536.12" ; gene_name GINS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164079.4" ; havana_transcript "OTTHUMT00000504445.2" ; hgnc_id "HGNC:28226" ; level 2 ; orig_coord_info "chr8,41530203,41530298,+" ; protein_id "ENSP00000276533.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PC--GINS4^ENST00000276533.4" ; transcript_name "GINS4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PC--GINS4 HAVANA mRNA 29157 38427 . + . FI_gene_label "GINS4^ENSG00000147536.12" ; ID "PC--GINS4^ENST00000276533.4" ; Parent "PC--GINS4^GINS4^ENSG00000147536.12" ; ccdsid "CCDS6116.1" ; exon_id "ENSE00003585396.1" ; exon_number 2 ; gene_id "PC--GINS4^GINS4^ENSG00000147536.12" ; gene_name GINS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164079.4" ; havana_transcript "OTTHUMT00000504445.2" ; hgnc_id "HGNC:28226" ; level 2 ; orig_coord_info "chr8,41530203,41530298,+" ; protein_id "ENSP00000276533.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PC--GINS4^ENST00000276533.4" ; transcript_name "GINS4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PC--GINS4 HAVANA gene 8562 26017 . + . FI_gene_label "PC^ENSG00000173599.15" ; ID "PC--GINS4^PC^ENSG00000173599.15" ; ccdsid "CCDS8152.1" ; exon_id "ENSE00003470798.1" ; exon_number 2 ; gene_id "PC--GINS4^PC^ENSG00000173599.15" ; gene_name PC ; gene_type protein_coding ; havana_gene "OTTHUMG00000167099.4" ; havana_transcript "OTTHUMT00000393114.1" ; hgnc_id "HGNC:8636" ; level 2 ; orig_coord_info "chr11,66872024,66872159,-" ; protein_id "ENSP00000377527.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "PC--GINS4^ENST00000393955.6" ; transcript_name "PC-201" ; transcript_support_level 1 ; transcript_type protein_coding
PC--GINS4 HAVANA mRNA 8562 26017 . + . FI_gene_label "PC^ENSG00000173599.15" ; ID "PC--GINS4^ENST00000393955.6" ; Parent "PC--GINS4^PC^ENSG00000173599.15" ; ccdsid "CCDS8152.1" ; exon_id "ENSE00003470798.1" ; exon_number 2 ; gene_id "PC--GINS4^PC^ENSG00000173599.15" ; gene_name PC ; gene_type protein_coding ; havana_gene "OTTHUMG00000167099.4" ; havana_transcript "OTTHUMT00000393114.1" ; hgnc_id "HGNC:8636" ; level 2 ; orig_coord_info "chr11,66872024,66872159,-" ; protein_id "ENSP00000377527.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "PC--GINS4^ENST00000393955.6" ; transcript_name "PC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PI4KA--GGT3P HAVANA gene 1607 51209 . + . FI_gene_label "PI4KA^ENSG00000241973.11" ; ID "PI4KA--GGT3P^PI4KA^ENSG00000241973.11" ; ccdsid "CCDS33603.2" ; exon_id "ENSE00003649653.2" ; exon_number 1 ; gene_id "PI4KA--GGT3P^PI4KA^ENSG00000241973.11" ; gene_name PI4KA ; gene_type protein_coding ; havana_gene "OTTHUMG00000167440.4" ; havana_transcript "OTTHUMT00000075723.6" ; hgnc_id "HGNC:8983" ; level 2 ; orig_coord_info "chr22,20858570,20858725,-" ; protein_id "ENSP00000255882.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PI4KA--GGT3P^ENST00000255882.11" ; transcript_name "PI4KA-201" ; transcript_support_level 1 ; transcript_type protein_coding
PI4KA--GGT3P HAVANA mRNA 1607 51209 . + . FI_gene_label "PI4KA^ENSG00000241973.11" ; ID "PI4KA--GGT3P^ENST00000255882.11" ; Parent "PI4KA--GGT3P^PI4KA^ENSG00000241973.11" ; ccdsid "CCDS33603.2" ; exon_id "ENSE00003649653.2" ; exon_number 1 ; gene_id "PI4KA--GGT3P^PI4KA^ENSG00000241973.11" ; gene_name PI4KA ; gene_type protein_coding ; havana_gene "OTTHUMG00000167440.4" ; havana_transcript "OTTHUMT00000075723.6" ; hgnc_id "HGNC:8983" ; level 2 ; orig_coord_info "chr22,20858570,20858725,-" ; protein_id "ENSP00000255882.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PI4KA--GGT3P^ENST00000255882.11" ; transcript_name "PI4KA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIP4K2A--LRMDA HAVANA gene 10574 19711 . + . FI_gene_label "PIP4K2A^ENSG00000150867.14" ; ID "PIP4K2A--LRMDA^PIP4K2A^ENSG00000150867.14" ; exon_id "ENSE00001775875.2" ; exon_number 1 ; gene_id "PIP4K2A--LRMDA^PIP4K2A^ENSG00000150867.14" ; gene_name PIP4K2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017810.5" ; havana_transcript "OTTHUMT00000468419.1" ; hgnc_id "HGNC:8997" ; level 2 ; orig_coord_info "chr10,22591629,22591658,-" ; protein_id "ENSP00000326294.7" ; tag basic ; transcript_id "PIP4K2A--LRMDA^ENST00000323883.11" ; transcript_name "PIP4K2A-201" ; transcript_support_level 2 ; transcript_type protein_coding
PIP4K2A--LRMDA HAVANA mRNA 10574 19711 . + . FI_gene_label "PIP4K2A^ENSG00000150867.14" ; ID "PIP4K2A--LRMDA^ENST00000323883.11" ; Parent "PIP4K2A--LRMDA^PIP4K2A^ENSG00000150867.14" ; exon_id "ENSE00001775875.2" ; exon_number 1 ; gene_id "PIP4K2A--LRMDA^PIP4K2A^ENSG00000150867.14" ; gene_name PIP4K2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017810.5" ; havana_transcript "OTTHUMT00000468419.1" ; hgnc_id "HGNC:8997" ; level 2 ; orig_coord_info "chr10,22591629,22591658,-" ; protein_id "ENSP00000326294.7" ; tag basic ; transcript_id "PIP4K2A--LRMDA^ENST00000323883.11" ; transcript_name "PIP4K2A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PIP4K2A--LRMDA HAVANA gene 29005 48272 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "PIP4K2A--LRMDA^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "PIP4K2A--LRMDA^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "PIP4K2A--LRMDA^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIP4K2A--LRMDA HAVANA mRNA 29005 48272 . + . FI_gene_label "LRMDA^ENSG00000148655.15" ; ID "PIP4K2A--LRMDA^ENST00000372499.5" ; Parent "PIP4K2A--LRMDA^LRMDA^ENSG00000148655.15" ; ccdsid "CCDS7351.1" ; exon_id "ENSE00001457957.1" ; exon_number 1 ; gene_id "PIP4K2A--LRMDA^LRMDA^ENSG00000148655.15" ; gene_name LRMDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000018532.5" ; havana_transcript "OTTHUMT00000048839.1" ; hgnc_id "HGNC:23405" ; level 2 ; orig_coord_info "chr10,75782976,75783022,+" ; protein_id "ENSP00000361577.1" ; tag basic CCDS ; transcript_id "PIP4K2A--LRMDA^ENST00000372499.5" ; transcript_name "LRMDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLPBP--GAB2 HAVANA gene 1051 9396 . + . FI_gene_label "PLPBP^ENSG00000147471.12" ; ID "PLPBP--GAB2^PLPBP^ENSG00000147471.12" ; ccdsid "CCDS6096.1" ; exon_id "ENSE00002104853.2" ; exon_number 1 ; gene_id "PLPBP--GAB2^PLPBP^ENSG00000147471.12" ; gene_name PLPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000164024.5" ; havana_transcript "OTTHUMT00000376796.3" ; hgnc_id "HGNC:9457" ; level 2 ; orig_coord_info "chr8,37762660,37762758,+" ; protein_id "ENSP00000333551.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLPBP--GAB2^ENST00000328195.8" ; transcript_name "PLPBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLPBP--GAB2 HAVANA mRNA 1051 9396 . + . FI_gene_label "PLPBP^ENSG00000147471.12" ; ID "PLPBP--GAB2^ENST00000328195.8" ; Parent "PLPBP--GAB2^PLPBP^ENSG00000147471.12" ; ccdsid "CCDS6096.1" ; exon_id "ENSE00002104853.2" ; exon_number 1 ; gene_id "PLPBP--GAB2^PLPBP^ENSG00000147471.12" ; gene_name PLPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000164024.5" ; havana_transcript "OTTHUMT00000376796.3" ; hgnc_id "HGNC:9457" ; level 2 ; orig_coord_info "chr8,37762660,37762758,+" ; protein_id "ENSP00000333551.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLPBP--GAB2^ENST00000328195.8" ; transcript_name "PLPBP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLPBP--GAB2 HAVANA gene 15188 31809 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "PLPBP--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "PLPBP--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "PLPBP--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLPBP--GAB2 HAVANA mRNA 15188 31809 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "PLPBP--GAB2^ENST00000340149.6" ; Parent "PLPBP--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "PLPBP--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "PLPBP--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
POLE--SLC15A4 HAVANA gene 41802 53644 . + . FI_gene_label "SLC15A4^ENSG00000139370.12" ; ID "POLE--SLC15A4^SLC15A4^ENSG00000139370.12" ; ccdsid "CCDS9264.1" ; exon_id "ENSE00001203283.5" ; exon_number 1 ; gene_id "POLE--SLC15A4^SLC15A4^ENSG00000139370.12" ; gene_name SLC15A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168415.4" ; havana_transcript "OTTHUMT00000399663.3" ; hgnc_id "HGNC:23090" ; level 2 ; orig_coord_info "chr12,128823398,128823943,-" ; protein_id "ENSP00000266771.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "POLE--SLC15A4^ENST00000266771.10" ; transcript_name "SLC15A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
POLE--SLC15A4 HAVANA mRNA 41802 53644 . + . FI_gene_label "SLC15A4^ENSG00000139370.12" ; ID "POLE--SLC15A4^ENST00000266771.10" ; Parent "POLE--SLC15A4^SLC15A4^ENSG00000139370.12" ; ccdsid "CCDS9264.1" ; exon_id "ENSE00001203283.5" ; exon_number 1 ; gene_id "POLE--SLC15A4^SLC15A4^ENSG00000139370.12" ; gene_name SLC15A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168415.4" ; havana_transcript "OTTHUMT00000399663.3" ; hgnc_id "HGNC:23090" ; level 2 ; orig_coord_info "chr12,128823398,128823943,-" ; protein_id "ENSP00000266771.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "POLE--SLC15A4^ENST00000266771.10" ; transcript_name "SLC15A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
POLE--SLC15A4 HAVANA gene 1035 38792 . + . FI_gene_label "POLE^ENSG00000177084.18" ; ID "POLE--SLC15A4^POLE^ENSG00000177084.18" ; ccdsid "CCDS9278.1" ; exon_id "ENSE00002699740.2" ; exon_number 1 ; gene_id "POLE--SLC15A4^POLE^ENSG00000177084.18" ; gene_name POLE ; gene_type protein_coding ; havana_gene "OTTHUMG00000168045.7" ; havana_transcript "OTTHUMT00000397689.3" ; hgnc_id "HGNC:9177" ; level 2 ; orig_coord_info "chr12,132687254,132687315,-" ; protein_id "ENSP00000322570.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "POLE--SLC15A4^ENST00000320574.10" ; transcript_name "POLE-201" ; transcript_support_level 1 ; transcript_type protein_coding
POLE--SLC15A4 HAVANA mRNA 1035 38792 . + . FI_gene_label "POLE^ENSG00000177084.18" ; ID "POLE--SLC15A4^ENST00000320574.10" ; Parent "POLE--SLC15A4^POLE^ENSG00000177084.18" ; ccdsid "CCDS9278.1" ; exon_id "ENSE00002699740.2" ; exon_number 1 ; gene_id "POLE--SLC15A4^POLE^ENSG00000177084.18" ; gene_name POLE ; gene_type protein_coding ; havana_gene "OTTHUMG00000168045.7" ; havana_transcript "OTTHUMT00000397689.3" ; hgnc_id "HGNC:9177" ; level 2 ; orig_coord_info "chr12,132687254,132687315,-" ; protein_id "ENSP00000322570.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "POLE--SLC15A4^ENST00000320574.10" ; transcript_name "POLE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--CLNS1A HAVANA gene 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--CLNS1A^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--CLNS1A^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--CLNS1A^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPFIA1--CLNS1A HAVANA mRNA 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--CLNS1A^ENST00000253925.12" ; Parent "PPFIA1--CLNS1A^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--CLNS1A^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--CLNS1A^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--CLNS1A HAVANA gene 47034 55661 . + . FI_gene_label "CLNS1A^ENSG00000074201.9" ; ID "PPFIA1--CLNS1A^CLNS1A^ENSG00000074201.9" ; ccdsid "CCDS81601.1" ; exon_id "ENSE00002171031.1" ; exon_number 1 ; gene_id "PPFIA1--CLNS1A^CLNS1A^ENSG00000074201.9" ; gene_name CLNS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000165143.5" ; havana_transcript "OTTHUMT00000382157.1" ; hgnc_id "HGNC:2080" ; level 2 ; orig_coord_info "chr11,77637590,77637714,-" ; protein_id "ENSP00000263309.3" ; tag basic CCDS ; transcript_id "PPFIA1--CLNS1A^ENST00000263309.7" ; transcript_name "CLNS1A-201" ; transcript_support_level 3 ; transcript_type protein_coding
PPFIA1--CLNS1A HAVANA mRNA 47034 55661 . + . FI_gene_label "CLNS1A^ENSG00000074201.9" ; ID "PPFIA1--CLNS1A^ENST00000263309.7" ; Parent "PPFIA1--CLNS1A^CLNS1A^ENSG00000074201.9" ; ccdsid "CCDS81601.1" ; exon_id "ENSE00002171031.1" ; exon_number 1 ; gene_id "PPFIA1--CLNS1A^CLNS1A^ENSG00000074201.9" ; gene_name CLNS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000165143.5" ; havana_transcript "OTTHUMT00000382157.1" ; hgnc_id "HGNC:2080" ; level 2 ; orig_coord_info "chr11,77637590,77637714,-" ; protein_id "ENSP00000263309.3" ; tag basic CCDS ; transcript_id "PPFIA1--CLNS1A^ENST00000263309.7" ; transcript_name "CLNS1A-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
RNF169--TENM4 HAVANA gene 16613 75308 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "RNF169--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "RNF169--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
RNF169--TENM4 HAVANA mRNA 16613 75308 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "RNF169--TENM4^ENST00000278550.12" ; Parent "RNF169--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "RNF169--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RNF169--TENM4 HAVANA gene 1001 13612 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "RNF169--TENM4^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "RNF169--TENM4^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--TENM4^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF169--TENM4 HAVANA mRNA 1001 13612 . + . FI_gene_label "RNF169^ENSG00000166439.6" ; ID "RNF169--TENM4^ENST00000299563.5" ; Parent "RNF169--TENM4^RNF169^ENSG00000166439.6" ; ccdsid "CCDS41691.1" ; exon_id "ENSE00001243156.4" ; exon_number 1 ; gene_id "RNF169--TENM4^RNF169^ENSG00000166439.6" ; gene_name RNF169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165516.3" ; havana_transcript "OTTHUMT00000384741.2" ; hgnc_id "HGNC:26961" ; level 2 ; orig_coord_info "chr11,74748881,74749382,+" ; protein_id "ENSP00000299563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF169--TENM4^ENST00000299563.5" ; transcript_name "RNF169-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCAF8--RNA5SP192 HAVANA gene 1039 26188 . + . FI_gene_label "SCAF8^ENSG00000213079.10" ; ID "SCAF8--RNA5SP192^SCAF8^ENSG00000213079.10" ; ccdsid "CCDS5247.1" ; exon_id "ENSE00001428900.4" ; exon_number 1 ; gene_id "SCAF8--RNA5SP192^SCAF8^ENSG00000213079.10" ; gene_name SCAF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015877.2" ; havana_transcript "OTTHUMT00000042798.2" ; hgnc_id "HGNC:20959" ; level 2 ; orig_coord_info "chr6,154733901,154733930,+" ; protein_id "ENSP00000356146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCAF8--RNA5SP192^ENST00000367178.8" ; transcript_name "SCAF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
SCAF8--RNA5SP192 HAVANA mRNA 1039 26188 . + . FI_gene_label "SCAF8^ENSG00000213079.10" ; ID "SCAF8--RNA5SP192^ENST00000367178.8" ; Parent "SCAF8--RNA5SP192^SCAF8^ENSG00000213079.10" ; ccdsid "CCDS5247.1" ; exon_id "ENSE00001428900.4" ; exon_number 1 ; gene_id "SCAF8--RNA5SP192^SCAF8^ENSG00000213079.10" ; gene_name SCAF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015877.2" ; havana_transcript "OTTHUMT00000042798.2" ; hgnc_id "HGNC:20959" ; level 2 ; orig_coord_info "chr6,154733901,154733930,+" ; protein_id "ENSP00000356146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCAF8--RNA5SP192^ENST00000367178.8" ; transcript_name "SCAF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SCAF8--SHROOM1 HAVANA gene 31575 35565 . + . FI_gene_label "SHROOM1^ENSG00000164403.15" ; ID "SCAF8--SHROOM1^SHROOM1^ENSG00000164403.15" ; ccdsid "CCDS4161.1" ; exon_id "ENSE00001123915.3" ; exon_number 1 ; gene_id "SCAF8--SHROOM1^SHROOM1^ENSG00000164403.15" ; gene_name SHROOM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059835.5" ; havana_transcript "OTTHUMT00000133034.1" ; hgnc_id "HGNC:24084" ; level 2 ; orig_coord_info "chr5,132825163,132826140,-" ; protein_id "ENSP00000324245.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SCAF8--SHROOM1^ENST00000319854.7" ; transcript_name "SHROOM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCAF8--SHROOM1 HAVANA mRNA 31575 35565 . + . FI_gene_label "SHROOM1^ENSG00000164403.15" ; ID "SCAF8--SHROOM1^ENST00000319854.7" ; Parent "SCAF8--SHROOM1^SHROOM1^ENSG00000164403.15" ; ccdsid "CCDS4161.1" ; exon_id "ENSE00001123915.3" ; exon_number 1 ; gene_id "SCAF8--SHROOM1^SHROOM1^ENSG00000164403.15" ; gene_name SHROOM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059835.5" ; havana_transcript "OTTHUMT00000133034.1" ; hgnc_id "HGNC:24084" ; level 2 ; orig_coord_info "chr5,132825163,132826140,-" ; protein_id "ENSP00000324245.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SCAF8--SHROOM1^ENST00000319854.7" ; transcript_name "SHROOM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCAF8--SHROOM1 HAVANA gene 1039 26188 . + . FI_gene_label "SCAF8^ENSG00000213079.10" ; ID "SCAF8--SHROOM1^SCAF8^ENSG00000213079.10" ; ccdsid "CCDS5247.1" ; exon_id "ENSE00001428900.4" ; exon_number 1 ; gene_id "SCAF8--SHROOM1^SCAF8^ENSG00000213079.10" ; gene_name SCAF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015877.2" ; havana_transcript "OTTHUMT00000042798.2" ; hgnc_id "HGNC:20959" ; level 2 ; orig_coord_info "chr6,154733901,154733930,+" ; protein_id "ENSP00000356146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCAF8--SHROOM1^ENST00000367178.8" ; transcript_name "SCAF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
SCAF8--SHROOM1 HAVANA mRNA 1039 26188 . + . FI_gene_label "SCAF8^ENSG00000213079.10" ; ID "SCAF8--SHROOM1^ENST00000367178.8" ; Parent "SCAF8--SHROOM1^SCAF8^ENSG00000213079.10" ; ccdsid "CCDS5247.1" ; exon_id "ENSE00001428900.4" ; exon_number 1 ; gene_id "SCAF8--SHROOM1^SCAF8^ENSG00000213079.10" ; gene_name SCAF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015877.2" ; havana_transcript "OTTHUMT00000042798.2" ; hgnc_id "HGNC:20959" ; level 2 ; orig_coord_info "chr6,154733901,154733930,+" ; protein_id "ENSP00000356146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCAF8--SHROOM1^ENST00000367178.8" ; transcript_name "SCAF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SCAF8--SYNE1 ENSEMBL gene 29614 208061 . + . FI_gene_label "SYNE1^ENSG00000131018.24" ; ID "SCAF8--SYNE1^SYNE1^ENSG00000131018.24" ; exon_id "ENSE00003604375.1" ; exon_number 3 ; gene_id "SCAF8--SYNE1^SYNE1^ENSG00000131018.24" ; gene_name SYNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015841.14" ; hgnc_id "HGNC:17089" ; level 3 ; orig_coord_info "chr6,152628265,152628280,-" ; protein_id "ENSP00000341887.6" ; tag basic ; transcript_id "SCAF8--SYNE1^ENST00000341594.9" ; transcript_name "SYNE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
SCAF8--SYNE1 ENSEMBL mRNA 29614 208061 . + . FI_gene_label "SYNE1^ENSG00000131018.24" ; ID "SCAF8--SYNE1^ENST00000341594.9" ; Parent "SCAF8--SYNE1^SYNE1^ENSG00000131018.24" ; exon_id "ENSE00003604375.1" ; exon_number 3 ; gene_id "SCAF8--SYNE1^SYNE1^ENSG00000131018.24" ; gene_name SYNE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015841.14" ; hgnc_id "HGNC:17089" ; level 3 ; orig_coord_info "chr6,152628265,152628280,-" ; protein_id "ENSP00000341887.6" ; tag basic ; transcript_id "SCAF8--SYNE1^ENST00000341594.9" ; transcript_name "SYNE1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SCAF8--SYNE1 HAVANA gene 1039 26188 . + . FI_gene_label "SCAF8^ENSG00000213079.10" ; ID "SCAF8--SYNE1^SCAF8^ENSG00000213079.10" ; ccdsid "CCDS5247.1" ; exon_id "ENSE00001428900.4" ; exon_number 1 ; gene_id "SCAF8--SYNE1^SCAF8^ENSG00000213079.10" ; gene_name SCAF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015877.2" ; havana_transcript "OTTHUMT00000042798.2" ; hgnc_id "HGNC:20959" ; level 2 ; orig_coord_info "chr6,154733901,154733930,+" ; protein_id "ENSP00000356146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCAF8--SYNE1^ENST00000367178.8" ; transcript_name "SCAF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
SCAF8--SYNE1 HAVANA mRNA 1039 26188 . + . FI_gene_label "SCAF8^ENSG00000213079.10" ; ID "SCAF8--SYNE1^ENST00000367178.8" ; Parent "SCAF8--SYNE1^SCAF8^ENSG00000213079.10" ; ccdsid "CCDS5247.1" ; exon_id "ENSE00001428900.4" ; exon_number 1 ; gene_id "SCAF8--SYNE1^SCAF8^ENSG00000213079.10" ; gene_name SCAF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015877.2" ; havana_transcript "OTTHUMT00000042798.2" ; hgnc_id "HGNC:20959" ; level 2 ; orig_coord_info "chr6,154733901,154733930,+" ; protein_id "ENSP00000356146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCAF8--SYNE1^ENST00000367178.8" ; transcript_name "SCAF8-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TENM4--AP001992.1 HAVANA gene 1001 59696 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "TENM4--AP001992.1^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "TENM4--AP001992.1^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TENM4--AP001992.1^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
TENM4--AP001992.1 HAVANA mRNA 1001 59696 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "TENM4--AP001992.1^ENST00000278550.12" ; Parent "TENM4--AP001992.1^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "TENM4--AP001992.1^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TENM4--AP001992.1^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMX2--MRPL48 HAVANA gene 1001 5581 . + . FI_gene_label "TMX2^ENSG00000213593.10" ; ID "TMX2--MRPL48^TMX2^ENSG00000213593.10" ; ccdsid "CCDS7967.1" ; exon_id "ENSE00003846837.1" ; exon_number 1 ; gene_id "TMX2--MRPL48^TMX2^ENSG00000213593.10" ; gene_name TMX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167200.3" ; havana_transcript "OTTHUMT00000393708.2" ; hgnc_id "HGNC:30739" ; level 2 ; orig_coord_info "chr11,57712619,57712807,+" ; protein_id "ENSP00000278422.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMX2--MRPL48^ENST00000278422.9" ; transcript_name "TMX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMX2--MRPL48 HAVANA mRNA 1001 5581 . + . FI_gene_label "TMX2^ENSG00000213593.10" ; ID "TMX2--MRPL48^ENST00000278422.9" ; Parent "TMX2--MRPL48^TMX2^ENSG00000213593.10" ; ccdsid "CCDS7967.1" ; exon_id "ENSE00003846837.1" ; exon_number 1 ; gene_id "TMX2--MRPL48^TMX2^ENSG00000213593.10" ; gene_name TMX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167200.3" ; havana_transcript "OTTHUMT00000393708.2" ; hgnc_id "HGNC:30739" ; level 2 ; orig_coord_info "chr11,57712619,57712807,+" ; protein_id "ENSP00000278422.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMX2--MRPL48^ENST00000278422.9" ; transcript_name "TMX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMX2--MRPL48 HAVANA gene 8584 24411 . + . FI_gene_label "MRPL48^ENSG00000175581.14" ; ID "TMX2--MRPL48^MRPL48^ENSG00000175581.14" ; ccdsid "CCDS44676.1" ; exon_id "ENSE00002308823.2" ; exon_number 1 ; gene_id "TMX2--MRPL48^MRPL48^ENSG00000175581.14" ; gene_name MRPL48 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168048.5" ; havana_transcript "OTTHUMT00000397733.2" ; hgnc_id "HGNC:16653" ; level 2 ; orig_coord_info "chr11,73787972,73787992,+" ; protein_id "ENSP00000308717.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMX2--MRPL48^ENST00000310614.12" ; transcript_name "MRPL48-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMX2--MRPL48 HAVANA mRNA 8584 24411 . + . FI_gene_label "MRPL48^ENSG00000175581.14" ; ID "TMX2--MRPL48^ENST00000310614.12" ; Parent "TMX2--MRPL48^MRPL48^ENSG00000175581.14" ; ccdsid "CCDS44676.1" ; exon_id "ENSE00002308823.2" ; exon_number 1 ; gene_id "TMX2--MRPL48^MRPL48^ENSG00000175581.14" ; gene_name MRPL48 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168048.5" ; havana_transcript "OTTHUMT00000397733.2" ; hgnc_id "HGNC:16653" ; level 2 ; orig_coord_info "chr11,73787972,73787992,+" ; protein_id "ENSP00000308717.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMX2--MRPL48^ENST00000310614.12" ; transcript_name "MRPL48-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS13B--DNAH14 HAVANA gene 132249 183170 . + . FI_gene_label "DNAH14^ENSG00000185842.15" ; ID "VPS13B--DNAH14^DNAH14^ENSG00000185842.15" ; exon_id "ENSE00001430663.2" ; exon_number 1 ; gene_id "VPS13B--DNAH14^DNAH14^ENSG00000185842.15" ; gene_name DNAH14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037447.9" ; havana_transcript "OTTHUMT00000277120.2" ; hgnc_id "HGNC:2945" ; level 2 ; orig_coord_info "chr1,225240794,225240822,+" ; protein_id "ENSP00000328980.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "VPS13B--DNAH14^ENST00000327794.10" ; transcript_name "DNAH14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
VPS13B--DNAH14 HAVANA mRNA 132249 183170 . + . FI_gene_label "DNAH14^ENSG00000185842.15" ; ID "VPS13B--DNAH14^ENST00000327794.10" ; Parent "VPS13B--DNAH14^DNAH14^ENSG00000185842.15" ; exon_id "ENSE00001430663.2" ; exon_number 1 ; gene_id "VPS13B--DNAH14^DNAH14^ENSG00000185842.15" ; gene_name DNAH14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037447.9" ; havana_transcript "OTTHUMT00000277120.2" ; hgnc_id "HGNC:2945" ; level 2 ; orig_coord_info "chr1,225240794,225240822,+" ; protein_id "ENSP00000328980.6" ; tag mRNA_start_NF cds_start_NF ; transcript_id "VPS13B--DNAH14^ENST00000327794.10" ; transcript_name "DNAH14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
VPS13B--DNAH14 HAVANA gene 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--DNAH14^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--DNAH14^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--DNAH14^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS13B--DNAH14 HAVANA mRNA 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--DNAH14^ENST00000355155.5" ; Parent "VPS13B--DNAH14^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--DNAH14^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--DNAH14^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC069120.1--LETM2 HAVANA gene 2183 5921 . + . FI_gene_label "AC069120.1^ENSG00000253361.3" ; ID "AC069120.1--LETM2^AC069120.1^ENSG00000253361.3" ; exon_id "ENSE00002126848.1" ; exon_number 1 ; gene_id "AC069120.1--LETM2^AC069120.1^ENSG00000253361.3" ; gene_name "AC069120.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163994.4" ; havana_transcript "OTTHUMT00000376671.2" ; level 2 ; orig_coord_info "chr8,38558970,38559020,-" ; tag basic ; transcript_id "AC069120.1--LETM2^ENST00000519764.1" ; transcript_name "AC069120.1-205" ; transcript_support_level 4 ; transcript_type lncRNA
AC069120.1--LETM2 HAVANA RNA 2183 5921 . + . FI_gene_label "AC069120.1^ENSG00000253361.3" ; ID "AC069120.1--LETM2^ENST00000519764.1" ; Parent "AC069120.1--LETM2^AC069120.1^ENSG00000253361.3" ; exon_id "ENSE00002126848.1" ; exon_number 1 ; gene_id "AC069120.1--LETM2^AC069120.1^ENSG00000253361.3" ; gene_name "AC069120.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163994.4" ; havana_transcript "OTTHUMT00000376671.2" ; level 2 ; orig_coord_info "chr8,38558970,38559020,-" ; tag basic ; transcript_id "AC069120.1--LETM2^ENST00000519764.1" ; transcript_name "AC069120.1-205" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC108704.1--SLC15A4 HAVANA gene 1001 1744 . + . FI_gene_label "AC108704.1^ENSG00000274695.1" ; ID "AC108704.1--SLC15A4^AC108704.1^ENSG00000274695.1" ; exon_id "ENSE00003720998.1" ; exon_number 1 ; gene_id "AC108704.1--SLC15A4^AC108704.1^ENSG00000274695.1" ; gene_name "AC108704.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000187328.1" ; havana_transcript "OTTHUMT00000474771.1" ; level 2 ; orig_coord_info "chr12,128826836,128827579,+" ; tag basic ; transcript_id "AC108704.1--SLC15A4^ENST00000611714.1" ; transcript_name "AC108704.1-201" ; transcript_support_level NA ; transcript_type lncRNA
AC108704.1--SLC15A4 HAVANA RNA 1001 1744 . + . FI_gene_label "AC108704.1^ENSG00000274695.1" ; ID "AC108704.1--SLC15A4^ENST00000611714.1" ; Parent "AC108704.1--SLC15A4^AC108704.1^ENSG00000274695.1" ; exon_id "ENSE00003720998.1" ; exon_number 1 ; gene_id "AC108704.1--SLC15A4^AC108704.1^ENSG00000274695.1" ; gene_name "AC108704.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000187328.1" ; havana_transcript "OTTHUMT00000474771.1" ; level 2 ; orig_coord_info "chr12,128826836,128827579,+" ; tag basic ; transcript_id "AC108704.1--SLC15A4^ENST00000611714.1" ; transcript_name "AC108704.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
AP000867.4--ADGRA2 HAVANA gene 1001 1219 . + . FI_gene_label "AP000867.4^ENSG00000284625.1" ; ID "AP000867.4--ADGRA2^AP000867.4^ENSG00000284625.1" ; exon_id "ENSE00003813250.1" ; exon_number 1 ; gene_id "AP000867.4--ADGRA2^AP000867.4^ENSG00000284625.1" ; gene_name "AP000867.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192238.1" ; havana_transcript "OTTHUMT00000492977.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,71639551,71639769,+" ; tag non_submitted_evidence basic ; transcript_id "AP000867.4--ADGRA2^ENST00000641616.1" ; transcript_name "AP000867.4-201" ; transcript_type unprocessed_pseudogene
AP000867.4--ADGRA2 HAVANA RNA 1001 1219 . + . FI_gene_label "AP000867.4^ENSG00000284625.1" ; ID "AP000867.4--ADGRA2^ENST00000641616.1" ; Parent "AP000867.4--ADGRA2^AP000867.4^ENSG00000284625.1" ; exon_id "ENSE00003813250.1" ; exon_number 1 ; gene_id "AP000867.4--ADGRA2^AP000867.4^ENSG00000284625.1" ; gene_name "AP000867.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192238.1" ; havana_transcript "OTTHUMT00000492977.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,71639551,71639769,+" ; tag non_submitted_evidence basic ; transcript_id "AP000867.4--ADGRA2^ENST00000641616.1" ; transcript_name "AP000867.4-201" ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AP000867.4--INTS4 HAVANA gene 1001 1219 . + . FI_gene_label "AP000867.4^ENSG00000284625.1" ; ID "AP000867.4--INTS4^AP000867.4^ENSG00000284625.1" ; exon_id "ENSE00003813250.1" ; exon_number 1 ; gene_id "AP000867.4--INTS4^AP000867.4^ENSG00000284625.1" ; gene_name "AP000867.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192238.1" ; havana_transcript "OTTHUMT00000492977.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,71639551,71639769,+" ; tag non_submitted_evidence basic ; transcript_id "AP000867.4--INTS4^ENST00000641616.1" ; transcript_name "AP000867.4-201" ; transcript_type unprocessed_pseudogene
AP000867.4--INTS4 HAVANA RNA 1001 1219 . + . FI_gene_label "AP000867.4^ENSG00000284625.1" ; ID "AP000867.4--INTS4^ENST00000641616.1" ; Parent "AP000867.4--INTS4^AP000867.4^ENSG00000284625.1" ; exon_id "ENSE00003813250.1" ; exon_number 1 ; gene_id "AP000867.4--INTS4^AP000867.4^ENSG00000284625.1" ; gene_name "AP000867.4" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192238.1" ; havana_transcript "OTTHUMT00000492977.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,71639551,71639769,+" ; tag non_submitted_evidence basic ; transcript_id "AP000867.4--INTS4^ENST00000641616.1" ; transcript_name "AP000867.4-201" ; transcript_type unprocessed_pseudogene
L1 and L2 created:
CR381653.1--AC007326.5 HAVANA gene 1001 9094 . + . FI_gene_label "CR381653.1^ENSG00000278932.4" ; ID "CR381653.1--AC007326.5^CR381653.1^ENSG00000278932.4" ; exon_id "ENSE00003758425.1" ; exon_number 1 ; gene_id "CR381653.1--AC007326.5^CR381653.1^ENSG00000278932.4" ; gene_name "CR381653.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189442.2" ; havana_transcript "OTTHUMT00000479692.1" ; level 2 ; orig_coord_info "chr21,9325013,9325100,+" ; tag basic ; transcript_id "CR381653.1--AC007326.5^ENST00000622961.3" ; transcript_name "CR381653.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
CR381653.1--AC007326.5 HAVANA RNA 1001 9094 . + . FI_gene_label "CR381653.1^ENSG00000278932.4" ; ID "CR381653.1--AC007326.5^ENST00000622961.3" ; Parent "CR381653.1--AC007326.5^CR381653.1^ENSG00000278932.4" ; exon_id "ENSE00003758425.1" ; exon_number 1 ; gene_id "CR381653.1--AC007326.5^CR381653.1^ENSG00000278932.4" ; gene_name "CR381653.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189442.2" ; havana_transcript "OTTHUMT00000479692.1" ; level 2 ; orig_coord_info "chr21,9325013,9325100,+" ; tag basic ; transcript_id "CR381653.1--AC007326.5^ENST00000622961.3" ; transcript_name "CR381653.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CR381653.1--AC007326.5 ENSEMBL gene 15464 16691 . + . FI_gene_label "AC007326.5^ENSG00000284294.1" ; ID "CR381653.1--AC007326.5^AC007326.5^ENSG00000284294.1" ; exon_id "ENSE00003756415.1" ; exon_number 1 ; gene_id "CR381653.1--AC007326.5^AC007326.5^ENSG00000284294.1" ; gene_name "AC007326.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189196.3" ; level 3 ; orig_coord_info "chr22,18945123,18945169,+" ; transcript_id "CR381653.1--AC007326.5^ENST00000623496.1" ; transcript_name "AC007326.5-203" ; transcript_support_level 5 ; transcript_type lncRNA
CR381653.1--AC007326.5 ENSEMBL RNA 15464 16691 . + . FI_gene_label "AC007326.5^ENSG00000284294.1" ; ID "CR381653.1--AC007326.5^ENST00000623496.1" ; Parent "CR381653.1--AC007326.5^AC007326.5^ENSG00000284294.1" ; exon_id "ENSE00003756415.1" ; exon_number 1 ; gene_id "CR381653.1--AC007326.5^AC007326.5^ENSG00000284294.1" ; gene_name "AC007326.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189196.3" ; level 3 ; orig_coord_info "chr22,18945123,18945169,+" ; transcript_id "CR381653.1--AC007326.5^ENST00000623496.1" ; transcript_name "AC007326.5-203" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
INTS4--AC016813.1 HAVANA gene 33282 35797 . + . FI_gene_label "AC016813.1^ENSG00000254321.2" ; ID "INTS4--AC016813.1^AC016813.1^ENSG00000254321.2" ; exon_id "ENSE00002104452.1" ; exon_number 1 ; gene_id "INTS4--AC016813.1^AC016813.1^ENSG00000254321.2" ; gene_name "AC016813.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164086.2" ; havana_transcript "OTTHUMT00000377183.1" ; level 2 ; orig_coord_info "chr8,38704611,38704855,-" ; tag basic ; transcript_id "INTS4--AC016813.1^ENST00000521511.1" ; transcript_name "AC016813.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
INTS4--AC016813.1 HAVANA RNA 33282 35797 . + . FI_gene_label "AC016813.1^ENSG00000254321.2" ; ID "INTS4--AC016813.1^ENST00000521511.1" ; Parent "INTS4--AC016813.1^AC016813.1^ENSG00000254321.2" ; exon_id "ENSE00002104452.1" ; exon_number 1 ; gene_id "INTS4--AC016813.1^AC016813.1^ENSG00000254321.2" ; gene_name "AC016813.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164086.2" ; havana_transcript "OTTHUMT00000377183.1" ; level 2 ; orig_coord_info "chr8,38704611,38704855,-" ; tag basic ; transcript_id "INTS4--AC016813.1^ENST00000521511.1" ; transcript_name "AC016813.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
INTS4--RNF5P1 HAVANA gene 33282 33821 . + . FI_gene_label "RNF5P1^ENSG00000253570.1" ; ID "INTS4--RNF5P1^RNF5P1^ENSG00000253570.1" ; exon_id "ENSE00002128637.1" ; exon_number 1 ; gene_id "INTS4--RNF5P1^RNF5P1^ENSG00000253570.1" ; gene_name RNF5P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000163988.1" ; havana_transcript "OTTHUMT00000376659.1" ; hgnc_id "HGNC:31053" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,38600661,38601200,-" ; tag pseudo_consens basic ; transcript_id "INTS4--RNF5P1^ENST00000524091.1" ; transcript_name "RNF5P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
INTS4--RNF5P1 HAVANA RNA 33282 33821 . + . FI_gene_label "RNF5P1^ENSG00000253570.1" ; ID "INTS4--RNF5P1^ENST00000524091.1" ; Parent "INTS4--RNF5P1^RNF5P1^ENSG00000253570.1" ; exon_id "ENSE00002128637.1" ; exon_number 1 ; gene_id "INTS4--RNF5P1^RNF5P1^ENSG00000253570.1" ; gene_name RNF5P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000163988.1" ; havana_transcript "OTTHUMT00000376659.1" ; hgnc_id "HGNC:31053" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,38600661,38601200,-" ; tag pseudo_consens basic ; transcript_id "INTS4--RNF5P1^ENST00000524091.1" ; transcript_name "RNF5P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
LRP5--RN7SKP297 ENSEMBL gene 33834 34115 . + . FI_gene_label "RN7SKP297^ENSG00000223202.1" ; ID "LRP5--RN7SKP297^RN7SKP297^ENSG00000223202.1" ; exon_id "ENSE00001591088.1" ; exon_number 1 ; gene_id "LRP5--RN7SKP297^RN7SKP297^ENSG00000223202.1" ; gene_name RN7SKP297 ; gene_type misc_RNA ; hgnc_id "HGNC:46021" ; level 3 ; orig_coord_info "chr11,74685224,74685505,+" ; tag basic ; transcript_id "LRP5--RN7SKP297^ENST00000411270.1" ; transcript_name "RN7SKP297-201" ; transcript_support_level NA ; transcript_type misc_RNA
LRP5--RN7SKP297 ENSEMBL RNA 33834 34115 . + . FI_gene_label "RN7SKP297^ENSG00000223202.1" ; ID "LRP5--RN7SKP297^ENST00000411270.1" ; Parent "LRP5--RN7SKP297^RN7SKP297^ENSG00000223202.1" ; exon_id "ENSE00001591088.1" ; exon_number 1 ; gene_id "LRP5--RN7SKP297^RN7SKP297^ENSG00000223202.1" ; gene_name RN7SKP297 ; gene_type misc_RNA ; hgnc_id "HGNC:46021" ; level 3 ; orig_coord_info "chr11,74685224,74685505,+" ; tag basic ; transcript_id "LRP5--RN7SKP297^ENST00000411270.1" ; transcript_name "RN7SKP297-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
NPEPPS--RNA5SP526 ENSEMBL gene 37126 37212 . + . FI_gene_label "RNA5SP526^ENSG00000274663.1" ; ID "NPEPPS--RNA5SP526^RNA5SP526^ENSG00000274663.1" ; exon_id "ENSE00003754754.1" ; exon_number 1 ; gene_id "NPEPPS--RNA5SP526^RNA5SP526^ENSG00000274663.1" ; gene_name RNA5SP526 ; gene_type rRNA ; hgnc_id "HGNC:53795" ; level 3 ; orig_coord_info "chr17,38144201,38144287,-" ; tag basic ; transcript_id "NPEPPS--RNA5SP526^ENST00000619782.1" ; transcript_name "RNA5SP526-201" ; transcript_support_level NA ; transcript_type rRNA
NPEPPS--RNA5SP526 ENSEMBL RNA 37126 37212 . + . FI_gene_label "RNA5SP526^ENSG00000274663.1" ; ID "NPEPPS--RNA5SP526^ENST00000619782.1" ; Parent "NPEPPS--RNA5SP526^RNA5SP526^ENSG00000274663.1" ; exon_id "ENSE00003754754.1" ; exon_number 1 ; gene_id "NPEPPS--RNA5SP526^RNA5SP526^ENSG00000274663.1" ; gene_name RNA5SP526 ; gene_type rRNA ; hgnc_id "HGNC:53795" ; level 3 ; orig_coord_info "chr17,38144201,38144287,-" ; tag basic ; transcript_id "NPEPPS--RNA5SP526^ENST00000619782.1" ; transcript_name "RNA5SP526-201" ; transcript_support_level NA ; transcript_type rRNA
L1 and L2 created:
PI4KA--GGT3P HAVANA gene 56391 67584 . + . FI_gene_label "GGT3P^ENSG00000197421.10" ; ID "PI4KA--GGT3P^GGT3P^ENSG00000197421.10" ; exon_id "ENSE00001617398.1" ; exon_number 1 ; gene_id "PI4KA--GGT3P^GGT3P^ENSG00000197421.10" ; gene_name GGT3P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000150161.3" ; havana_transcript "OTTHUMT00000341281.1" ; hgnc_id "HGNC:4252" ; level 2 ; orig_coord_info "chr22,18805429,18805479,-" ; tag basic ; transcript_id "PI4KA--GGT3P^ENST00000412448.5" ; transcript_name "GGT3P-201" ; transcript_support_level 2 ; transcript_type processed_transcript
PI4KA--GGT3P HAVANA RNA 56391 67584 . + . FI_gene_label "GGT3P^ENSG00000197421.10" ; ID "PI4KA--GGT3P^ENST00000412448.5" ; Parent "PI4KA--GGT3P^GGT3P^ENSG00000197421.10" ; exon_id "ENSE00001617398.1" ; exon_number 1 ; gene_id "PI4KA--GGT3P^GGT3P^ENSG00000197421.10" ; gene_name GGT3P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000150161.3" ; havana_transcript "OTTHUMT00000341281.1" ; hgnc_id "HGNC:4252" ; level 2 ; orig_coord_info "chr22,18805429,18805479,-" ; tag basic ; transcript_id "PI4KA--GGT3P^ENST00000412448.5" ; transcript_name "GGT3P-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
SCAF8--RNA5SP192 ENSEMBL gene 29212 29331 . + . FI_gene_label "RNA5SP192^ENSG00000201274.1" ; ID "SCAF8--RNA5SP192^RNA5SP192^ENSG00000201274.1" ; exon_id "ENSE00001439167.1" ; exon_number 1 ; gene_id "SCAF8--RNA5SP192^RNA5SP192^ENSG00000201274.1" ; gene_name RNA5SP192 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43092" ; level 3 ; orig_coord_info "chr5,132848577,132848696,+" ; tag basic ; transcript_id "SCAF8--RNA5SP192^ENST00000364404.1" ; transcript_name "RNA5SP192-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
SCAF8--RNA5SP192 ENSEMBL RNA 29212 29331 . + . FI_gene_label "RNA5SP192^ENSG00000201274.1" ; ID "SCAF8--RNA5SP192^ENST00000364404.1" ; Parent "SCAF8--RNA5SP192^RNA5SP192^ENSG00000201274.1" ; exon_id "ENSE00001439167.1" ; exon_number 1 ; gene_id "SCAF8--RNA5SP192^RNA5SP192^ENSG00000201274.1" ; gene_name RNA5SP192 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43092" ; level 3 ; orig_coord_info "chr5,132848577,132848696,+" ; tag basic ; transcript_id "SCAF8--RNA5SP192^ENST00000364404.1" ; transcript_name "RNA5SP192-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
TENM4--AP001992.1 HAVANA gene 68049 68427 . + . FI_gene_label "AP001992.1^ENSG00000241170.3" ; ID "TENM4--AP001992.1^AP001992.1^ENSG00000241170.3" ; exon_id "ENSE00001890342.1" ; exon_number 1 ; gene_id "TENM4--AP001992.1^AP001992.1^ENSG00000241170.3" ; gene_name "AP001992.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000158413.3" ; havana_transcript "OTTHUMT00000350949.1" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr11,74919587,74919965,+" ; tag pseudo_consens basic ; transcript_id "TENM4--AP001992.1^ENST00000462248.1" ; transcript_name "AP001992.1-206" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
TENM4--AP001992.1 HAVANA RNA 68049 68427 . + . FI_gene_label "AP001992.1^ENSG00000241170.3" ; ID "TENM4--AP001992.1^ENST00000462248.1" ; Parent "TENM4--AP001992.1^AP001992.1^ENSG00000241170.3" ; exon_id "ENSE00001890342.1" ; exon_number 1 ; gene_id "TENM4--AP001992.1^AP001992.1^ENSG00000241170.3" ; gene_name "AP001992.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000158413.3" ; havana_transcript "OTTHUMT00000350949.1" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr11,74919587,74919965,+" ; tag pseudo_consens basic ; transcript_id "TENM4--AP001992.1^ENST00000462248.1" ; transcript_name "AP001992.1-206" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
1051 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 1 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
2197 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 77 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed