Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c9c88734d60ae422e0ad924c1a7c9b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c9c88734d60ae422e0ad924c1a7c9b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c876e717d30e0a03a33edf29692dc4/aih-tih-sc-45523c-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/381364c0b884fcd6b5a5b1e758c6c7/aih-tih-sc-45523c-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
KIAA1958--NTRK2
starfusion
arriba
DDX5--SMURF2
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
ERC1--RASSF7
starfusion
arriba
WWP2--MPHOSPH6
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
AC092807.3--DDAH1
arriba
LMNTD2--ERC1
arriba
NAE1--CAPNS2
arriba
ZFHX3--CNTNAP4
arriba
CPSF7--PIEZO2
arriba
CPSF7--AP005139.1
arriba
DHX38--WWOX
arriba
TXNL4B--CTCF
arriba
TXNL4B--CARMIL2
arriba
TLK2--FAM157A
arriba

  0%|          | 0/22 [00:00<?, ?it/s]
Processing KIAA1958--NTRK2:   0%|          | 0/22 [00:00<?, ?it/s]
Processing KIAA1958--NTRK2:   5%|▍         | 1/22 [00:00<00:02,  9.16it/s]
Processing DDX5--SMURF2:   5%|▍         | 1/22 [00:00<00:02,  9.16it/s]   
Processing DDX5--SMURF2:   9%|▉         | 2/22 [00:00<00:02,  9.44it/s]
Processing FSIP1--AC013652.1:   9%|▉         | 2/22 [00:00<00:02,  9.44it/s]
Processing FSIP1--AC013652.1:  14%|█▎        | 3/22 [00:00<00:01,  9.54it/s]
Processing TLK2P1--AC110079.1:  14%|█▎        | 3/22 [00:00<00:01,  9.54it/s]
Processing TLK2P1--AC110079.1:  18%|█▊        | 4/22 [00:00<00:01,  9.58it/s]
Processing TLK2--AC240565.1:  18%|█▊        | 4/22 [00:00<00:01,  9.58it/s]  
Processing TLK2--AC240565.1:  23%|██▎       | 5/22 [00:00<00:01,  9.61it/s]
Processing ERC1--RASSF7:  23%|██▎       | 5/22 [00:00<00:01,  9.61it/s]    
Processing ERC1--RASSF7:  27%|██▋       | 6/22 [00:00<00:01,  9.62it/s]
Processing WWP2--MPHOSPH6:  27%|██▋       | 6/22 [00:00<00:01,  9.62it/s]
Processing WWP2--MPHOSPH6:  32%|███▏      | 7/22 [00:00<00:01,  9.63it/s]
Processing STX16--NPEPL1:  32%|███▏      | 7/22 [00:00<00:01,  9.63it/s] 
Processing STX16--NPEPL1:  36%|███▋      | 8/22 [00:00<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  36%|███▋      | 8/22 [00:00<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  41%|████      | 9/22 [00:00<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC2:  41%|████      | 9/22 [00:00<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC2:  45%|████▌     | 10/22 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC1:  45%|████▌     | 10/22 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHAC1:  50%|█████     | 11/22 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHA13:  50%|█████     | 11/22 [00:01<00:01,  9.64it/s]
Processing PCDHA11--PCDHA13:  55%|█████▍    | 12/22 [00:01<00:01,  9.61it/s]
Processing AC092807.3--DDAH1:  55%|█████▍    | 12/22 [00:01<00:01,  9.61it/s]
Processing AC092807.3--DDAH1:  59%|█████▉    | 13/22 [00:01<00:00,  9.58it/s]
Processing LMNTD2--ERC1:  59%|█████▉    | 13/22 [00:01<00:00,  9.58it/s]     
Processing LMNTD2--ERC1:  64%|██████▎   | 14/22 [00:01<00:00,  9.57it/s]
Processing NAE1--CAPNS2:  64%|██████▎   | 14/22 [00:01<00:00,  9.57it/s]
Processing NAE1--CAPNS2:  68%|██████▊   | 15/22 [00:01<00:00,  9.55it/s]
Processing ZFHX3--CNTNAP4:  68%|██████▊   | 15/22 [00:01<00:00,  9.55it/s]
Processing ZFHX3--CNTNAP4:  73%|███████▎  | 16/22 [00:01<00:00,  9.55it/s]
Processing CPSF7--PIEZO2:  73%|███████▎  | 16/22 [00:01<00:00,  9.55it/s] 
Processing CPSF7--PIEZO2:  77%|███████▋  | 17/22 [00:01<00:00,  9.52it/s]
Processing CPSF7--AP005139.1:  77%|███████▋  | 17/22 [00:01<00:00,  9.52it/s]
Processing CPSF7--AP005139.1:  82%|████████▏ | 18/22 [00:01<00:00,  9.52it/s]
Processing DHX38--WWOX:  82%|████████▏ | 18/22 [00:01<00:00,  9.52it/s]      
Processing DHX38--WWOX:  86%|████████▋ | 19/22 [00:01<00:00,  9.52it/s]
Processing TXNL4B--CTCF:  86%|████████▋ | 19/22 [00:01<00:00,  9.52it/s]
Processing TXNL4B--CTCF:  91%|█████████ | 20/22 [00:02<00:00,  9.52it/s]
Processing TXNL4B--CARMIL2:  91%|█████████ | 20/22 [00:02<00:00,  9.52it/s]
Processing TXNL4B--CARMIL2:  95%|█████████▌| 21/22 [00:02<00:00,  9.52it/s]
Processing TLK2--FAM157A:  95%|█████████▌| 21/22 [00:02<00:00,  9.52it/s]  
Processing TLK2--FAM157A: 100%|██████████| 22/22 [00:02<00:00,  9.52it/s]
Processing TLK2--FAM157A: 100%|██████████| 22/22 [00:02<00:00,  9.56it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory