Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/c74031e45ad4dac87aabf3ddba9fd8/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/8d038b20d16e99a7413893591123e4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/8d038b20d16e99a7413893591123e4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/24a36d1d9196a6fd1fbf135356a4be/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 146849751
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	146849751
Known Splicing Events:	145510374
Partial Novel Splicing Events:	849382
Novel Splicing Events:	441590
Filtered Splicing Events:	48405

Total splicing  Junctions:	517370
Known Splicing Junctions:	277514
Partial Novel Splicing Junctions:	142518
Novel Splicing Junctions:	97338

===================================================================
Create BED file ...
Create Interact file ...