Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/55b7d293d30d47f691cb1654c3aac3/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/55b7d293d30d47f691cb1654c3aac3/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/3f207b8487d879ed1b515ee85e4eb2/aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:44:31.612 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:44:31 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:44:31 GMT 2026] Executing as ?@nf-8b55b7d293d30d47f691cb1654c3aac3-bbc2d-rhgvq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:44:31 MarkDuplicates Start of doWork freeMemory: 105827544; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:44:31 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:44:31 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:44:36 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,053,948 INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 2538 as yet unmatched pairs. 969 records in RAM. INFO 2026-06-08 08:44:38 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:1,722,717 INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 3460 as yet unmatched pairs. 78 records in RAM. INFO 2026-06-08 08:44:40 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,206,164 INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 5082 as yet unmatched pairs. 27 records in RAM. INFO 2026-06-08 08:44:41 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,358,792 INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 7928 as yet unmatched pairs. 1276 records in RAM. INFO 2026-06-08 08:44:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,037,641 INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 8898 as yet unmatched pairs. 847 records in RAM. INFO 2026-06-08 08:44:46 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:11,240,517 INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 9829 as yet unmatched pairs. 249 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:15,638,322 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 11300 as yet unmatched pairs. 143 records in RAM. INFO 2026-06-08 08:44:50 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:17,079,200 INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 12644 as yet unmatched pairs. 22 records in RAM. INFO 2026-06-08 08:44:52 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:19,655,026 INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 14758 as yet unmatched pairs. 658 records in RAM. INFO 2026-06-08 08:44:54 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:21,831,760 INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 16293 as yet unmatched pairs. 727 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:21,885,378 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 17741 as yet unmatched pairs. 696 records in RAM. INFO 2026-06-08 08:44:58 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:23,692,608 INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 20028 as yet unmatched pairs. 1443 records in RAM. INFO 2026-06-08 08:45:00 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:26,180,457 INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 19996 as yet unmatched pairs. 54 records in RAM. INFO 2026-06-08 08:45:02 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:27,551,725 INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 21836 as yet unmatched pairs. 448 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:31,577,218 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 25368 as yet unmatched pairs. 2563 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:32,964,568 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 24449 as yet unmatched pairs. 103 records in RAM. INFO 2026-06-08 08:45:07 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:36,286,931 INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 25895 as yet unmatched pairs. 138 records in RAM. INFO 2026-06-08 08:45:08 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:39,447,437 INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 27341 as yet unmatched pairs. 212 records in RAM. INFO 2026-06-08 08:45:10 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:42,696,903 INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 28807 as yet unmatched pairs. 332 records in RAM. INFO 2026-06-08 08:45:12 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:43,981,783 INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 30017 as yet unmatched pairs. 88 records in RAM. INFO 2026-06-08 08:45:13 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:46,220,153 INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 31385 as yet unmatched pairs. 49 records in RAM. INFO 2026-06-08 08:45:15 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:46,405,031 INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 33150 as yet unmatched pairs. 211 records in RAM. INFO 2026-06-08 08:45:17 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:51,363,988 INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 34775 as yet unmatched pairs. 290 records in RAM. INFO 2026-06-08 08:45:19 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:54,045,706 INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 37126 as yet unmatched pairs. 1300 records in RAM. INFO 2026-06-08 08:45:20 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:61,787,814 INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 37649 as yet unmatched pairs. 445 records in RAM. INFO 2026-06-08 08:45:22 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,934 INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 38850 as yet unmatched pairs. 328 records in RAM. INFO 2026-06-08 08:45:23 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:81,943,663 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 40331 as yet unmatched pairs. 582 records in RAM. INFO 2026-06-08 08:45:25 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:90,020,883 INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 41195 as yet unmatched pairs. 154 records in RAM. INFO 2026-06-08 08:45:27 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:100,565,501 INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 42288 as yet unmatched pairs. 16 records in RAM. INFO 2026-06-08 08:45:29 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:109,629,184 INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 43879 as yet unmatched pairs. 237 records in RAM. INFO 2026-06-08 08:45:31 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:112,525,379 INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 45052 as yet unmatched pairs. 105 records in RAM. INFO 2026-06-08 08:45:34 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:115,976,623 INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 46261 as yet unmatched pairs. 49 records in RAM. INFO 2026-06-08 08:45:36 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:119,940,595 INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 48014 as yet unmatched pairs. 449 records in RAM. INFO 2026-06-08 08:45:37 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:144,906,031 INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 48597 as yet unmatched pairs. 216 records in RAM. INFO 2026-06-08 08:45:39 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:146,135,435 INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 49567 as yet unmatched pairs. 180 records in RAM. INFO 2026-06-08 08:45:40 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:148,577,179 INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 49989 as yet unmatched pairs. 96 records in RAM. INFO 2026-06-08 08:45:41 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:149,925,932 INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 50752 as yet unmatched pairs. 132 records in RAM. INFO 2026-06-08 08:45:43 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:150,966,504 INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 52463 as yet unmatched pairs. 470 records in RAM. INFO 2026-06-08 08:45:44 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:153,535,256 INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 53369 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:45:47 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:154,173,180 INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 56516 as yet unmatched pairs. 1729 records in RAM. INFO 2026-06-08 08:45:48 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:155,052,698 INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 56413 as yet unmatched pairs. 211 records in RAM. INFO 2026-06-08 08:45:49 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:155,679,485 INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 58107 as yet unmatched pairs. 576 records in RAM. INFO 2026-06-08 08:45:51 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:156,245,543 INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 59370 as yet unmatched pairs. 162 records in RAM. INFO 2026-06-08 08:45:52 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:159,781,027 INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 61158 as yet unmatched pairs. 391 records in RAM. INFO 2026-06-08 08:45:54 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:161,362,470 INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 62311 as yet unmatched pairs. 147 records in RAM. INFO 2026-06-08 08:45:56 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:167,553,527 INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 63871 as yet unmatched pairs. 512 records in RAM. INFO 2026-06-08 08:45:58 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,291 INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 72321 as yet unmatched pairs. 7435 records in RAM. INFO 2026-06-08 08:45:59 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:173,486,314 INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 66702 as yet unmatched pairs. 481 records in RAM. INFO 2026-06-08 08:46:01 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:182,385,403 INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 67905 as yet unmatched pairs. 325 records in RAM. INFO 2026-06-08 08:46:03 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:186,332,303 INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 69187 as yet unmatched pairs. 343 records in RAM. INFO 2026-06-08 08:46:04 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:201,718,574 INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 70091 as yet unmatched pairs. 55 records in RAM. INFO 2026-06-08 08:46:05 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:204,155,089 INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 71559 as yet unmatched pairs. 135 records in RAM. INFO 2026-06-08 08:46:07 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:206,056,862 INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 73066 as yet unmatched pairs. 237 records in RAM. INFO 2026-06-08 08:46:09 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:211,372,625 INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 74183 as yet unmatched pairs. 90 records in RAM. INFO 2026-06-08 08:46:10 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:223,744,152 INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 75605 as yet unmatched pairs. 178 records in RAM. INFO 2026-06-08 08:46:11 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:227,733,539 INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 77005 as yet unmatched pairs. 324 records in RAM. INFO 2026-06-08 08:46:13 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:228,371,938 INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 78453 as yet unmatched pairs. 50 records in RAM. INFO 2026-06-08 08:46:15 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:234,665,154 INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 80250 as yet unmatched pairs. 3 records in RAM. INFO 2026-06-08 08:46:16 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:244,854,975 INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 82452 as yet unmatched pairs. 935 records in RAM. INFO 2026-06-08 08:46:19 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr2:3,498,942 INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 83212 as yet unmatched pairs. 82380 records in RAM. INFO 2026-06-08 08:46:21 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:15,379,798 INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 84602 as yet unmatched pairs. 83741 records in RAM. INFO 2026-06-08 08:46:23 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:23,562,317 INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 86186 as yet unmatched pairs. 85317 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:27,036,563 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 87831 as yet unmatched pairs. 86933 records in RAM. INFO 2026-06-08 08:46:26 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:28,620,618 INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 88822 as yet unmatched pairs. 87919 records in RAM. INFO 2026-06-08 08:46:28 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,254 INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 125105 as yet unmatched pairs. 86273 records in RAM. INFO 2026-06-08 08:46:31 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 506537 as yet unmatched pairs. 61113 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 724279 as yet unmatched pairs. 47207 records in RAM. INFO 2026-06-08 08:46:34 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:36,867,841 INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 777484 as yet unmatched pairs. 43120 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,199 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 776155 as yet unmatched pairs. 41767 records in RAM. INFO 2026-06-08 08:46:37 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:44,313,864 INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 778325 as yet unmatched pairs. 43926 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:47,832,964 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 773372 as yet unmatched pairs. 38961 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:54,982,563 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 772820 as yet unmatched pairs. 38391 records in RAM. INFO 2026-06-08 08:46:42 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:62,874,413 INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 770819 as yet unmatched pairs. 36378 records in RAM. INFO 2026-06-08 08:46:44 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:69,812,667 INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 771217 as yet unmatched pairs. 36770 records in RAM. INFO 2026-06-08 08:46:46 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:73,080,416 INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 768249 as yet unmatched pairs. 33784 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:74,457,740 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 766921 as yet unmatched pairs. 32454 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:85,542,958 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 765698 as yet unmatched pairs. 31215 records in RAM. INFO 2026-06-08 08:46:50 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:91,767,047 INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 764150 as yet unmatched pairs. 29658 records in RAM. INFO 2026-06-08 08:46:52 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:97,245,849 INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 762801 as yet unmatched pairs. 28300 records in RAM. INFO 2026-06-08 08:46:54 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:101,888,823 INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 761482 as yet unmatched pairs. 26979 records in RAM. INFO 2026-06-08 08:46:55 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,448 INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 760670 as yet unmatched pairs. 26158 records in RAM. INFO 2026-06-08 08:46:57 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,106 INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 759664 as yet unmatched pairs. 25147 records in RAM. INFO 2026-06-08 08:46:58 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:113,242,030 INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 761992 as yet unmatched pairs. 27470 records in RAM. INFO 2026-06-08 08:47:00 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:127,048,610 INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 757816 as yet unmatched pairs. 23277 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:131,518,558 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 755737 as yet unmatched pairs. 21192 records in RAM. INFO 2026-06-08 08:47:03 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:151,366,204 INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 754513 as yet unmatched pairs. 19952 records in RAM. INFO 2026-06-08 08:47:05 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:161,341,107 INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 753248 as yet unmatched pairs. 18673 records in RAM. INFO 2026-06-08 08:47:08 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 3s. Last read position: chr2:169,174,138 INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 753548 as yet unmatched pairs. 18945 records in RAM. INFO 2026-06-08 08:47:10 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:169,244,751 INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 751818 as yet unmatched pairs. 17207 records in RAM. INFO 2026-06-08 08:47:12 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:172,487,414 INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 749776 as yet unmatched pairs. 15156 records in RAM. INFO 2026-06-08 08:47:13 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:178,567,685 INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 748073 as yet unmatched pairs. 13437 records in RAM. INFO 2026-06-08 08:47:15 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:186,663,800 INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 746990 as yet unmatched pairs. 12344 records in RAM. INFO 2026-06-08 08:47:17 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:191,390,276 INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 745581 as yet unmatched pairs. 10924 records in RAM. INFO 2026-06-08 08:47:19 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:200,856,891 INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 744658 as yet unmatched pairs. 9986 records in RAM. INFO 2026-06-08 08:47:21 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:206,162,572 INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 743931 as yet unmatched pairs. 9251 records in RAM. INFO 2026-06-08 08:47:22 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,702 INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 743661 as yet unmatched pairs. 8954 records in RAM. INFO 2026-06-08 08:47:24 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:217,818,034 INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 742501 as yet unmatched pairs. 7780 records in RAM. INFO 2026-06-08 08:47:26 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:218,580,510 INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 739533 as yet unmatched pairs. 4809 records in RAM. INFO 2026-06-08 08:47:27 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:226,864,868 INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 738273 as yet unmatched pairs. 3498 records in RAM. INFO 2026-06-08 08:47:29 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:233,672,510 INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 737287 as yet unmatched pairs. 2500 records in RAM. INFO 2026-06-08 08:47:30 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:241,157,820 INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 735618 as yet unmatched pairs. 817 records in RAM. INFO 2026-06-08 08:47:33 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr3:9,789,851 INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 734150 as yet unmatched pairs. 33897 records in RAM. INFO 2026-06-08 08:47:34 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:14,493,676 INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 732613 as yet unmatched pairs. 32353 records in RAM. INFO 2026-06-08 08:47:36 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:31,623,826 INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 731491 as yet unmatched pairs. 31200 records in RAM. INFO 2026-06-08 08:47:37 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:40,310,952 INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 730212 as yet unmatched pairs. 29906 records in RAM. INFO 2026-06-08 08:47:39 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:46,922,302 INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 728885 as yet unmatched pairs. 28570 records in RAM. INFO 2026-06-08 08:47:41 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:48,599,634 INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 727746 as yet unmatched pairs. 27422 records in RAM. INFO 2026-06-08 08:47:42 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:49,131,536 INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 726302 as yet unmatched pairs. 25973 records in RAM. INFO 2026-06-08 08:47:44 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:50,302,398 INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 724598 as yet unmatched pairs. 24266 records in RAM. INFO 2026-06-08 08:47:46 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:52,510,011 INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 723263 as yet unmatched pairs. 22928 records in RAM. INFO 2026-06-08 08:47:47 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:59,748,996 INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 721567 as yet unmatched pairs. 21224 records in RAM. INFO 2026-06-08 08:47:49 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:93,893,099 INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 720720 as yet unmatched pairs. 20350 records in RAM. INFO 2026-06-08 08:47:51 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:107,798,557 INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 719248 as yet unmatched pairs. 18865 records in RAM. INFO 2026-06-08 08:47:52 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:114,615,548 INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 717939 as yet unmatched pairs. 17549 records in RAM. INFO 2026-06-08 08:47:54 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:122,699,701 INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 717805 as yet unmatched pairs. 17402 records in RAM. INFO 2026-06-08 08:47:56 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:123,700,647 INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 715782 as yet unmatched pairs. 15369 records in RAM. INFO 2026-06-08 08:47:57 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:126,158,626 INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 715155 as yet unmatched pairs. 14729 records in RAM. INFO 2026-06-08 08:47:59 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:129,315,270 INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 712438 as yet unmatched pairs. 12006 records in RAM. INFO 2026-06-08 08:48:01 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:132,672,094 INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 711194 as yet unmatched pairs. 10749 records in RAM. INFO 2026-06-08 08:48:02 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:139,374,553 INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 709724 as yet unmatched pairs. 9257 records in RAM. INFO 2026-06-08 08:48:04 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:149,520,951 INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 709320 as yet unmatched pairs. 8838 records in RAM. INFO 2026-06-08 08:48:06 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:158,660,901 INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 707054 as yet unmatched pairs. 6569 records in RAM. INFO 2026-06-08 08:48:09 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 3s. Last read position: chr3:174,035,500 INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 705757 as yet unmatched pairs. 5263 records in RAM. INFO 2026-06-08 08:48:11 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:184,245,748 INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 704568 as yet unmatched pairs. 4064 records in RAM. INFO 2026-06-08 08:48:13 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:187,726,742 INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 703518 as yet unmatched pairs. 3010 records in RAM. INFO 2026-06-08 08:48:15 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:195,529,803 INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 701935 as yet unmatched pairs. 1416 records in RAM. INFO 2026-06-08 08:48:16 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:196,812,794 INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 700994 as yet unmatched pairs. 465 records in RAM. INFO 2026-06-08 08:48:18 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:1,237,172 INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 700338 as yet unmatched pairs. 25175 records in RAM. INFO 2026-06-08 08:48:20 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:2,831,958 INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 698655 as yet unmatched pairs. 23487 records in RAM. INFO 2026-06-08 08:48:22 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:6,641,092 INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 696582 as yet unmatched pairs. 21409 records in RAM. INFO 2026-06-08 08:48:23 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:15,003,566 INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 694958 as yet unmatched pairs. 19775 records in RAM. INFO 2026-06-08 08:48:25 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:25,333,916 INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 693657 as yet unmatched pairs. 18463 records in RAM. INFO 2026-06-08 08:48:27 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:40,436,531 INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 692591 as yet unmatched pairs. 17394 records in RAM. INFO 2026-06-08 08:48:28 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:55,161,372 INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 690980 as yet unmatched pairs. 15764 records in RAM. INFO 2026-06-08 08:48:30 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:68,951,608 INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 689807 as yet unmatched pairs. 14583 records in RAM. INFO 2026-06-08 08:48:32 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:76,174,183 INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 688472 as yet unmatched pairs. 13242 records in RAM. INFO 2026-06-08 08:48:34 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:82,867,299 INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 687642 as yet unmatched pairs. 12406 records in RAM. INFO 2026-06-08 08:48:35 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:87,134,535 INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 686372 as yet unmatched pairs. 11128 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:88,750,524 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 685260 as yet unmatched pairs. 10014 records in RAM. INFO 2026-06-08 08:48:39 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:107,908,560 INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 683514 as yet unmatched pairs. 8246 records in RAM. INFO 2026-06-08 08:48:40 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:113,513,328 INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 682417 as yet unmatched pairs. 7142 records in RAM. INFO 2026-06-08 08:48:42 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:127,812,821 INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 681094 as yet unmatched pairs. 5814 records in RAM. INFO 2026-06-08 08:48:44 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:145,112,235 INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 679825 as yet unmatched pairs. 4536 records in RAM. INFO 2026-06-08 08:48:47 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 3s. Last read position: chr4:154,547,021 INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 678752 as yet unmatched pairs. 3442 records in RAM. INFO 2026-06-08 08:48:50 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:174,237,381 INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 677430 as yet unmatched pairs. 2091 records in RAM. INFO 2026-06-08 08:48:51 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:186,588,593 INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 676757 as yet unmatched pairs. 1408 records in RAM. INFO 2026-06-08 08:48:53 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:864,526 INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 674935 as yet unmatched pairs. 41807 records in RAM. INFO 2026-06-08 08:48:55 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:9,202,032 INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 673561 as yet unmatched pairs. 40431 records in RAM. INFO 2026-06-08 08:48:57 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,992 INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 672316 as yet unmatched pairs. 39177 records in RAM. INFO 2026-06-08 08:48:59 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:32,015,865 INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 670761 as yet unmatched pairs. 37611 records in RAM. INFO 2026-06-08 08:49:01 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:37,230,923 INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 669702 as yet unmatched pairs. 36537 records in RAM. INFO 2026-06-08 08:49:02 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:43,547,796 INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 668645 as yet unmatched pairs. 35468 records in RAM. INFO 2026-06-08 08:49:04 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:58,974,658 INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 667086 as yet unmatched pairs. 33899 records in RAM. INFO 2026-06-08 08:49:06 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:69,862,687 INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 665762 as yet unmatched pairs. 32558 records in RAM. INFO 2026-06-08 08:49:07 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:73,504,390 INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 665707 as yet unmatched pairs. 32495 records in RAM. INFO 2026-06-08 08:49:09 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:79,120,431 INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 663947 as yet unmatched pairs. 30729 records in RAM. INFO 2026-06-08 08:49:11 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,256 INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 662437 as yet unmatched pairs. 29208 records in RAM. INFO 2026-06-08 08:49:13 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:103,138,428 INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 661161 as yet unmatched pairs. 27919 records in RAM. INFO 2026-06-08 08:49:15 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr5:122,066,724 INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 660130 as yet unmatched pairs. 26868 records in RAM. INFO 2026-06-08 08:49:17 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr5:132,734,352 INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 658630 as yet unmatched pairs. 25356 records in RAM. INFO 2026-06-08 08:49:19 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,401 INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 657475 as yet unmatched pairs. 24186 records in RAM. INFO 2026-06-08 08:49:21 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr5:139,528,862 INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 656911 as yet unmatched pairs. 23615 records in RAM. INFO 2026-06-08 08:49:22 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:141,183,861 INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 655942 as yet unmatched pairs. 22543 records in RAM. INFO 2026-06-08 08:49:24 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:141,854,411 INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 653872 as yet unmatched pairs. 20467 records in RAM. INFO 2026-06-08 08:49:26 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:149,509,942 INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 652697 as yet unmatched pairs. 19268 records in RAM. INFO 2026-06-08 08:49:28 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,059 INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 655667 as yet unmatched pairs. 22233 records in RAM. INFO 2026-06-08 08:49:30 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr5:150,403,173 INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 665877 as yet unmatched pairs. 32441 records in RAM. INFO 2026-06-08 08:49:31 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,155 INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 684476 as yet unmatched pairs. 51033 records in RAM. INFO 2026-06-08 08:49:33 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,265 INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 659376 as yet unmatched pairs. 25932 records in RAM. INFO 2026-06-08 08:49:35 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:151,026,882 INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 646750 as yet unmatched pairs. 13306 records in RAM. INFO 2026-06-08 08:49:37 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:154,803,547 INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 643995 as yet unmatched pairs. 10537 records in RAM. INFO 2026-06-08 08:49:39 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:168,760,933 INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 642507 as yet unmatched pairs. 9028 records in RAM. INFO 2026-06-08 08:49:40 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,765 INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 649937 as yet unmatched pairs. 16455 records in RAM. INFO 2026-06-08 08:49:43 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr5:176,347,700 INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 640200 as yet unmatched pairs. 6716 records in RAM. INFO 2026-06-08 08:49:45 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:177,594,254 INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 638695 as yet unmatched pairs. 5205 records in RAM. INFO 2026-06-08 08:49:47 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:179,622,958 INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 637062 as yet unmatched pairs. 3558 records in RAM. INFO 2026-06-08 08:49:49 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,530 INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 637479 as yet unmatched pairs. 3974 records in RAM. INFO 2026-06-08 08:49:51 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:181,237,031 INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 636345 as yet unmatched pairs. 2832 records in RAM. INFO 2026-06-08 08:49:53 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr6:4,935,546 INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 632709 as yet unmatched pairs. 55369 records in RAM. INFO 2026-06-08 08:49:55 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:11,191,157 INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 631422 as yet unmatched pairs. 54072 records in RAM. INFO 2026-06-08 08:49:57 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:24,706,211 INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 630530 as yet unmatched pairs. 53150 records in RAM. INFO 2026-06-08 08:49:59 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:26,055,805 INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 629296 as yet unmatched pairs. 51903 records in RAM. INFO 2026-06-08 08:50:01 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:26,458,077 INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 628024 as yet unmatched pairs. 50630 records in RAM. INFO 2026-06-08 08:50:02 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,580 INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 627388 as yet unmatched pairs. 49984 records in RAM. INFO 2026-06-08 08:50:04 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:30,007,560 INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 625379 as yet unmatched pairs. 47969 records in RAM. INFO 2026-06-08 08:50:07 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr6:30,740,192 INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 624326 as yet unmatched pairs. 46894 records in RAM. INFO 2026-06-08 08:50:09 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,075 INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 626590 as yet unmatched pairs. 49151 records in RAM. INFO 2026-06-08 08:50:11 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,624,268 INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 621828 as yet unmatched pairs. 44383 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:31,690,539 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 619994 as yet unmatched pairs. 42543 records in RAM. INFO 2026-06-08 08:50:14 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,204 INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 619726 as yet unmatched pairs. 42273 records in RAM. INFO 2026-06-08 08:50:16 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,984,142 INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 619076 as yet unmatched pairs. 41616 records in RAM. INFO 2026-06-08 08:50:17 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:31,996,872 INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 623243 as yet unmatched pairs. 45782 records in RAM. INFO 2026-06-08 08:50:19 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:32,016,840 INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 624612 as yet unmatched pairs. 47147 records in RAM. INFO 2026-06-08 08:50:20 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:32,029,708 INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 620044 as yet unmatched pairs. 42579 records in RAM. INFO 2026-06-08 08:50:22 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:32,187,868 INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 614532 as yet unmatched pairs. 37053 records in RAM. INFO 2026-06-08 08:50:24 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,745,820 INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 613935 as yet unmatched pairs. 36454 records in RAM. INFO 2026-06-08 08:50:26 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:33,073,471 INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 612415 as yet unmatched pairs. 34930 records in RAM. INFO 2026-06-08 08:50:27 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:33,413,407 INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 610540 as yet unmatched pairs. 33044 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr6:35,290,667 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 608784 as yet unmatched pairs. 31278 records in RAM. INFO 2026-06-08 08:50:33 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr6:37,474,623 INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 607369 as yet unmatched pairs. 29844 records in RAM. INFO 2026-06-08 08:50:34 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:43,048,465 INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 606160 as yet unmatched pairs. 28631 records in RAM. INFO 2026-06-08 08:50:36 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:43,770,709 INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 609942 as yet unmatched pairs. 32410 records in RAM. INFO 2026-06-08 08:50:38 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:43,777,595 INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 606293 as yet unmatched pairs. 28758 records in RAM. INFO 2026-06-08 08:50:40 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:44,254,988 INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 601506 as yet unmatched pairs. 23964 records in RAM. INFO 2026-06-08 08:50:42 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:52,026,161 INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 600248 as yet unmatched pairs. 22694 records in RAM. INFO 2026-06-08 08:50:44 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:57,147,149 INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 598712 as yet unmatched pairs. 21128 records in RAM. INFO 2026-06-08 08:50:45 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:78,988,249 INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 597587 as yet unmatched pairs. 19984 records in RAM. INFO 2026-06-08 08:50:47 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:89,342,354 INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 596371 as yet unmatched pairs. 18767 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,710 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 599066 as yet unmatched pairs. 21450 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:111,373,576 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 593757 as yet unmatched pairs. 16124 records in RAM. INFO 2026-06-08 08:50:53 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:122,781,181 INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 592498 as yet unmatched pairs. 14852 records in RAM. INFO 2026-06-08 08:50:55 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:131,733,634 INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 591584 as yet unmatched pairs. 13923 records in RAM. INFO 2026-06-08 08:50:58 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:139,373,153 INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 590756 as yet unmatched pairs. 13093 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:147,359,214 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 588165 as yet unmatched pairs. 10499 records in RAM. INFO 2026-06-08 08:51:01 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,471 INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 591887 as yet unmatched pairs. 14201 records in RAM. INFO 2026-06-08 08:51:03 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:151,352,081 INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 588545 as yet unmatched pairs. 10856 records in RAM. INFO 2026-06-08 08:51:05 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,423 INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 584552 as yet unmatched pairs. 6854 records in RAM. INFO 2026-06-08 08:51:06 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:158,767,478 INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 588222 as yet unmatched pairs. 10517 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,321 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 584074 as yet unmatched pairs. 6369 records in RAM. INFO 2026-06-08 08:51:10 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:160,258,593 INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 581597 as yet unmatched pairs. 3886 records in RAM. INFO 2026-06-08 08:51:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:166,999,482 INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 578652 as yet unmatched pairs. 931 records in RAM. INFO 2026-06-08 08:51:14 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr7:1,476,263 INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 577187 as yet unmatched pairs. 42601 records in RAM. INFO 2026-06-08 08:51:17 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr7:5,230,858 INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 575094 as yet unmatched pairs. 40494 records in RAM. INFO 2026-06-08 08:51:19 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,266 INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 576086 as yet unmatched pairs. 41476 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:18,634,626 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 572224 as yet unmatched pairs. 37603 records in RAM. INFO 2026-06-08 08:51:22 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:26,293,105 INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 571223 as yet unmatched pairs. 36596 records in RAM. INFO 2026-06-08 08:51:24 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:33,015,765 INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 569884 as yet unmatched pairs. 35246 records in RAM. INFO 2026-06-08 08:51:26 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:44,106,673 INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 568407 as yet unmatched pairs. 33763 records in RAM. INFO 2026-06-08 08:51:28 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:45,920,887 INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 570485 as yet unmatched pairs. 35834 records in RAM. INFO 2026-06-08 08:51:30 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:55,152,549 INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 568762 as yet unmatched pairs. 34098 records in RAM. INFO 2026-06-08 08:51:31 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:55,200,327 INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 572595 as yet unmatched pairs. 37931 records in RAM. INFO 2026-06-08 08:51:33 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:56,054,449 INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 562436 as yet unmatched pairs. 27770 records in RAM. INFO 2026-06-08 08:51:35 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,231 INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 562140 as yet unmatched pairs. 27455 records in RAM. INFO 2026-06-08 08:51:37 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,608 INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 560894 as yet unmatched pairs. 26194 records in RAM. INFO 2026-06-08 08:51:38 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:75,415,745 INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 559607 as yet unmatched pairs. 24901 records in RAM. INFO 2026-06-08 08:51:40 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:76,330,143 INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 558468 as yet unmatched pairs. 23759 records in RAM. INFO 2026-06-08 08:51:42 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:87,519,360 INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 557454 as yet unmatched pairs. 22729 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 3s. Last read position: chr7:92,447,910 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 555921 as yet unmatched pairs. 21187 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:98,193,500 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 554736 as yet unmatched pairs. 19991 records in RAM. INFO 2026-06-08 08:51:49 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,089,718 INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 553276 as yet unmatched pairs. 18513 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,683,443 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 551894 as yet unmatched pairs. 17126 records in RAM. INFO 2026-06-08 08:51:52 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:102,170,454 INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 550690 as yet unmatched pairs. 15911 records in RAM. INFO 2026-06-08 08:51:54 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:102,657,525 INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 550121 as yet unmatched pairs. 15340 records in RAM. INFO 2026-06-08 08:51:56 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:108,177,999 INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 548522 as yet unmatched pairs. 13735 records in RAM. INFO 2026-06-08 08:51:58 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:116,775,042 INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 549115 as yet unmatched pairs. 14293 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:127,904,744 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 547331 as yet unmatched pairs. 12502 records in RAM. INFO 2026-06-08 08:52:02 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr7:129,834,949 INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 544879 as yet unmatched pairs. 10047 records in RAM. INFO 2026-06-08 08:52:05 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr7:135,164,871 INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 544263 as yet unmatched pairs. 9418 records in RAM. INFO 2026-06-08 08:53:06 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 60s. Last read position: chr7:138,919,408 INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 542533 as yet unmatched pairs. 7674 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr7:140,778,022 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 541726 as yet unmatched pairs. 6855 records in RAM. INFO 2026-06-08 08:53:10 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:143,723,232 INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 539875 as yet unmatched pairs. 5004 records in RAM. INFO 2026-06-08 08:53:11 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:149,733,499 INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 539368 as yet unmatched pairs. 4496 records in RAM. INFO 2026-06-08 08:53:13 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:151,017,036 INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 537089 as yet unmatched pairs. 2207 records in RAM. INFO 2026-06-08 08:53:15 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:155,706,925 INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 535760 as yet unmatched pairs. 864 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:7,753,689 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 534224 as yet unmatched pairs. 30209 records in RAM. INFO 2026-06-08 08:53:18 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:17,953,027 INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 533049 as yet unmatched pairs. 29024 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:22,604,830 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 532144 as yet unmatched pairs. 28116 records in RAM. INFO 2026-06-08 08:53:22 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:26,408,323 INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 530576 as yet unmatched pairs. 26530 records in RAM. INFO 2026-06-08 08:53:24 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:28,360,985 INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 530703 as yet unmatched pairs. 26644 records in RAM. INFO 2026-06-08 08:53:26 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:37,696,032 INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 527075 as yet unmatched pairs. 23010 records in RAM. INFO 2026-06-08 08:53:28 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,149 INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 527448 as yet unmatched pairs. 23363 records in RAM. INFO 2026-06-08 08:53:29 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:42,331,226 INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 524623 as yet unmatched pairs. 20532 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:56,074,143 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 522959 as yet unmatched pairs. 18853 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr8:70,141,220 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 522343 as yet unmatched pairs. 18217 records in RAM. INFO 2026-06-08 08:53:36 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr8:86,532,572 INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 521004 as yet unmatched pairs. 16869 records in RAM. INFO 2026-06-08 08:53:37 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:99,136,683 INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 519436 as yet unmatched pairs. 15283 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:104,428,009 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 518761 as yet unmatched pairs. 14605 records in RAM. INFO 2026-06-08 08:53:41 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:123,693,264 INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 516918 as yet unmatched pairs. 12755 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:133,238,811 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 520057 as yet unmatched pairs. 15872 records in RAM. INFO 2026-06-08 08:53:44 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:133,259,220 INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 517283 as yet unmatched pairs. 13092 records in RAM. INFO 2026-06-08 08:53:46 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:141,430,939 INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 512928 as yet unmatched pairs. 8721 records in RAM. INFO 2026-06-08 08:53:47 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,816,538 INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 511117 as yet unmatched pairs. 6904 records in RAM. INFO 2026-06-08 08:53:49 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,627 INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 511454 as yet unmatched pairs. 7241 records in RAM. INFO 2026-06-08 08:53:50 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,116 INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 512062 as yet unmatched pairs. 7843 records in RAM. INFO 2026-06-08 08:53:51 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,872 INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 509134 as yet unmatched pairs. 4915 records in RAM. INFO 2026-06-08 08:53:52 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,139 INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 508097 as yet unmatched pairs. 3876 records in RAM. INFO 2026-06-08 08:53:54 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:144,106,562 INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 506298 as yet unmatched pairs. 2074 records in RAM. INFO 2026-06-08 08:53:56 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:16,819 INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 504241 as yet unmatched pairs. 34343 records in RAM. INFO 2026-06-08 08:53:58 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:5,811,113 INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 503066 as yet unmatched pairs. 33157 records in RAM. INFO 2026-06-08 08:54:00 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,364 INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 503865 as yet unmatched pairs. 33935 records in RAM. INFO 2026-06-08 08:54:01 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:19,379,502 INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 500847 as yet unmatched pairs. 30910 records in RAM. INFO 2026-06-08 08:54:03 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:34,614,749 INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 499761 as yet unmatched pairs. 29816 records in RAM. INFO 2026-06-08 08:54:05 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:35,675,917 INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 502276 as yet unmatched pairs. 32319 records in RAM. INFO 2026-06-08 08:54:06 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:35,906,310 INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 496222 as yet unmatched pairs. 26263 records in RAM. INFO 2026-06-08 08:54:08 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:69,217,651 INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 495504 as yet unmatched pairs. 25502 records in RAM. INFO 2026-06-08 08:54:09 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:72,924,088 INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 498773 as yet unmatched pairs. 28750 records in RAM. INFO 2026-06-08 08:54:11 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:76,710,114 INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 494088 as yet unmatched pairs. 24063 records in RAM. INFO 2026-06-08 08:54:13 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:86,046,502 INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 491639 as yet unmatched pairs. 21597 records in RAM. INFO 2026-06-08 08:54:14 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:93,527,179 INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 490275 as yet unmatched pairs. 20231 records in RAM. INFO 2026-06-08 08:54:16 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:100,320,358 INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 488855 as yet unmatched pairs. 18801 records in RAM. INFO 2026-06-08 08:54:17 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:110,138,452 INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 487741 as yet unmatched pairs. 17674 records in RAM. INFO 2026-06-08 08:54:19 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:114,095,029 INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 487541 as yet unmatched pairs. 17472 records in RAM. INFO 2026-06-08 08:54:21 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:120,491,324 INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 484498 as yet unmatched pairs. 14428 records in RAM. INFO 2026-06-08 08:54:23 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:123,403,401 INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 483348 as yet unmatched pairs. 13275 records in RAM. INFO 2026-06-08 08:54:25 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr9:127,507,076 INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 482113 as yet unmatched pairs. 12027 records in RAM. INFO 2026-06-08 08:54:26 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:128,321,616 INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 480297 as yet unmatched pairs. 10201 records in RAM. INFO 2026-06-08 08:54:28 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:129,140,136 INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 479733 as yet unmatched pairs. 9632 records in RAM. INFO 2026-06-08 08:54:30 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:131,459,163 INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 477568 as yet unmatched pairs. 7466 records in RAM. INFO 2026-06-08 08:54:31 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:133,349,571 INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 477511 as yet unmatched pairs. 7403 records in RAM. INFO 2026-06-08 08:54:33 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:136,431,944 INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 474463 as yet unmatched pairs. 4347 records in RAM. INFO 2026-06-08 08:54:34 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:136,859,905 INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 472788 as yet unmatched pairs. 2664 records in RAM. INFO 2026-06-08 08:54:36 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:137,272,133 INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 471465 as yet unmatched pairs. 1326 records in RAM. INFO 2026-06-08 08:54:38 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:3,108,729 INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 470163 as yet unmatched pairs. 32002 records in RAM. INFO 2026-06-08 08:54:40 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:5,768,263 INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 468719 as yet unmatched pairs. 30555 records in RAM. INFO 2026-06-08 08:54:41 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:13,660,330 INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 466807 as yet unmatched pairs. 28642 records in RAM. INFO 2026-06-08 08:54:43 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:17,043,922 INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 467564 as yet unmatched pairs. 29393 records in RAM. INFO 2026-06-08 08:54:45 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:17,644,205 INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 464009 as yet unmatched pairs. 25832 records in RAM. INFO 2026-06-08 08:54:47 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:28,583,361 INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 462908 as yet unmatched pairs. 24729 records in RAM. INFO 2026-06-08 08:54:49 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:32,929,940 INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 462366 as yet unmatched pairs. 24182 records in RAM. INFO 2026-06-08 08:54:50 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:44,970,249 INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 460763 as yet unmatched pairs. 22577 records in RAM. INFO 2026-06-08 08:54:52 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:46,014,469 INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 460263 as yet unmatched pairs. 22076 records in RAM. INFO 2026-06-08 08:54:53 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:50,811,025 INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 458347 as yet unmatched pairs. 20157 records in RAM. INFO 2026-06-08 08:54:55 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:59,793,070 INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 458050 as yet unmatched pairs. 19854 records in RAM. INFO 2026-06-08 08:54:56 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:68,339,139 INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 455683 as yet unmatched pairs. 17481 records in RAM. INFO 2026-06-08 08:54:58 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,291 INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 457928 as yet unmatched pairs. 19722 records in RAM. INFO 2026-06-08 08:55:00 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:73,792,696 INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 452754 as yet unmatched pairs. 14539 records in RAM. INFO 2026-06-08 08:55:01 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:79,645,286 INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 451421 as yet unmatched pairs. 13190 records in RAM. INFO 2026-06-08 08:55:03 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:87,152,356 INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 450327 as yet unmatched pairs. 12086 records in RAM. INFO 2026-06-08 08:55:04 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:89,438,545 INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 449609 as yet unmatched pairs. 11366 records in RAM. INFO 2026-06-08 08:55:06 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:95,868,292 INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 447936 as yet unmatched pairs. 9678 records in RAM. INFO 2026-06-08 08:55:08 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:99,610,931 INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 446354 as yet unmatched pairs. 8075 records in RAM. INFO 2026-06-08 08:55:10 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:101,006,738 INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 445195 as yet unmatched pairs. 6909 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:102,812,851 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 443578 as yet unmatched pairs. 5291 records in RAM. INFO 2026-06-08 08:55:14 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:113,729,427 INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 442236 as yet unmatched pairs. 3944 records in RAM. INFO 2026-06-08 08:55:15 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:119,920,888 INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 440913 as yet unmatched pairs. 2612 records in RAM. INFO 2026-06-08 08:55:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:127,031,735 INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 439602 as yet unmatched pairs. 1289 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr11:280,213 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 438137 as yet unmatched pairs. 55626 records in RAM. INFO 2026-06-08 08:55:20 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:558,162 INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 436698 as yet unmatched pairs. 54181 records in RAM. INFO 2026-06-08 08:55:22 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:679,725 INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 435203 as yet unmatched pairs. 52684 records in RAM. INFO 2026-06-08 08:55:24 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:850,216 INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 434458 as yet unmatched pairs. 51939 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:2,393,949 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 432937 as yet unmatched pairs. 50408 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:6,401,040 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 430540 as yet unmatched pairs. 48010 records in RAM. INFO 2026-06-08 08:55:29 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:9,150,679 INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 428901 as yet unmatched pairs. 46367 records in RAM. INFO 2026-06-08 08:55:31 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:12,204,338 INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 427416 as yet unmatched pairs. 44877 records in RAM. INFO 2026-06-08 08:55:32 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:18,394,625 INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 432164 as yet unmatched pairs. 49619 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr11:27,368,712 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 425187 as yet unmatched pairs. 42642 records in RAM. INFO 2026-06-08 08:55:36 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:35,685,298 INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 423692 as yet unmatched pairs. 41138 records in RAM. INFO 2026-06-08 08:55:38 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:46,818,480 INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 422226 as yet unmatched pairs. 39670 records in RAM. INFO 2026-06-08 08:55:39 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:57,416,595 INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 420800 as yet unmatched pairs. 38241 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:57,811,471 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 420442 as yet unmatched pairs. 37882 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:61,351,003 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 418464 as yet unmatched pairs. 35901 records in RAM. INFO 2026-06-08 08:55:44 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:62,520,219 INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 417477 as yet unmatched pairs. 34904 records in RAM. INFO 2026-06-08 08:55:46 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,875 INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 416913 as yet unmatched pairs. 34339 records in RAM. INFO 2026-06-08 08:55:48 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,560,304 INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 415434 as yet unmatched pairs. 32859 records in RAM. INFO 2026-06-08 08:55:49 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,888,522 INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 414140 as yet unmatched pairs. 31558 records in RAM. INFO 2026-06-08 08:55:51 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:64,265,339 INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 411543 as yet unmatched pairs. 28960 records in RAM. INFO 2026-06-08 08:55:52 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:64,897,678 INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 410023 as yet unmatched pairs. 27435 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:65,547,470 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 408485 as yet unmatched pairs. 25885 records in RAM. INFO 2026-06-08 08:55:56 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,866,991 INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 406908 as yet unmatched pairs. 24306 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:66,624,520 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 405478 as yet unmatched pairs. 22871 records in RAM. INFO 2026-06-08 08:56:00 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:67,610,446 INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 403526 as yet unmatched pairs. 20915 records in RAM. INFO 2026-06-08 08:56:02 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,305 INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 404947 as yet unmatched pairs. 22332 records in RAM. INFO 2026-06-08 08:56:03 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:71,490,956 INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 400589 as yet unmatched pairs. 17973 records in RAM. INFO 2026-06-08 08:56:05 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:72,822,054 INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 399143 as yet unmatched pairs. 16519 records in RAM. INFO 2026-06-08 08:56:06 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,037 INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 399029 as yet unmatched pairs. 16401 records in RAM. INFO 2026-06-08 08:56:08 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:85,717,488 INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 396495 as yet unmatched pairs. 13863 records in RAM. INFO 2026-06-08 08:56:10 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:95,978,996 INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 395176 as yet unmatched pairs. 12542 records in RAM. INFO 2026-06-08 08:56:11 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:104,000,244 INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 393661 as yet unmatched pairs. 11026 records in RAM. INFO 2026-06-08 08:56:13 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:111,908,760 INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 398286 as yet unmatched pairs. 15645 records in RAM. INFO 2026-06-08 08:56:14 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:112,094,805 INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 391551 as yet unmatched pairs. 8907 records in RAM. INFO 2026-06-08 08:56:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:114,255,930 INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 389601 as yet unmatched pairs. 6951 records in RAM. INFO 2026-06-08 08:56:18 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:117,820,667 INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 398717 as yet unmatched pairs. 16067 records in RAM. INFO 2026-06-08 08:56:20 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr11:118,768,317 INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 386984 as yet unmatched pairs. 4327 records in RAM. INFO 2026-06-08 08:56:22 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:119,420,267 INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 386442 as yet unmatched pairs. 3781 records in RAM. INFO 2026-06-08 08:56:23 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:125,748,669 INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 384100 as yet unmatched pairs. 1436 records in RAM. INFO 2026-06-08 08:56:25 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:14,790 INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 382804 as yet unmatched pairs. 44287 records in RAM. INFO 2026-06-08 08:56:27 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:3,116,565 INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 381915 as yet unmatched pairs. 43391 records in RAM. INFO 2026-06-08 08:56:29 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:6,036,417 INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 381162 as yet unmatched pairs. 42629 records in RAM. INFO 2026-06-08 08:56:30 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,582,884 INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 378757 as yet unmatched pairs. 40224 records in RAM. INFO 2026-06-08 08:56:32 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:6,966,420 INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 378021 as yet unmatched pairs. 39487 records in RAM. INFO 2026-06-08 08:56:33 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:8,941,907 INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 375802 as yet unmatched pairs. 37258 records in RAM. INFO 2026-06-08 08:56:35 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:11,133,578 INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 374644 as yet unmatched pairs. 36092 records in RAM. INFO 2026-06-08 08:56:37 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:16,357,622 INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 375040 as yet unmatched pairs. 36484 records in RAM. INFO 2026-06-08 08:56:38 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:27,635,004 INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 372832 as yet unmatched pairs. 34272 records in RAM. INFO 2026-06-08 08:56:40 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:40,252,910 INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 370873 as yet unmatched pairs. 32302 records in RAM. INFO 2026-06-08 08:56:42 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:47,798,839 INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 370653 as yet unmatched pairs. 32076 records in RAM. INFO 2026-06-08 08:56:44 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr12:49,128,635 INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 368748 as yet unmatched pairs. 30167 records in RAM. INFO 2026-06-08 08:56:46 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,242 INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 367265 as yet unmatched pairs. 28679 records in RAM. INFO 2026-06-08 08:56:47 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:53,034,646 INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 367877 as yet unmatched pairs. 29287 records in RAM. INFO 2026-06-08 08:56:49 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,548 INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 365716 as yet unmatched pairs. 27126 records in RAM. INFO 2026-06-08 08:56:51 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,266 INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 363999 as yet unmatched pairs. 25403 records in RAM. INFO 2026-06-08 08:56:52 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,086,571 INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 362192 as yet unmatched pairs. 23587 records in RAM. INFO 2026-06-08 08:56:54 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:56,286,578 INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 360857 as yet unmatched pairs. 22243 records in RAM. INFO 2026-06-08 08:56:55 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:56,720,677 INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 359546 as yet unmatched pairs. 20928 records in RAM. INFO 2026-06-08 08:56:57 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:57,158,574 INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 358246 as yet unmatched pairs. 19621 records in RAM. INFO 2026-06-08 08:56:59 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:57,236,587 INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 359898 as yet unmatched pairs. 21269 records in RAM. INFO 2026-06-08 08:57:00 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:58,890,730 INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 355610 as yet unmatched pairs. 16975 records in RAM. INFO 2026-06-08 08:57:02 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:69,260,043 INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 354152 as yet unmatched pairs. 15509 records in RAM. INFO 2026-06-08 08:57:04 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:81,445,553 INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 352591 as yet unmatched pairs. 13939 records in RAM. INFO 2026-06-08 08:57:05 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:96,259,829 INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 351652 as yet unmatched pairs. 12997 records in RAM. INFO 2026-06-08 08:57:07 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,820 INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 350209 as yet unmatched pairs. 11552 records in RAM. INFO 2026-06-08 08:57:09 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr12:109,786,809 INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 348950 as yet unmatched pairs. 10293 records in RAM. INFO 2026-06-08 08:57:11 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:112,184,499 INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 347399 as yet unmatched pairs. 8739 records in RAM. INFO 2026-06-08 08:57:13 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:115,991,652 INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 346202 as yet unmatched pairs. 7539 records in RAM. INFO 2026-06-08 08:57:14 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:120,213,952 INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 344947 as yet unmatched pairs. 6277 records in RAM. INFO 2026-06-08 08:57:16 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:121,827,534 INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 343222 as yet unmatched pairs. 4545 records in RAM. INFO 2026-06-08 08:57:17 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:123,937,000 INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 342058 as yet unmatched pairs. 3378 records in RAM. INFO 2026-06-08 08:57:19 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:130,874,721 INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 340663 as yet unmatched pairs. 1969 records in RAM. INFO 2026-06-08 08:57:20 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:132,954,480 INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 338822 as yet unmatched pairs. 118 records in RAM. INFO 2026-06-08 08:57:22 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr13:22,897,711 INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 339749 as yet unmatched pairs. 15241 records in RAM. INFO 2026-06-08 08:57:24 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:28,220,289 INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 336359 as yet unmatched pairs. 11847 records in RAM. INFO 2026-06-08 08:57:25 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:37,636,992 INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 335125 as yet unmatched pairs. 10612 records in RAM. INFO 2026-06-08 08:57:27 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr13:45,337,505 INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 338351 as yet unmatched pairs. 13833 records in RAM. INFO 2026-06-08 08:57:29 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:48,261,138 INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 335266 as yet unmatched pairs. 10736 records in RAM. INFO 2026-06-08 08:57:31 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:75,823,786 INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 331618 as yet unmatched pairs. 7077 records in RAM. INFO 2026-06-08 08:57:32 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr13:97,993,215 INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 330301 as yet unmatched pairs. 5752 records in RAM. INFO 2026-06-08 08:57:34 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr13:106,567,880 INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 328951 as yet unmatched pairs. 4394 records in RAM. INFO 2026-06-08 08:57:36 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr13:110,465,542 INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 327814 as yet unmatched pairs. 3257 records in RAM. INFO 2026-06-08 08:57:38 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr13:112,909,227 INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 326025 as yet unmatched pairs. 1456 records in RAM. INFO 2026-06-08 08:57:40 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:20,801,413 INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 324258 as yet unmatched pairs. 25170 records in RAM. INFO 2026-06-08 08:57:41 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:22,905,411 INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 322951 as yet unmatched pairs. 23860 records in RAM. INFO 2026-06-08 08:57:43 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,761 INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 321403 as yet unmatched pairs. 22310 records in RAM. INFO 2026-06-08 08:57:45 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:30,673,934 INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 319941 as yet unmatched pairs. 20838 records in RAM. INFO 2026-06-08 08:57:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:35,403,693 INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 320042 as yet unmatched pairs. 20933 records in RAM. INFO 2026-06-08 08:57:48 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,560 INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 318142 as yet unmatched pairs. 19012 records in RAM. INFO 2026-06-08 08:57:49 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:55,350,598 INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 316344 as yet unmatched pairs. 17194 records in RAM. INFO 2026-06-08 08:57:51 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:63,941,717 INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 315326 as yet unmatched pairs. 16173 records in RAM. INFO 2026-06-08 08:57:53 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:64,522,046 INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 314029 as yet unmatched pairs. 14876 records in RAM. INFO 2026-06-08 08:57:54 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,252 INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 313449 as yet unmatched pairs. 14289 records in RAM. INFO 2026-06-08 08:57:56 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:73,287,168 INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 311339 as yet unmatched pairs. 12176 records in RAM. INFO 2026-06-08 08:57:58 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:75,101,047 INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 309787 as yet unmatched pairs. 10621 records in RAM. INFO 2026-06-08 08:57:59 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:88,572,734 INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 308713 as yet unmatched pairs. 9539 records in RAM. INFO 2026-06-08 08:58:01 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:94,062,389 INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 307450 as yet unmatched pairs. 8261 records in RAM. INFO 2026-06-08 08:58:02 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:99,878,494 INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 305884 as yet unmatched pairs. 6667 records in RAM. INFO 2026-06-08 08:58:04 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr14:102,922,684 INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 304669 as yet unmatched pairs. 5450 records in RAM. INFO 2026-06-08 08:58:06 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:104,701,382 INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 303525 as yet unmatched pairs. 4300 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:104,943,030 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 301334 as yet unmatched pairs. 2109 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,454,274 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 299608 as yet unmatched pairs. 382 records in RAM. INFO 2026-06-08 08:58:11 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:29,718,574 INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 298626 as yet unmatched pairs. 23214 records in RAM. INFO 2026-06-08 08:58:12 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:34,382,874 INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 297758 as yet unmatched pairs. 22338 records in RAM. INFO 2026-06-08 08:58:14 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:40,853,196 INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 296478 as yet unmatched pairs. 21051 records in RAM. INFO 2026-06-08 08:58:15 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:42,732,328 INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 295029 as yet unmatched pairs. 19599 records in RAM. INFO 2026-06-08 08:58:17 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:44,711,542 INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 295313 as yet unmatched pairs. 19877 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:50,182,895 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 292530 as yet unmatched pairs. 17090 records in RAM. INFO 2026-06-08 08:58:20 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:57,253,334 INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 291598 as yet unmatched pairs. 16152 records in RAM. INFO 2026-06-08 08:58:22 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:62,758,582 INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 289793 as yet unmatched pairs. 14345 records in RAM. INFO 2026-06-08 08:58:23 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:64,675,642 INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 288350 as yet unmatched pairs. 12891 records in RAM. INFO 2026-06-08 08:58:25 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr15:69,452,908 INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 287480 as yet unmatched pairs. 12016 records in RAM. INFO 2026-06-08 08:58:27 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:72,474,704 INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 285546 as yet unmatched pairs. 10076 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:74,628,003 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 284234 as yet unmatched pairs. 8760 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:75,675,616 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 282880 as yet unmatched pairs. 7405 records in RAM. INFO 2026-06-08 08:58:31 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:78,937,417 INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 281490 as yet unmatched pairs. 6013 records in RAM. INFO 2026-06-08 08:58:34 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr15:84,839,916 INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 280176 as yet unmatched pairs. 4698 records in RAM. INFO 2026-06-08 08:58:35 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:89,329,021 INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 279049 as yet unmatched pairs. 3565 records in RAM. INFO 2026-06-08 08:58:37 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:90,638,445 INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 277569 as yet unmatched pairs. 2082 records in RAM. INFO 2026-06-08 08:58:38 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr15:99,645,723 INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 276168 as yet unmatched pairs. 670 records in RAM. INFO 2026-06-08 08:58:40 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:520,224 INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 274654 as yet unmatched pairs. 45104 records in RAM. INFO 2026-06-08 08:58:42 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:1,208,144 INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 272863 as yet unmatched pairs. 43301 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr16:1,827,697 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 271406 as yet unmatched pairs. 41843 records in RAM. INFO 2026-06-08 08:58:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:2,246,858 INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 269707 as yet unmatched pairs. 40136 records in RAM. INFO 2026-06-08 08:58:48 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,161 INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 268872 as yet unmatched pairs. 39297 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:3,069,287 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 267281 as yet unmatched pairs. 37706 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:4,441,475 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 265166 as yet unmatched pairs. 35591 records in RAM. INFO 2026-06-08 08:58:52 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:11,042,302 INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 263773 as yet unmatched pairs. 34185 records in RAM. INFO 2026-06-08 08:58:54 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:14,865,054 INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 262760 as yet unmatched pairs. 33171 records in RAM. INFO 2026-06-08 08:58:55 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,533 INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 262107 as yet unmatched pairs. 32518 records in RAM. INFO 2026-06-08 08:58:57 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:16,322,683 INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 261274 as yet unmatched pairs. 31684 records in RAM. INFO 2026-06-08 08:58:58 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:18,339,613 INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 261039 as yet unmatched pairs. 31449 records in RAM. INFO 2026-06-08 08:58:59 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:18,500,502 INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 260359 as yet unmatched pairs. 30769 records in RAM. INFO 2026-06-08 08:59:01 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:20,471,648 INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 259907 as yet unmatched pairs. 30317 records in RAM. INFO 2026-06-08 08:59:02 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:21,406,375 INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 258786 as yet unmatched pairs. 29193 records in RAM. INFO 2026-06-08 08:59:03 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:21,908,466 INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 257597 as yet unmatched pairs. 28003 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,293 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 257148 as yet unmatched pairs. 27551 records in RAM. INFO 2026-06-08 08:59:06 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:28,390,946 INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 255898 as yet unmatched pairs. 26301 records in RAM. INFO 2026-06-08 08:59:08 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:28,975,290 INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 254899 as yet unmatched pairs. 25301 records in RAM. INFO 2026-06-08 08:59:09 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,805,005 INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 254518 as yet unmatched pairs. 24915 records in RAM. INFO 2026-06-08 08:59:11 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,067,270 INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 254269 as yet unmatched pairs. 24664 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,746 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 251555 as yet unmatched pairs. 21949 records in RAM. INFO 2026-06-08 08:59:14 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:30,737,289 INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 250531 as yet unmatched pairs. 20922 records in RAM. INFO 2026-06-08 08:59:15 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,225 INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 249005 as yet unmatched pairs. 19391 records in RAM. INFO 2026-06-08 08:59:17 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:48,560,981 INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 247598 as yet unmatched pairs. 17981 records in RAM. INFO 2026-06-08 08:59:20 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 3s. Last read position: chr16:54,285,312 INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 246332 as yet unmatched pairs. 16713 records in RAM. INFO 2026-06-08 08:59:22 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:57,650,289 INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 245949 as yet unmatched pairs. 16320 records in RAM. INFO 2026-06-08 08:59:24 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:66,734,302 INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 243466 as yet unmatched pairs. 13825 records in RAM. INFO 2026-06-08 08:59:26 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:67,168,915 INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 242561 as yet unmatched pairs. 12911 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:67,909,477 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 240218 as yet unmatched pairs. 10564 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:69,757,633 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 238795 as yet unmatched pairs. 9132 records in RAM. INFO 2026-06-08 08:59:30 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:70,664,175 INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 238028 as yet unmatched pairs. 8357 records in RAM. INFO 2026-06-08 08:59:32 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:74,474,618 INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 236697 as yet unmatched pairs. 7018 records in RAM. INFO 2026-06-08 08:59:34 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:81,652,262 INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 235260 as yet unmatched pairs. 5576 records in RAM. INFO 2026-06-08 08:59:35 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:87,402,953 INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 233633 as yet unmatched pairs. 3940 records in RAM. INFO 2026-06-08 08:59:37 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:89,100,726 INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 232017 as yet unmatched pairs. 2318 records in RAM. INFO 2026-06-08 08:59:38 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:89,738,893 INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 230276 as yet unmatched pairs. 574 records in RAM. INFO 2026-06-08 08:59:41 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,933 INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 234511 as yet unmatched pairs. 72367 records in RAM. INFO 2026-06-08 08:59:43 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:1,681,870 INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 227843 as yet unmatched pairs. 65699 records in RAM. INFO 2026-06-08 08:59:44 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:2,394,045 INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 225842 as yet unmatched pairs. 63698 records in RAM. INFO 2026-06-08 08:59:46 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:4,499,095 INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 224604 as yet unmatched pairs. 62460 records in RAM. INFO 2026-06-08 08:59:48 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr17:4,946,742 INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 224238 as yet unmatched pairs. 62094 records in RAM. INFO 2026-06-08 08:59:49 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,922 INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 222483 as yet unmatched pairs. 60338 records in RAM. INFO 2026-06-08 08:59:51 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,417,440 INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 220076 as yet unmatched pairs. 57927 records in RAM. INFO 2026-06-08 08:59:53 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr17:7,574,667 INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 218987 as yet unmatched pairs. 56838 records in RAM. INFO 2026-06-08 08:59:55 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:7,949,385 INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 217523 as yet unmatched pairs. 55371 records in RAM. INFO 2026-06-08 08:59:57 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:8,487,501 INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 216037 as yet unmatched pairs. 53881 records in RAM. INFO 2026-06-08 08:59:59 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,015 INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 217806 as yet unmatched pairs. 55650 records in RAM. INFO 2026-06-08 09:00:00 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:17,882,771 INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 213482 as yet unmatched pairs. 51325 records in RAM. INFO 2026-06-08 09:00:02 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:18,877,728 INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 212129 as yet unmatched pairs. 49969 records in RAM. INFO 2026-06-08 09:00:03 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:19,652,555 INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 212142 as yet unmatched pairs. 49977 records in RAM. INFO 2026-06-08 09:00:05 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:28,552,365 INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 208997 as yet unmatched pairs. 46832 records in RAM. INFO 2026-06-08 09:02:12 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 127s. Last read position: chr17:29,044,948 INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 207576 as yet unmatched pairs. 45411 records in RAM. INFO 2026-06-08 09:02:14 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr17:31,260,375 INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 206404 as yet unmatched pairs. 44239 records in RAM. INFO 2026-06-08 09:02:16 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:35,671,779 INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 205498 as yet unmatched pairs. 43328 records in RAM. INFO 2026-06-08 09:02:17 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:37,512,778 INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 203940 as yet unmatched pairs. 41764 records in RAM. INFO 2026-06-08 09:02:19 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:38,713,096 INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 203319 as yet unmatched pairs. 41142 records in RAM. INFO 2026-06-08 09:02:21 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:39,410,466 INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 201901 as yet unmatched pairs. 39715 records in RAM. INFO 2026-06-08 09:02:22 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,443 INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 202562 as yet unmatched pairs. 40376 records in RAM. INFO 2026-06-08 09:02:24 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr17:40,164,137 INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 199109 as yet unmatched pairs. 36923 records in RAM. INFO 2026-06-08 09:02:26 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:41,867,829 INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 198611 as yet unmatched pairs. 36422 records in RAM. INFO 2026-06-08 09:02:28 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:42,218,750 INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 196255 as yet unmatched pairs. 34064 records in RAM. INFO 2026-06-08 09:02:30 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 2s. Last read position: chr17:42,795,003 INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 194602 as yet unmatched pairs. 32411 records in RAM. INFO 2026-06-08 09:02:32 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,807 INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 193274 as yet unmatched pairs. 31080 records in RAM. INFO 2026-06-08 09:02:33 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:45,237,621 INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 191585 as yet unmatched pairs. 29389 records in RAM. INFO 2026-06-08 09:02:35 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:47,018,963 INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 190619 as yet unmatched pairs. 28420 records in RAM. INFO 2026-06-08 09:02:37 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr17:48,058,468 INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 189913 as yet unmatched pairs. 27712 records in RAM. INFO 2026-06-08 09:02:38 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,106,849 INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 188718 as yet unmatched pairs. 26507 records in RAM. INFO 2026-06-08 09:02:40 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,667,553 INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 188178 as yet unmatched pairs. 25966 records in RAM. INFO 2026-06-08 09:02:41 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:55,159,805 INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 184910 as yet unmatched pairs. 22695 records in RAM. INFO 2026-06-08 09:02:43 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:59,648,255 INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 184523 as yet unmatched pairs. 22307 records in RAM. INFO 2026-06-08 09:02:45 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:60,255,202 INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 182392 as yet unmatched pairs. 20168 records in RAM. INFO 2026-06-08 09:02:46 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:63,941,088 INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 180856 as yet unmatched pairs. 18631 records in RAM. INFO 2026-06-08 09:02:47 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:67,178,783 INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 179834 as yet unmatched pairs. 17607 records in RAM. INFO 2026-06-08 09:02:49 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:69,106,041 INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 178557 as yet unmatched pairs. 16330 records in RAM. INFO 2026-06-08 09:02:51 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:74,775,656 INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 177026 as yet unmatched pairs. 14795 records in RAM. INFO 2026-06-08 09:02:53 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 2s. Last read position: chr17:75,591,694 INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 175757 as yet unmatched pairs. 13525 records in RAM. INFO 2026-06-08 09:02:56 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr17:75,818,694 INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 174218 as yet unmatched pairs. 11976 records in RAM. INFO 2026-06-08 09:02:58 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr17:76,688,166 INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 172734 as yet unmatched pairs. 10492 records in RAM. INFO 2026-06-08 09:03:00 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:78,807,140 INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 171164 as yet unmatched pairs. 8922 records in RAM. INFO 2026-06-08 09:03:01 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:80,288,113 INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 171969 as yet unmatched pairs. 9722 records in RAM. INFO 2026-06-08 09:03:02 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:80,372,717 INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 169407 as yet unmatched pairs. 7158 records in RAM. INFO 2026-06-08 09:03:04 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,128 INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 167545 as yet unmatched pairs. 5292 records in RAM. INFO 2026-06-08 09:03:06 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,783 INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 165625 as yet unmatched pairs. 3371 records in RAM. INFO 2026-06-08 09:03:07 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:82,238,745 INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 164394 as yet unmatched pairs. 2137 records in RAM. INFO 2026-06-08 09:03:09 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr18:2,907,031 INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 161914 as yet unmatched pairs. 10374 records in RAM. INFO 2026-06-08 09:03:10 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr18:9,102,776 INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 160700 as yet unmatched pairs. 9157 records in RAM. INFO 2026-06-08 09:03:12 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr18:22,992,884 INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 159186 as yet unmatched pairs. 7639 records in RAM. INFO 2026-06-08 09:03:13 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr18:35,263,522 INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 157930 as yet unmatched pairs. 6382 records in RAM. INFO 2026-06-08 09:03:15 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,803 INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 158527 as yet unmatched pairs. 6977 records in RAM. INFO 2026-06-08 09:03:16 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr18:58,536,587 INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 155653 as yet unmatched pairs. 4103 records in RAM. INFO 2026-06-08 09:03:18 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,424 INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 157027 as yet unmatched pairs. 5469 records in RAM. INFO 2026-06-08 09:03:20 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr18:76,441,814 INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 152111 as yet unmatched pairs. 551 records in RAM. INFO 2026-06-08 09:03:23 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:804,293 INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 150661 as yet unmatched pairs. 63247 records in RAM. INFO 2026-06-08 09:03:25 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:1,221,805 INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 148828 as yet unmatched pairs. 61414 records in RAM. INFO 2026-06-08 09:03:27 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:1,817,227 INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 147215 as yet unmatched pairs. 59798 records in RAM. INFO 2026-06-08 09:03:28 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:2,757,334 INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 145551 as yet unmatched pairs. 58129 records in RAM. INFO 2026-06-08 09:03:30 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:4,097,302 INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 144352 as yet unmatched pairs. 56928 records in RAM. INFO 2026-06-08 09:03:31 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:5,206,826 INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 142240 as yet unmatched pairs. 54815 records in RAM. INFO 2026-06-08 09:03:33 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:6,213,736 INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 140402 as yet unmatched pairs. 52976 records in RAM. INFO 2026-06-08 09:03:35 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:6,720,518 INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 138826 as yet unmatched pairs. 51400 records in RAM. INFO 2026-06-08 09:03:36 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:7,559,042 INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 137378 as yet unmatched pairs. 49952 records in RAM. INFO 2026-06-08 09:03:38 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:8,371,140 INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 139248 as yet unmatched pairs. 51822 records in RAM. INFO 2026-06-08 09:03:39 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:10,140,266 INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 134055 as yet unmatched pairs. 46629 records in RAM. INFO 2026-06-08 09:03:41 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,236 INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 133077 as yet unmatched pairs. 45646 records in RAM. INFO 2026-06-08 09:03:42 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:11,442,505 INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 131504 as yet unmatched pairs. 44073 records in RAM. INFO 2026-06-08 09:03:44 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:12,800,288 INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 129857 as yet unmatched pairs. 42426 records in RAM. INFO 2026-06-08 09:03:46 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:14,151,131 INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 127872 as yet unmatched pairs. 40439 records in RAM. INFO 2026-06-08 09:03:47 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:15,174,112 INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 127080 as yet unmatched pairs. 39646 records in RAM. INFO 2026-06-08 09:03:50 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr19:15,372,194 INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 124620 as yet unmatched pairs. 37185 records in RAM. INFO 2026-06-08 09:03:51 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,433 INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 122988 as yet unmatched pairs. 35552 records in RAM. INFO 2026-06-08 09:03:53 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,339 INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 122345 as yet unmatched pairs. 34906 records in RAM. INFO 2026-06-08 09:03:55 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:18,539,582 INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 119984 as yet unmatched pairs. 32545 records in RAM. INFO 2026-06-08 09:03:56 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:19,634,024 INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 118008 as yet unmatched pairs. 30569 records in RAM. INFO 2026-06-08 09:03:58 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:34,365,296 INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 118177 as yet unmatched pairs. 30735 records in RAM. INFO 2026-06-08 09:03:59 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:35,278,960 INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 115150 as yet unmatched pairs. 27704 records in RAM. INFO 2026-06-08 09:04:01 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:37,289,220 INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 113237 as yet unmatched pairs. 25791 records in RAM. INFO 2026-06-08 09:04:02 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:38,815,931 INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 113404 as yet unmatched pairs. 25958 records in RAM. INFO 2026-06-08 09:04:04 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,296 INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 111909 as yet unmatched pairs. 24461 records in RAM. INFO 2026-06-08 09:04:05 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:40,236,286 INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 109422 as yet unmatched pairs. 21974 records in RAM. INFO 2026-06-08 09:04:07 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:41,344,846 INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 107564 as yet unmatched pairs. 20115 records in RAM. INFO 2026-06-08 09:04:09 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,561 INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 106453 as yet unmatched pairs. 19002 records in RAM. INFO 2026-06-08 09:04:10 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:44,213,115 INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 104446 as yet unmatched pairs. 16975 records in RAM. INFO 2026-06-08 09:04:11 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:45,408,397 INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 102750 as yet unmatched pairs. 15270 records in RAM. INFO 2026-06-08 09:04:13 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:46,736,822 INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 100915 as yet unmatched pairs. 13433 records in RAM. INFO 2026-06-08 09:04:15 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:47,754,551 INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 100731 as yet unmatched pairs. 13246 records in RAM. INFO 2026-06-08 09:04:16 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:48,913,128 INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 98167 as yet unmatched pairs. 10678 records in RAM. INFO 2026-06-08 09:04:19 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr19:49,499,572 INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 96264 as yet unmatched pairs. 8775 records in RAM. INFO 2026-06-08 09:04:20 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:49,858,443 INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 95012 as yet unmatched pairs. 7517 records in RAM. INFO 2026-06-08 09:04:22 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:52,212,755 INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 94093 as yet unmatched pairs. 6598 records in RAM. INFO 2026-06-08 09:04:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:54,191,777 INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 92049 as yet unmatched pairs. 4551 records in RAM. INFO 2026-06-08 09:04:25 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:55,455,260 INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 90777 as yet unmatched pairs. 3279 records in RAM. INFO 2026-06-08 09:04:26 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:57,808,739 INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 88857 as yet unmatched pairs. 1357 records in RAM. INFO 2026-06-08 09:04:28 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr20:419,387 INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 87554 as yet unmatched pairs. 20014 records in RAM. INFO 2026-06-08 09:04:30 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:3,694,343 INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 85870 as yet unmatched pairs. 18330 records in RAM. INFO 2026-06-08 09:04:31 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:10,658,678 INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 84732 as yet unmatched pairs. 17190 records in RAM. INFO 2026-06-08 09:04:33 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:21,755,301 INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 83034 as yet unmatched pairs. 15491 records in RAM. INFO 2026-06-08 09:04:34 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:32,434,690 INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 81808 as yet unmatched pairs. 14261 records in RAM. INFO 2026-06-08 09:04:36 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:35,277,865 INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 80127 as yet unmatched pairs. 12579 records in RAM. INFO 2026-06-08 09:04:37 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,762 INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 78651 as yet unmatched pairs. 11102 records in RAM. INFO 2026-06-08 09:04:39 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:41,354,698 INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 77617 as yet unmatched pairs. 10068 records in RAM. INFO 2026-06-08 09:04:41 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:45,834,405 INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 75796 as yet unmatched pairs. 8245 records in RAM. INFO 2026-06-08 09:04:43 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:49,238,986 INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 74363 as yet unmatched pairs. 6810 records in RAM. INFO 2026-06-08 09:04:45 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:57,565,372 INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 73160 as yet unmatched pairs. 5606 records in RAM. INFO 2026-06-08 09:04:47 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr20:62,318,513 INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 71990 as yet unmatched pairs. 4431 records in RAM. INFO 2026-06-08 09:04:48 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:62,905,536 INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 69781 as yet unmatched pairs. 2219 records in RAM. INFO 2026-06-08 09:04:50 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:64,016,753 INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 68109 as yet unmatched pairs. 547 records in RAM. INFO 2026-06-08 09:04:52 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,923 INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 66841 as yet unmatched pairs. 11531 records in RAM. INFO 2026-06-08 09:04:53 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783 INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 66252 as yet unmatched pairs. 10939 records in RAM. INFO 2026-06-08 09:04:54 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,260 INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 65613 as yet unmatched pairs. 10296 records in RAM. INFO 2026-06-08 09:04:55 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr21:26,000,054 INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 64617 as yet unmatched pairs. 9299 records in RAM. INFO 2026-06-08 09:04:57 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr21:33,521,032 INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 62595 as yet unmatched pairs. 7273 records in RAM. INFO 2026-06-08 09:04:59 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr21:38,299,661 INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 62081 as yet unmatched pairs. 6759 records in RAM. INFO 2026-06-08 09:05:00 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr21:43,981,124 INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 60261 as yet unmatched pairs. 4937 records in RAM. INFO 2026-06-08 09:05:02 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr21:45,468,526 INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 59449 as yet unmatched pairs. 4124 records in RAM. INFO 2026-06-08 09:05:04 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr21:46,112,495 INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 56543 as yet unmatched pairs. 1218 records in RAM. INFO 2026-06-08 09:05:05 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:17,871,854 INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 54882 as yet unmatched pairs. 25886 records in RAM. INFO 2026-06-08 09:05:07 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:20,116,282 INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 53412 as yet unmatched pairs. 24416 records in RAM. INFO 2026-06-08 09:05:09 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:22,647,206 INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 52166 as yet unmatched pairs. 23170 records in RAM. INFO 2026-06-08 09:05:10 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:24,062,995 INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 50412 as yet unmatched pairs. 21416 records in RAM. INFO 2026-06-08 09:05:12 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:24,645,635 INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 48869 as yet unmatched pairs. 19873 records in RAM. INFO 2026-06-08 09:05:13 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:29,282,522 INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 49202 as yet unmatched pairs. 20205 records in RAM. INFO 2026-06-08 09:05:15 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:30,415,959 INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 46028 as yet unmatched pairs. 17031 records in RAM. INFO 2026-06-08 09:05:16 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:31,620,602 INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 44756 as yet unmatched pairs. 15759 records in RAM. INFO 2026-06-08 09:05:18 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr22:36,265,476 INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 43894 as yet unmatched pairs. 14896 records in RAM. INFO 2026-06-08 09:05:19 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:37,206,287 INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 41653 as yet unmatched pairs. 12655 records in RAM. INFO 2026-06-08 09:05:21 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:38,486,113 INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 41007 as yet unmatched pairs. 12005 records in RAM. INFO 2026-06-08 09:05:23 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:39,529,906 INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 38866 as yet unmatched pairs. 9864 records in RAM. INFO 2026-06-08 09:05:24 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:41,508,037 INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 37567 as yet unmatched pairs. 8563 records in RAM. INFO 2026-06-08 09:05:25 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr22:42,636,758 INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 36096 as yet unmatched pairs. 7092 records in RAM. INFO 2026-06-08 09:05:27 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr22:46,762,820 INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 34941 as yet unmatched pairs. 5937 records in RAM. INFO 2026-06-08 09:05:29 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:50,285,994 INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 33042 as yet unmatched pairs. 4038 records in RAM. INFO 2026-06-08 09:05:31 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:50,529,517 INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 31198 as yet unmatched pairs. 2189 records in RAM. INFO 2026-06-08 09:05:32 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:1,391,921 INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 29675 as yet unmatched pairs. 20781 records in RAM. INFO 2026-06-08 09:05:34 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:12,820,757 INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 27235 as yet unmatched pairs. 18341 records in RAM. INFO 2026-06-08 09:05:35 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:19,013,998 INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 25868 as yet unmatched pairs. 16952 records in RAM. INFO 2026-06-08 09:05:37 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:41,165,967 INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 24935 as yet unmatched pairs. 16019 records in RAM. INFO 2026-06-08 09:05:38 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:47,585,646 INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 23686 as yet unmatched pairs. 14769 records in RAM. INFO 2026-06-08 09:05:40 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:49,076,471 INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 22154 as yet unmatched pairs. 13237 records in RAM. INFO 2026-06-08 09:05:41 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:53,592,502 INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 20855 as yet unmatched pairs. 11937 records in RAM. INFO 2026-06-08 09:05:43 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:67,711,557 INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 19437 as yet unmatched pairs. 10518 records in RAM. INFO 2026-06-08 09:05:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:72,262,748 INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 17869 as yet unmatched pairs. 8950 records in RAM. INFO 2026-06-08 09:05:46 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:78,125,795 INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 17997 as yet unmatched pairs. 9078 records in RAM. INFO 2026-06-08 09:05:47 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:106,928,716 INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 16819 as yet unmatched pairs. 7900 records in RAM. INFO 2026-06-08 09:05:49 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:120,627,056 INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 14401 as yet unmatched pairs. 5482 records in RAM. INFO 2026-06-08 09:05:50 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:139,782,688 INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 13269 as yet unmatched pairs. 4350 records in RAM. INFO 2026-06-08 09:05:52 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:153,787,093 INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 12064 as yet unmatched pairs. 3141 records in RAM. INFO 2026-06-08 09:05:54 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,534 INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 11125 as yet unmatched pairs. 2202 records in RAM. INFO 2026-06-08 09:05:56 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:155,383,113 INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 8971 as yet unmatched pairs. 48 records in RAM. INFO 2026-06-08 09:05:57 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrM:11,269 INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 8151 as yet unmatched pairs. 208 records in RAM. INFO 2026-06-08 09:05:59 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,932 INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 5547 as yet unmatched pairs. 120 records in RAM. INFO 2026-06-08 09:06:00 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: KI270711.1:29,392 INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 5432 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 09:06:01 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,661 INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 623 as yet unmatched pairs. 547 records in RAM. INFO 2026-06-08 09:06:02 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,781 INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 76 as yet unmatched pairs. 0 records in RAM. INFO 2026-06-08 09:06:03 MarkDuplicates Read 640112539 records. 0 pairs never matched. INFO 2026-06-08 09:06:50 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137768; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:06:50 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:06:55 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:06:56 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1173 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,492 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1369 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,852 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1658 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,716 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1835 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,126 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 3005 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,632 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,963 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,994 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1352 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,797 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1268 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,054 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1646 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,305 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,130 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder Large duplicate set. size = 1136 INFO 2026-06-08 09:07:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,055 INFO 2026-06-08 09:07:19 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-08 09:07:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,675 INFO 2026-06-08 09:07:27 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:07:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,393 INFO 2026-06-08 09:08:23 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:08:23 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:09:23 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:09:25 MarkDuplicates After generateDuplicateIndexes freeMemory: 203978448; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:09:25 MarkDuplicates Marking 318742481 records as duplicates. INFO 2026-06-08 09:09:25 MarkDuplicates Found 16500119 optical duplicate clusters. INFO 2026-06-08 09:09:25 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:09:44 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:21,831,760 INFO 2026-06-08 09:10:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:37s. Time for last 10,000,000: 18s. Last read position: chr1:43,981,783 INFO 2026-06-08 09:10:21 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:55s. Time for last 10,000,000: 18s. Last read position: chr1:109,629,184 INFO 2026-06-08 09:10:39 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:13s. Time for last 10,000,000: 18s. Last read position: chr1:154,173,180 INFO 2026-06-08 09:10:57 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 18s. Last read position: chr1:186,332,303 INFO 2026-06-08 09:11:15 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:50s. Time for last 10,000,000: 18s. Last read position: chr2:3,498,942 INFO 2026-06-08 09:11:33 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:08s. Time for last 10,000,000: 18s. Last read position: chr2:44,313,864 INFO 2026-06-08 09:11:52 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 18s. Last read position: chr2:101,888,823 INFO 2026-06-08 09:12:10 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:44s. Time for last 10,000,000: 18s. Last read position: chr2:172,487,414 INFO 2026-06-08 09:12:28 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 18s. Last read position: chr2:233,672,510 INFO 2026-06-08 09:12:47 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:21s. Time for last 10,000,000: 18s. Last read position: chr3:52,510,011 INFO 2026-06-08 09:13:05 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 18s. Last read position: chr3:139,374,553 INFO 2026-06-08 09:13:24 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:58s. Time for last 10,000,000: 18s. Last read position: chr4:6,641,092 INFO 2026-06-08 09:13:42 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 18s. Last read position: chr4:107,908,560 INFO 2026-06-08 09:14:01 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 18s. Last read position: chr5:32,015,865 INFO 2026-06-08 09:14:19 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 18s. Last read position: chr5:132,734,352 INFO 2026-06-08 09:14:37 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:12s. Time for last 10,000,000: 18s. Last read position: chr5:151,026,882 INFO 2026-06-08 09:14:56 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 18s. Last read position: chr6:11,191,157 INFO 2026-06-08 09:15:14 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:48s. Time for last 10,000,000: 17s. Last read position: chr6:31,829,204 INFO 2026-06-08 09:15:32 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:06s. Time for last 10,000,000: 18s. Last read position: chr6:37,474,623 INFO 2026-06-08 09:15:50 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 18s. Last read position: chr6:111,373,576 INFO 2026-06-08 09:16:08 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 18s. Last read position: chr6:160,258,593 INFO 2026-06-08 09:16:27 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 18s. Last read position: chr7:55,152,549 INFO 2026-06-08 09:16:46 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 19s. Last read position: chr7:100,089,718 INFO 2026-06-08 09:17:05 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 19s. Last read position: chr7:140,778,022 INFO 2026-06-08 09:17:24 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:58s. Time for last 10,000,000: 18s. Last read position: chr8:37,696,032 INFO 2026-06-08 09:17:43 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 19s. Last read position: chr8:133,259,220 INFO 2026-06-08 09:18:02 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 18s. Last read position: chr9:14,307,364 INFO 2026-06-08 09:18:21 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 19s. Last read position: chr9:100,320,358 INFO 2026-06-08 09:18:40 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 18s. Last read position: chr9:136,431,944 INFO 2026-06-08 09:18:59 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 19s. Last read position: chr10:44,970,249 INFO 2026-06-08 09:19:18 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:52s. Time for last 10,000,000: 18s. Last read position: chr10:95,868,292 INFO 2026-06-08 09:19:37 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:11s. Time for last 10,000,000: 18s. Last read position: chr11:850,216 INFO 2026-06-08 09:19:56 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 19s. Last read position: chr11:57,811,471 INFO 2026-06-08 09:20:15 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 18s. Last read position: chr11:66,624,520 INFO 2026-06-08 09:20:33 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 18s. Last read position: chr11:112,094,805 INFO 2026-06-08 09:20:52 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 18s. Last read position: chr12:6,966,420 INFO 2026-06-08 09:21:11 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 18s. Last read position: chr12:53,443,548 INFO 2026-06-08 09:21:30 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 19s. Last read position: chr12:96,259,829 INFO 2026-06-08 09:21:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 18s. Last read position: chr13:22,897,711 INFO 2026-06-08 09:22:08 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 18s. Last read position: chr14:20,801,413 INFO 2026-06-08 09:22:27 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:13:01s. Time for last 10,000,000: 18s. Last read position: chr14:73,287,168 INFO 2026-06-08 09:22:45 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 18s. Last read position: chr15:34,382,874 INFO 2026-06-08 09:23:04 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:39s. Time for last 10,000,000: 18s. Last read position: chr15:74,628,003 INFO 2026-06-08 09:23:23 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:57s. Time for last 10,000,000: 18s. Last read position: chr16:2,246,858 INFO 2026-06-08 09:23:42 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 18s. Last read position: chr16:20,471,648 INFO 2026-06-08 09:24:00 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 18s. Last read position: chr16:31,184,225 INFO 2026-06-08 09:24:19 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 18s. Last read position: chr16:81,652,262 INFO 2026-06-08 09:24:38 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:12s. Time for last 10,000,000: 18s. Last read position: chr17:7,417,440