File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/73452805e862ae4e94fe4a771be015/.command.log
Size
6.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-9e2647-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/73452805e862ae4e94fe4a771be015/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/73452805e862ae4e94fe4a771be015/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/1f0e2de41ec5e52cbef4e6be2ce8fd/aih-tih-sc-9e2647-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/4f1aad070344e1e5abcb2bd4912be9/aih-tih-sc-9e2647-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
RAB3IP--LYZ
starfusion
arriba
CREBBP--ZSCAN32
starfusion
arriba
FAM193A--HTT
starfusion
arriba
USP30--GRIP1
starfusion
arriba
LINC00381--NKAIN2
starfusion
GLTP--USP30
starfusion
arriba
AC073264.3--TCAF1
starfusion
arriba
ZFC3H1--ZNF385D
starfusion
GUCY1B2--NKAIN2
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
SCAPER--NEO1
starfusion
arriba
CTIF--SLC14A2
starfusion
STX16--NPEPL1
starfusion
arriba
LINC02888--AHR
starfusion
AC104041.1--APBA1
starfusion
AC020550.2--APBA1
starfusion
TVP23C--CDRT4
arriba
AC079781.4--ASNS
arriba
TRAPPC12--NPM1P48
arriba
TRAPPC12--LINC01249
arriba
DDX10--LINC02550
arriba
DDX10--C11orf53
arriba
AC092807.3--DDAH1
arriba
CCDC169--SOHLH2
arriba
AL137803.1--SLC44A5
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing RAB3IP--LYZ:   0%|          | 0/26 [00:00<?, ?it/s]
Processing RAB3IP--LYZ:   4%|▍         | 1/26 [00:00<00:02,  9.24it/s]
Processing CREBBP--ZSCAN32:   4%|▍         | 1/26 [00:00<00:02,  9.24it/s]
Processing CREBBP--ZSCAN32:   8%|▊         | 2/26 [00:00<00:02,  9.47it/s]
Processing FAM193A--HTT:   8%|▊         | 2/26 [00:00<00:02,  9.47it/s]   
Processing FAM193A--HTT:  12%|█▏        | 3/26 [00:00<00:02,  9.55it/s]
Processing USP30--GRIP1:  12%|█▏        | 3/26 [00:00<00:02,  9.55it/s]
Processing USP30--GRIP1:  15%|█▌        | 4/26 [00:00<00:02,  9.59it/s]
Processing LINC00381--NKAIN2:  15%|█▌        | 4/26 [00:00<00:02,  9.59it/s]
Processing LINC00381--NKAIN2:  19%|█▉        | 5/26 [00:00<00:02,  9.60it/s]
Processing GLTP--USP30:  19%|█▉        | 5/26 [00:00<00:02,  9.60it/s]      
Processing GLTP--USP30:  23%|██▎       | 6/26 [00:00<00:02,  9.60it/s]
Processing AC073264.3--TCAF1:  23%|██▎       | 6/26 [00:00<00:02,  9.60it/s]
Processing AC073264.3--TCAF1:  27%|██▋       | 7/26 [00:00<00:01,  9.62it/s]
Processing ZFC3H1--ZNF385D:  27%|██▋       | 7/26 [00:00<00:01,  9.62it/s]  
Processing ZFC3H1--ZNF385D:  31%|███       | 8/26 [00:00<00:01,  9.63it/s]
Processing GUCY1B2--NKAIN2:  31%|███       | 8/26 [00:00<00:01,  9.63it/s]
Processing GUCY1B2--NKAIN2:  35%|███▍      | 9/26 [00:00<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  35%|███▍      | 9/26 [00:00<00:01,  9.63it/s]
Processing TLK2P1--AC110079.1:  38%|███▊      | 10/26 [00:01<00:01,  9.64it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 10/26 [00:01<00:01,  9.64it/s]  
Processing TLK2--AC240565.1:  42%|████▏     | 11/26 [00:01<00:01,  9.64it/s]
Processing SCAPER--NEO1:  42%|████▏     | 11/26 [00:01<00:01,  9.64it/s]    
Processing SCAPER--NEO1:  46%|████▌     | 12/26 [00:01<00:01,  9.64it/s]
Processing CTIF--SLC14A2:  46%|████▌     | 12/26 [00:01<00:01,  9.64it/s]
Processing CTIF--SLC14A2:  50%|█████     | 13/26 [00:01<00:01,  9.64it/s]
Processing STX16--NPEPL1:  50%|█████     | 13/26 [00:01<00:01,  9.64it/s]
Processing STX16--NPEPL1:  54%|█████▍    | 14/26 [00:01<00:01,  9.64it/s]
Processing LINC02888--AHR:  54%|█████▍    | 14/26 [00:01<00:01,  9.64it/s]
Processing LINC02888--AHR:  58%|█████▊    | 15/26 [00:01<00:01,  9.64it/s]
Processing AC104041.1--APBA1:  58%|█████▊    | 15/26 [00:01<00:01,  9.64it/s]
Processing AC104041.1--APBA1:  62%|██████▏   | 16/26 [00:01<00:01,  9.64it/s]
Processing AC020550.2--APBA1:  62%|██████▏   | 16/26 [00:01<00:01,  9.64it/s]
Processing AC020550.2--APBA1:  65%|██████▌   | 17/26 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  65%|██████▌   | 17/26 [00:01<00:00,  9.64it/s]    
Processing TVP23C--CDRT4:  69%|██████▉   | 18/26 [00:01<00:00,  9.64it/s]
Processing AC079781.4--ASNS:  69%|██████▉   | 18/26 [00:01<00:00,  9.64it/s]
Processing AC079781.4--ASNS:  73%|███████▎  | 19/26 [00:01<00:00,  9.64it/s]
Processing TRAPPC12--NPM1P48:  73%|███████▎  | 19/26 [00:01<00:00,  9.64it/s]
Processing TRAPPC12--NPM1P48:  77%|███████▋  | 20/26 [00:02<00:00,  9.64it/s]
Processing TRAPPC12--LINC01249:  77%|███████▋  | 20/26 [00:02<00:00,  9.64it/s]
Processing TRAPPC12--LINC01249:  81%|████████  | 21/26 [00:02<00:00,  9.64it/s]
Processing DDX10--LINC02550:  81%|████████  | 21/26 [00:02<00:00,  9.64it/s]   
Processing DDX10--LINC02550:  85%|████████▍ | 22/26 [00:02<00:00,  9.64it/s]
Processing DDX10--C11orf53:  85%|████████▍ | 22/26 [00:02<00:00,  9.64it/s] 
Processing DDX10--C11orf53:  88%|████████▊ | 23/26 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  88%|████████▊ | 23/26 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  92%|█████████▏| 24/26 [00:02<00:00,  9.64it/s]
Processing CCDC169--SOHLH2:  92%|█████████▏| 24/26 [00:02<00:00,  9.64it/s]  
Processing CCDC169--SOHLH2:  96%|█████████▌| 25/26 [00:02<00:00,  9.64it/s]
Processing AL137803.1--SLC44A5:  96%|█████████▌| 25/26 [00:02<00:00,  9.64it/s]
Processing AL137803.1--SLC44A5: 100%|██████████| 26/26 [00:02<00:00,  9.64it/s]
Processing AL137803.1--SLC44A5: 100%|██████████| 26/26 [00:02<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory