File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9bbcdfe76eebdf7c217cf2302297bf/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:10:18
                             Started mapping on |	Jun 08 10:16:46
                                    Finished on |	Jun 08 11:12:05
       Mapping speed, Million of reads per hour |	321.44

                          Number of input reads |	296352227
                      Average input read length |	260
                                    UNIQUE READS:
                   Uniquely mapped reads number |	281409832
                        Uniquely mapped reads % |	94.96%
                          Average mapped length |	260.41
                       Number of splices: Total |	291982054
            Number of splices: Annotated (sjdb) |	287493251
                       Number of splices: GT/AG |	288506147
                       Number of splices: GC/AG |	2065494
                       Number of splices: AT/AC |	266935
               Number of splices: Non-canonical |	1143478
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.92
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.79
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11676411
             % of reads mapped to multiple loci |	3.94%
        Number of reads mapped to too many loci |	659909
             % of reads mapped to too many loci |	0.22%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2263586
                 % of reads unmapped: too short |	0.76%
                Number of reads unmapped: other |	342489
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%