Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:27:12.428 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:27:12 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-5b8b4a-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:27:12 GMT 2026] Executing as ?@nf-df814ded75062bc1cc55f4859eb5cbfc-5bcdc-lnp8b on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:27:12 MarkDuplicates Start of doWork freeMemory: 105802408; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:27:12 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:27:12 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:27:18 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,053,948
INFO 2026-06-08 09:27:18 MarkDuplicates Tracking 2538 as yet unmatched pairs. 969 records in RAM.
INFO 2026-06-08 09:27:21 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 3s. Last read position: chr1:1,722,717
INFO 2026-06-08 09:27:21 MarkDuplicates Tracking 3460 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 09:27:24 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:6,206,164
INFO 2026-06-08 09:27:24 MarkDuplicates Tracking 5082 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 09:27:26 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:8,358,792
INFO 2026-06-08 09:27:26 MarkDuplicates Tracking 7928 as yet unmatched pairs. 1276 records in RAM.
INFO 2026-06-08 09:27:29 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:9,037,641
INFO 2026-06-08 09:27:29 MarkDuplicates Tracking 8898 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 09:27:31 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:11,240,517
INFO 2026-06-08 09:27:31 MarkDuplicates Tracking 9829 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 09:27:33 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:15,638,322
INFO 2026-06-08 09:27:33 MarkDuplicates Tracking 11300 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 09:27:35 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:17,079,200
INFO 2026-06-08 09:27:35 MarkDuplicates Tracking 12644 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 09:27:38 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:19,655,026
INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 14758 as yet unmatched pairs. 658 records in RAM.
INFO 2026-06-08 09:27:40 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,831,760
INFO 2026-06-08 09:27:40 MarkDuplicates Tracking 16293 as yet unmatched pairs. 727 records in RAM.
INFO 2026-06-08 09:27:42 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:21,885,378
INFO 2026-06-08 09:27:42 MarkDuplicates Tracking 17741 as yet unmatched pairs. 696 records in RAM.
INFO 2026-06-08 09:27:44 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:23,692,608
INFO 2026-06-08 09:27:44 MarkDuplicates Tracking 20028 as yet unmatched pairs. 1443 records in RAM.
INFO 2026-06-08 09:27:47 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 3s. Last read position: chr1:26,180,457
INFO 2026-06-08 09:27:47 MarkDuplicates Tracking 19996 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 09:27:49 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:27,551,725
INFO 2026-06-08 09:27:49 MarkDuplicates Tracking 21836 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 09:27:51 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:31,577,218
INFO 2026-06-08 09:27:51 MarkDuplicates Tracking 25368 as yet unmatched pairs. 2563 records in RAM.
INFO 2026-06-08 09:27:54 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:32,964,568
INFO 2026-06-08 09:27:54 MarkDuplicates Tracking 24449 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 09:27:56 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:36,286,931
INFO 2026-06-08 09:27:56 MarkDuplicates Tracking 25895 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 09:27:59 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 3s. Last read position: chr1:39,447,437
INFO 2026-06-08 09:27:59 MarkDuplicates Tracking 27341 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 09:28:01 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:42,696,903
INFO 2026-06-08 09:28:01 MarkDuplicates Tracking 28807 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 09:28:03 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:43,981,783
INFO 2026-06-08 09:28:03 MarkDuplicates Tracking 30017 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 09:28:05 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:46,220,153
INFO 2026-06-08 09:28:05 MarkDuplicates Tracking 31385 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 09:28:07 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:46,405,031
INFO 2026-06-08 09:28:07 MarkDuplicates Tracking 33150 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 09:28:09 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:51,363,988
INFO 2026-06-08 09:28:09 MarkDuplicates Tracking 34775 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 09:28:11 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:54,045,706
INFO 2026-06-08 09:28:11 MarkDuplicates Tracking 37126 as yet unmatched pairs. 1300 records in RAM.
INFO 2026-06-08 09:28:13 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:61,787,814
INFO 2026-06-08 09:28:13 MarkDuplicates Tracking 37649 as yet unmatched pairs. 445 records in RAM.
INFO 2026-06-08 09:28:17 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 3s. Last read position: chr1:67,424,934
INFO 2026-06-08 09:28:17 MarkDuplicates Tracking 38850 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 09:28:19 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:81,943,663
INFO 2026-06-08 09:28:19 MarkDuplicates Tracking 40331 as yet unmatched pairs. 582 records in RAM.
INFO 2026-06-08 09:28:21 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:90,020,883
INFO 2026-06-08 09:28:21 MarkDuplicates Tracking 41195 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 09:28:23 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:100,565,501
INFO 2026-06-08 09:28:23 MarkDuplicates Tracking 42288 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 09:28:25 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:109,629,184
INFO 2026-06-08 09:28:25 MarkDuplicates Tracking 43879 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 09:28:27 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:112,525,379
INFO 2026-06-08 09:28:27 MarkDuplicates Tracking 45052 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 09:28:29 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:115,976,623
INFO 2026-06-08 09:28:29 MarkDuplicates Tracking 46261 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 09:28:31 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:119,940,595
INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 48014 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 09:28:33 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:144,906,031
INFO 2026-06-08 09:28:33 MarkDuplicates Tracking 48597 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 09:28:34 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:146,135,435
INFO 2026-06-08 09:28:34 MarkDuplicates Tracking 49567 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 09:28:37 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:148,577,179
INFO 2026-06-08 09:28:37 MarkDuplicates Tracking 49989 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 09:28:39 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:149,925,932
INFO 2026-06-08 09:28:39 MarkDuplicates Tracking 50752 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 09:28:41 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:150,966,504
INFO 2026-06-08 09:28:41 MarkDuplicates Tracking 52463 as yet unmatched pairs. 470 records in RAM.
INFO 2026-06-08 09:28:43 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:153,535,256
INFO 2026-06-08 09:28:43 MarkDuplicates Tracking 53369 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:28:45 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:154,173,180
INFO 2026-06-08 09:28:45 MarkDuplicates Tracking 56516 as yet unmatched pairs. 1729 records in RAM.
INFO 2026-06-08 09:28:47 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:155,052,698
INFO 2026-06-08 09:28:47 MarkDuplicates Tracking 56413 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 09:28:49 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:155,679,485
INFO 2026-06-08 09:28:49 MarkDuplicates Tracking 58107 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 09:28:51 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:156,245,543
INFO 2026-06-08 09:28:51 MarkDuplicates Tracking 59370 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 09:28:54 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:159,781,027
INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 61158 as yet unmatched pairs. 391 records in RAM.
INFO 2026-06-08 09:28:56 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:161,362,470
INFO 2026-06-08 09:28:56 MarkDuplicates Tracking 62311 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 09:28:58 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:167,553,527
INFO 2026-06-08 09:28:58 MarkDuplicates Tracking 63871 as yet unmatched pairs. 512 records in RAM.
INFO 2026-06-08 09:29:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:169,131,291
INFO 2026-06-08 09:29:00 MarkDuplicates Tracking 72321 as yet unmatched pairs. 7435 records in RAM.
INFO 2026-06-08 09:29:03 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:173,486,314
INFO 2026-06-08 09:29:03 MarkDuplicates Tracking 66702 as yet unmatched pairs. 481 records in RAM.
INFO 2026-06-08 09:29:05 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:182,385,403
INFO 2026-06-08 09:29:05 MarkDuplicates Tracking 67905 as yet unmatched pairs. 325 records in RAM.
INFO 2026-06-08 09:29:07 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:186,332,303
INFO 2026-06-08 09:29:07 MarkDuplicates Tracking 69187 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 09:29:09 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:201,718,574
INFO 2026-06-08 09:29:09 MarkDuplicates Tracking 70091 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 09:29:11 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:204,155,089
INFO 2026-06-08 09:29:11 MarkDuplicates Tracking 71559 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 09:29:13 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:206,056,862
INFO 2026-06-08 09:29:13 MarkDuplicates Tracking 73066 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 09:29:15 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:211,372,625
INFO 2026-06-08 09:29:15 MarkDuplicates Tracking 74183 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 09:29:17 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:223,744,152
INFO 2026-06-08 09:29:17 MarkDuplicates Tracking 75605 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 09:29:19 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:227,733,539
INFO 2026-06-08 09:29:19 MarkDuplicates Tracking 77005 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 09:29:22 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:228,371,938
INFO 2026-06-08 09:29:22 MarkDuplicates Tracking 78453 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 09:29:25 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 3s. Last read position: chr1:234,665,154
INFO 2026-06-08 09:29:25 MarkDuplicates Tracking 80250 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-08 09:29:27 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr1:244,854,975
INFO 2026-06-08 09:29:27 MarkDuplicates Tracking 82452 as yet unmatched pairs. 935 records in RAM.
INFO 2026-06-08 09:29:30 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:3,498,942
INFO 2026-06-08 09:29:30 MarkDuplicates Tracking 83212 as yet unmatched pairs. 82380 records in RAM.
INFO 2026-06-08 09:29:32 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:15,379,798
INFO 2026-06-08 09:29:32 MarkDuplicates Tracking 84602 as yet unmatched pairs. 83741 records in RAM.
INFO 2026-06-08 09:29:34 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:23,562,317
INFO 2026-06-08 09:29:34 MarkDuplicates Tracking 86186 as yet unmatched pairs. 85317 records in RAM.
INFO 2026-06-08 09:29:36 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:27,036,563
INFO 2026-06-08 09:29:36 MarkDuplicates Tracking 87831 as yet unmatched pairs. 86933 records in RAM.
INFO 2026-06-08 09:29:38 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:28,620,618
INFO 2026-06-08 09:29:38 MarkDuplicates Tracking 88822 as yet unmatched pairs. 87919 records in RAM.
INFO 2026-06-08 09:29:41 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,254
INFO 2026-06-08 09:29:41 MarkDuplicates Tracking 125105 as yet unmatched pairs. 86273 records in RAM.
INFO 2026-06-08 09:29:43 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:29:43 MarkDuplicates Tracking 506537 as yet unmatched pairs. 61113 records in RAM.
INFO 2026-06-08 09:29:45 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:29:45 MarkDuplicates Tracking 724279 as yet unmatched pairs. 47207 records in RAM.
INFO 2026-06-08 09:29:47 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:36,867,841
INFO 2026-06-08 09:29:47 MarkDuplicates Tracking 777484 as yet unmatched pairs. 43120 records in RAM.
INFO 2026-06-08 09:29:49 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:43,225,199
INFO 2026-06-08 09:29:49 MarkDuplicates Tracking 776155 as yet unmatched pairs. 41767 records in RAM.
INFO 2026-06-08 09:29:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:44,313,864
INFO 2026-06-08 09:29:51 MarkDuplicates Tracking 778325 as yet unmatched pairs. 43926 records in RAM.
INFO 2026-06-08 09:29:53 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:47,832,964
INFO 2026-06-08 09:29:53 MarkDuplicates Tracking 773372 as yet unmatched pairs. 38961 records in RAM.
INFO 2026-06-08 09:29:55 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:54,982,563
INFO 2026-06-08 09:29:55 MarkDuplicates Tracking 772820 as yet unmatched pairs. 38391 records in RAM.
INFO 2026-06-08 09:29:57 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:62,874,413
INFO 2026-06-08 09:29:57 MarkDuplicates Tracking 770819 as yet unmatched pairs. 36378 records in RAM.
INFO 2026-06-08 09:29:59 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:69,812,667
INFO 2026-06-08 09:29:59 MarkDuplicates Tracking 771217 as yet unmatched pairs. 36770 records in RAM.
INFO 2026-06-08 09:30:02 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 3s. Last read position: chr2:73,080,416
INFO 2026-06-08 09:30:02 MarkDuplicates Tracking 768249 as yet unmatched pairs. 33784 records in RAM.
INFO 2026-06-08 09:30:05 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:74,457,740
INFO 2026-06-08 09:30:05 MarkDuplicates Tracking 766921 as yet unmatched pairs. 32454 records in RAM.
INFO 2026-06-08 09:30:07 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:85,542,958
INFO 2026-06-08 09:30:07 MarkDuplicates Tracking 765698 as yet unmatched pairs. 31215 records in RAM.
INFO 2026-06-08 09:30:09 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:91,767,047
INFO 2026-06-08 09:30:09 MarkDuplicates Tracking 764150 as yet unmatched pairs. 29658 records in RAM.
INFO 2026-06-08 09:30:11 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:97,245,849
INFO 2026-06-08 09:30:11 MarkDuplicates Tracking 762801 as yet unmatched pairs. 28300 records in RAM.
INFO 2026-06-08 09:30:13 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:101,888,823
INFO 2026-06-08 09:30:13 MarkDuplicates Tracking 761482 as yet unmatched pairs. 26979 records in RAM.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,448
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 760670 as yet unmatched pairs. 26158 records in RAM.
INFO 2026-06-08 09:30:17 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,106
INFO 2026-06-08 09:30:17 MarkDuplicates Tracking 759664 as yet unmatched pairs. 25147 records in RAM.
INFO 2026-06-08 09:30:19 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:113,242,030
INFO 2026-06-08 09:30:19 MarkDuplicates Tracking 761992 as yet unmatched pairs. 27470 records in RAM.
INFO 2026-06-08 09:30:21 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:127,048,610
INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 757816 as yet unmatched pairs. 23277 records in RAM.
INFO 2026-06-08 09:30:23 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:131,518,558
INFO 2026-06-08 09:30:23 MarkDuplicates Tracking 755737 as yet unmatched pairs. 21192 records in RAM.
INFO 2026-06-08 09:30:25 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:151,366,204
INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 754513 as yet unmatched pairs. 19952 records in RAM.
INFO 2026-06-08 09:30:27 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:161,341,107
INFO 2026-06-08 09:30:27 MarkDuplicates Tracking 753248 as yet unmatched pairs. 18673 records in RAM.
INFO 2026-06-08 09:30:29 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:169,174,138
INFO 2026-06-08 09:30:29 MarkDuplicates Tracking 753548 as yet unmatched pairs. 18945 records in RAM.
INFO 2026-06-08 09:30:31 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:169,244,751
INFO 2026-06-08 09:30:31 MarkDuplicates Tracking 751818 as yet unmatched pairs. 17207 records in RAM.
INFO 2026-06-08 09:30:33 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:172,487,414
INFO 2026-06-08 09:30:33 MarkDuplicates Tracking 749776 as yet unmatched pairs. 15156 records in RAM.
INFO 2026-06-08 09:30:36 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:178,567,685
INFO 2026-06-08 09:30:36 MarkDuplicates Tracking 748073 as yet unmatched pairs. 13437 records in RAM.
INFO 2026-06-08 09:30:38 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:186,663,800
INFO 2026-06-08 09:30:38 MarkDuplicates Tracking 746990 as yet unmatched pairs. 12344 records in RAM.
INFO 2026-06-08 09:30:40 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:191,390,276
INFO 2026-06-08 09:30:40 MarkDuplicates Tracking 745581 as yet unmatched pairs. 10924 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 3s. Last read position: chr2:200,856,891
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 744658 as yet unmatched pairs. 9986 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:206,162,572
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 743931 as yet unmatched pairs. 9251 records in RAM.
INFO 2026-06-08 09:30:47 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr2:215,394,702
INFO 2026-06-08 09:30:47 MarkDuplicates Tracking 743661 as yet unmatched pairs. 8954 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:217,818,034
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 742501 as yet unmatched pairs. 7780 records in RAM.
INFO 2026-06-08 09:30:52 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:218,580,510
INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 739533 as yet unmatched pairs. 4809 records in RAM.
INFO 2026-06-08 09:30:54 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:226,864,868
INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 738273 as yet unmatched pairs. 3498 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:233,672,510
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 737287 as yet unmatched pairs. 2500 records in RAM.
INFO 2026-06-08 09:30:58 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:241,157,820
INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 735618 as yet unmatched pairs. 817 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:9,789,851
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 734150 as yet unmatched pairs. 33897 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:14,493,676
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 732613 as yet unmatched pairs. 32353 records in RAM.
INFO 2026-06-08 09:31:05 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:31,623,826
INFO 2026-06-08 09:31:05 MarkDuplicates Tracking 731491 as yet unmatched pairs. 31200 records in RAM.
INFO 2026-06-08 09:31:07 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:40,310,952
INFO 2026-06-08 09:31:07 MarkDuplicates Tracking 730212 as yet unmatched pairs. 29906 records in RAM.
INFO 2026-06-08 09:31:09 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:46,922,302
INFO 2026-06-08 09:31:09 MarkDuplicates Tracking 728885 as yet unmatched pairs. 28570 records in RAM.
INFO 2026-06-08 09:31:12 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:48,599,634
INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 727746 as yet unmatched pairs. 27422 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:49,131,536
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 726302 as yet unmatched pairs. 25973 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:50,302,398
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 724598 as yet unmatched pairs. 24266 records in RAM.
INFO 2026-06-08 09:31:18 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr3:52,510,011
INFO 2026-06-08 09:31:18 MarkDuplicates Tracking 723263 as yet unmatched pairs. 22928 records in RAM.
INFO 2026-06-08 09:31:20 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:59,748,996
INFO 2026-06-08 09:31:20 MarkDuplicates Tracking 721567 as yet unmatched pairs. 21224 records in RAM.
INFO 2026-06-08 09:31:22 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:93,893,099
INFO 2026-06-08 09:31:22 MarkDuplicates Tracking 720720 as yet unmatched pairs. 20350 records in RAM.
INFO 2026-06-08 09:31:24 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:107,798,557
INFO 2026-06-08 09:31:24 MarkDuplicates Tracking 719248 as yet unmatched pairs. 18865 records in RAM.
INFO 2026-06-08 09:31:26 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:114,615,548
INFO 2026-06-08 09:31:26 MarkDuplicates Tracking 717939 as yet unmatched pairs. 17549 records in RAM.
INFO 2026-06-08 09:31:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:122,699,701
INFO 2026-06-08 09:31:28 MarkDuplicates Tracking 717805 as yet unmatched pairs. 17402 records in RAM.
INFO 2026-06-08 09:31:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:123,700,647
INFO 2026-06-08 09:31:30 MarkDuplicates Tracking 715782 as yet unmatched pairs. 15369 records in RAM.
INFO 2026-06-08 09:31:32 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:126,158,626
INFO 2026-06-08 09:31:32 MarkDuplicates Tracking 715155 as yet unmatched pairs. 14729 records in RAM.
INFO 2026-06-08 09:31:34 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr3:129,315,270
INFO 2026-06-08 09:31:34 MarkDuplicates Tracking 712438 as yet unmatched pairs. 12006 records in RAM.
INFO 2026-06-08 09:31:36 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:132,672,094
INFO 2026-06-08 09:31:36 MarkDuplicates Tracking 711194 as yet unmatched pairs. 10749 records in RAM.
INFO 2026-06-08 09:31:39 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:139,374,553
INFO 2026-06-08 09:31:39 MarkDuplicates Tracking 709724 as yet unmatched pairs. 9257 records in RAM.
INFO 2026-06-08 09:31:41 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:149,520,951
INFO 2026-06-08 09:31:41 MarkDuplicates Tracking 709320 as yet unmatched pairs. 8838 records in RAM.
INFO 2026-06-08 09:31:43 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:158,660,901
INFO 2026-06-08 09:31:43 MarkDuplicates Tracking 707054 as yet unmatched pairs. 6569 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:174,035,500
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 705757 as yet unmatched pairs. 5263 records in RAM.
INFO 2026-06-08 09:31:48 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:184,245,748
INFO 2026-06-08 09:31:48 MarkDuplicates Tracking 704568 as yet unmatched pairs. 4064 records in RAM.
INFO 2026-06-08 09:31:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr3:187,726,742
INFO 2026-06-08 09:31:50 MarkDuplicates Tracking 703518 as yet unmatched pairs. 3010 records in RAM.
INFO 2026-06-08 09:31:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:195,529,803
INFO 2026-06-08 09:31:52 MarkDuplicates Tracking 701935 as yet unmatched pairs. 1416 records in RAM.
INFO 2026-06-08 09:31:54 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:196,812,794
INFO 2026-06-08 09:31:54 MarkDuplicates Tracking 700994 as yet unmatched pairs. 465 records in RAM.
INFO 2026-06-08 09:31:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:1,237,172
INFO 2026-06-08 09:31:56 MarkDuplicates Tracking 700338 as yet unmatched pairs. 25175 records in RAM.
INFO 2026-06-08 09:31:58 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:2,831,958
INFO 2026-06-08 09:31:58 MarkDuplicates Tracking 698655 as yet unmatched pairs. 23487 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:6,641,092
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 696582 as yet unmatched pairs. 21409 records in RAM.
INFO 2026-06-08 09:32:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr4:15,003,566
INFO 2026-06-08 09:32:03 MarkDuplicates Tracking 694958 as yet unmatched pairs. 19775 records in RAM.
INFO 2026-06-08 09:32:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr4:25,333,916
INFO 2026-06-08 09:32:05 MarkDuplicates Tracking 693657 as yet unmatched pairs. 18463 records in RAM.
INFO 2026-06-08 09:32:07 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:40,436,531
INFO 2026-06-08 09:32:07 MarkDuplicates Tracking 692591 as yet unmatched pairs. 17394 records in RAM.
INFO 2026-06-08 09:32:09 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr4:55,161,372
INFO 2026-06-08 09:32:09 MarkDuplicates Tracking 690980 as yet unmatched pairs. 15764 records in RAM.
INFO 2026-06-08 09:32:12 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr4:68,951,608
INFO 2026-06-08 09:32:12 MarkDuplicates Tracking 689807 as yet unmatched pairs. 14583 records in RAM.
INFO 2026-06-08 09:32:14 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:76,174,183
INFO 2026-06-08 09:32:14 MarkDuplicates Tracking 688472 as yet unmatched pairs. 13242 records in RAM.
INFO 2026-06-08 09:32:16 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr4:82,867,299
INFO 2026-06-08 09:32:16 MarkDuplicates Tracking 687642 as yet unmatched pairs. 12406 records in RAM.
INFO 2026-06-08 09:32:18 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:87,134,535
INFO 2026-06-08 09:32:18 MarkDuplicates Tracking 686372 as yet unmatched pairs. 11128 records in RAM.
INFO 2026-06-08 09:32:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr4:88,750,524
INFO 2026-06-08 09:32:20 MarkDuplicates Tracking 685260 as yet unmatched pairs. 10014 records in RAM.
INFO 2026-06-08 09:32:22 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr4:107,908,560
INFO 2026-06-08 09:32:22 MarkDuplicates Tracking 683514 as yet unmatched pairs. 8246 records in RAM.
INFO 2026-06-08 09:32:24 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr4:113,513,328
INFO 2026-06-08 09:32:24 MarkDuplicates Tracking 682417 as yet unmatched pairs. 7142 records in RAM.
INFO 2026-06-08 09:32:26 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:127,812,821
INFO 2026-06-08 09:32:26 MarkDuplicates Tracking 681094 as yet unmatched pairs. 5814 records in RAM.
INFO 2026-06-08 09:32:28 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr4:145,112,235
INFO 2026-06-08 09:32:28 MarkDuplicates Tracking 679825 as yet unmatched pairs. 4536 records in RAM.
INFO 2026-06-08 09:32:30 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr4:154,547,021
INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 678752 as yet unmatched pairs. 3442 records in RAM.
INFO 2026-06-08 09:32:32 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr4:174,237,381
INFO 2026-06-08 09:32:32 MarkDuplicates Tracking 677430 as yet unmatched pairs. 2091 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr4:186,588,593
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 676757 as yet unmatched pairs. 1408 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr5:864,526
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 674935 as yet unmatched pairs. 41807 records in RAM.
INFO 2026-06-08 09:32:40 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr5:9,202,032
INFO 2026-06-08 09:32:40 MarkDuplicates Tracking 673561 as yet unmatched pairs. 40431 records in RAM.
INFO 2026-06-08 09:32:42 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:14,419,992
INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 672316 as yet unmatched pairs. 39177 records in RAM.
INFO 2026-06-08 09:32:44 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr5:32,015,865
INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 670761 as yet unmatched pairs. 37611 records in RAM.
INFO 2026-06-08 09:32:46 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:37,230,923
INFO 2026-06-08 09:32:46 MarkDuplicates Tracking 669702 as yet unmatched pairs. 36537 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr5:43,547,796
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 668645 as yet unmatched pairs. 35468 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr5:58,974,658
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 667086 as yet unmatched pairs. 33899 records in RAM.
INFO 2026-06-08 09:32:52 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:69,862,687
INFO 2026-06-08 09:32:52 MarkDuplicates Tracking 665762 as yet unmatched pairs. 32558 records in RAM.
INFO 2026-06-08 09:32:54 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:73,504,390
INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 665707 as yet unmatched pairs. 32495 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:79,120,431
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 663947 as yet unmatched pairs. 30729 records in RAM.
INFO 2026-06-08 09:32:58 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:93,683,256
INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 662437 as yet unmatched pairs. 29208 records in RAM.
INFO 2026-06-08 09:33:01 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:103,138,428
INFO 2026-06-08 09:33:01 MarkDuplicates Tracking 661161 as yet unmatched pairs. 27919 records in RAM.
INFO 2026-06-08 09:33:02 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:122,066,724
INFO 2026-06-08 09:33:02 MarkDuplicates Tracking 660130 as yet unmatched pairs. 26868 records in RAM.
INFO 2026-06-08 09:33:05 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:132,734,352
INFO 2026-06-08 09:33:05 MarkDuplicates Tracking 658630 as yet unmatched pairs. 25356 records in RAM.
INFO 2026-06-08 09:33:07 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,401
INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 657475 as yet unmatched pairs. 24186 records in RAM.
INFO 2026-06-08 09:33:09 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr5:139,528,862
INFO 2026-06-08 09:33:09 MarkDuplicates Tracking 656911 as yet unmatched pairs. 23615 records in RAM.
INFO 2026-06-08 09:33:11 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:141,183,861
INFO 2026-06-08 09:33:11 MarkDuplicates Tracking 655942 as yet unmatched pairs. 22543 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:141,854,411
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 653872 as yet unmatched pairs. 20467 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:149,509,942
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 652697 as yet unmatched pairs. 19268 records in RAM.
INFO 2026-06-08 09:33:17 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,059
INFO 2026-06-08 09:33:17 MarkDuplicates Tracking 655667 as yet unmatched pairs. 22233 records in RAM.
INFO 2026-06-08 09:33:20 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr5:150,403,173
INFO 2026-06-08 09:33:20 MarkDuplicates Tracking 665877 as yet unmatched pairs. 32441 records in RAM.
INFO 2026-06-08 09:33:22 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,155
INFO 2026-06-08 09:33:22 MarkDuplicates Tracking 684476 as yet unmatched pairs. 51033 records in RAM.
INFO 2026-06-08 09:33:24 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,265
INFO 2026-06-08 09:33:24 MarkDuplicates Tracking 659376 as yet unmatched pairs. 25932 records in RAM.
INFO 2026-06-08 09:33:26 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:151,026,882
INFO 2026-06-08 09:33:26 MarkDuplicates Tracking 646750 as yet unmatched pairs. 13306 records in RAM.
INFO 2026-06-08 09:33:28 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:154,803,547
INFO 2026-06-08 09:33:28 MarkDuplicates Tracking 643995 as yet unmatched pairs. 10537 records in RAM.
INFO 2026-06-08 09:33:30 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr5:168,760,933
INFO 2026-06-08 09:33:30 MarkDuplicates Tracking 642507 as yet unmatched pairs. 9028 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,765
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 649937 as yet unmatched pairs. 16455 records in RAM.
INFO 2026-06-08 09:33:34 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr5:176,347,700
INFO 2026-06-08 09:33:34 MarkDuplicates Tracking 640200 as yet unmatched pairs. 6716 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:177,594,254
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 638695 as yet unmatched pairs. 5205 records in RAM.
INFO 2026-06-08 09:33:39 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr5:179,622,958
INFO 2026-06-08 09:33:39 MarkDuplicates Tracking 637062 as yet unmatched pairs. 3558 records in RAM.
INFO 2026-06-08 09:33:41 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr5:179,833,530
INFO 2026-06-08 09:33:41 MarkDuplicates Tracking 637479 as yet unmatched pairs. 3974 records in RAM.
INFO 2026-06-08 09:33:43 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr5:181,237,031
INFO 2026-06-08 09:33:43 MarkDuplicates Tracking 636345 as yet unmatched pairs. 2832 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr6:4,935,546
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 632709 as yet unmatched pairs. 55369 records in RAM.
INFO 2026-06-08 09:33:47 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:11,191,157
INFO 2026-06-08 09:33:47 MarkDuplicates Tracking 631422 as yet unmatched pairs. 54072 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr6:24,706,211
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 630530 as yet unmatched pairs. 53150 records in RAM.
INFO 2026-06-08 09:33:52 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:26,055,805
INFO 2026-06-08 09:33:52 MarkDuplicates Tracking 629296 as yet unmatched pairs. 51903 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,458,077
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 628024 as yet unmatched pairs. 50630 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:29,889,580
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 627388 as yet unmatched pairs. 49984 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:30,007,560
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 625379 as yet unmatched pairs. 47969 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:30,740,192
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 624326 as yet unmatched pairs. 46894 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,075
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 626590 as yet unmatched pairs. 49151 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr6:31,624,268
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 621828 as yet unmatched pairs. 44383 records in RAM.
INFO 2026-06-08 09:34:06 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:31,690,539
INFO 2026-06-08 09:34:06 MarkDuplicates Tracking 619994 as yet unmatched pairs. 42543 records in RAM.
INFO 2026-06-08 09:34:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,204
INFO 2026-06-08 09:34:08 MarkDuplicates Tracking 619726 as yet unmatched pairs. 42273 records in RAM.
INFO 2026-06-08 09:34:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:31,984,142
INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 619076 as yet unmatched pairs. 41616 records in RAM.
INFO 2026-06-08 09:34:12 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,996,872
INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 623243 as yet unmatched pairs. 45782 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:32,016,840
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 624612 as yet unmatched pairs. 47147 records in RAM.
INFO 2026-06-08 09:34:16 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:32,029,708
INFO 2026-06-08 09:34:16 MarkDuplicates Tracking 620044 as yet unmatched pairs. 42579 records in RAM.
INFO 2026-06-08 09:34:18 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr6:32,187,868
INFO 2026-06-08 09:34:18 MarkDuplicates Tracking 614532 as yet unmatched pairs. 37053 records in RAM.
INFO 2026-06-08 09:34:20 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:32,745,820
INFO 2026-06-08 09:34:20 MarkDuplicates Tracking 613935 as yet unmatched pairs. 36454 records in RAM.
INFO 2026-06-08 09:34:22 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:33,073,471
INFO 2026-06-08 09:34:22 MarkDuplicates Tracking 612415 as yet unmatched pairs. 34930 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:33,413,407
INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 610540 as yet unmatched pairs. 33044 records in RAM.
INFO 2026-06-08 09:34:26 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:35,290,667
INFO 2026-06-08 09:34:26 MarkDuplicates Tracking 608784 as yet unmatched pairs. 31278 records in RAM.
INFO 2026-06-08 09:34:28 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr6:37,474,623
INFO 2026-06-08 09:34:28 MarkDuplicates Tracking 607369 as yet unmatched pairs. 29844 records in RAM.
INFO 2026-06-08 09:34:30 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:43,048,465
INFO 2026-06-08 09:34:30 MarkDuplicates Tracking 606160 as yet unmatched pairs. 28631 records in RAM.
INFO 2026-06-08 09:34:32 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:43,770,709
INFO 2026-06-08 09:34:32 MarkDuplicates Tracking 609942 as yet unmatched pairs. 32410 records in RAM.
INFO 2026-06-08 09:34:34 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:43,777,595
INFO 2026-06-08 09:34:34 MarkDuplicates Tracking 606293 as yet unmatched pairs. 28758 records in RAM.
INFO 2026-06-08 09:34:37 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:44,254,988
INFO 2026-06-08 09:34:37 MarkDuplicates Tracking 601506 as yet unmatched pairs. 23964 records in RAM.
INFO 2026-06-08 09:34:39 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr6:52,026,161
INFO 2026-06-08 09:34:39 MarkDuplicates Tracking 600248 as yet unmatched pairs. 22694 records in RAM.
INFO 2026-06-08 09:34:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr6:57,147,149
INFO 2026-06-08 09:34:41 MarkDuplicates Tracking 598712 as yet unmatched pairs. 21128 records in RAM.
INFO 2026-06-08 09:34:43 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr6:78,988,249
INFO 2026-06-08 09:34:43 MarkDuplicates Tracking 597587 as yet unmatched pairs. 19984 records in RAM.
INFO 2026-06-08 09:34:45 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr6:89,342,354
INFO 2026-06-08 09:34:45 MarkDuplicates Tracking 596371 as yet unmatched pairs. 18767 records in RAM.
INFO 2026-06-08 09:34:47 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr6:106,971,710
INFO 2026-06-08 09:34:47 MarkDuplicates Tracking 599066 as yet unmatched pairs. 21450 records in RAM.
INFO 2026-06-08 09:34:50 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr6:111,373,576
INFO 2026-06-08 09:34:50 MarkDuplicates Tracking 593757 as yet unmatched pairs. 16124 records in RAM.
INFO 2026-06-08 09:34:52 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr6:122,781,181
INFO 2026-06-08 09:34:52 MarkDuplicates Tracking 592498 as yet unmatched pairs. 14852 records in RAM.
INFO 2026-06-08 09:34:54 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr6:131,733,634
INFO 2026-06-08 09:34:54 MarkDuplicates Tracking 591584 as yet unmatched pairs. 13923 records in RAM.
INFO 2026-06-08 09:34:56 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr6:139,373,153
INFO 2026-06-08 09:34:56 MarkDuplicates Tracking 590756 as yet unmatched pairs. 13093 records in RAM.
INFO 2026-06-08 09:34:58 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr6:147,359,214
INFO 2026-06-08 09:34:58 MarkDuplicates Tracking 588165 as yet unmatched pairs. 10499 records in RAM.
INFO 2026-06-08 09:35:00 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr6:151,349,471
INFO 2026-06-08 09:35:00 MarkDuplicates Tracking 591887 as yet unmatched pairs. 14201 records in RAM.
INFO 2026-06-08 09:35:02 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr6:151,352,081
INFO 2026-06-08 09:35:02 MarkDuplicates Tracking 588545 as yet unmatched pairs. 10856 records in RAM.
INFO 2026-06-08 09:35:04 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,423
INFO 2026-06-08 09:35:04 MarkDuplicates Tracking 584552 as yet unmatched pairs. 6854 records in RAM.
INFO 2026-06-08 09:35:06 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr6:158,767,478
INFO 2026-06-08 09:35:06 MarkDuplicates Tracking 588222 as yet unmatched pairs. 10517 records in RAM.
INFO 2026-06-08 09:35:08 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,321
INFO 2026-06-08 09:35:08 MarkDuplicates Tracking 584074 as yet unmatched pairs. 6369 records in RAM.
INFO 2026-06-08 09:35:11 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr6:160,258,593
INFO 2026-06-08 09:35:11 MarkDuplicates Tracking 581597 as yet unmatched pairs. 3886 records in RAM.
INFO 2026-06-08 09:35:13 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr6:166,999,482
INFO 2026-06-08 09:35:13 MarkDuplicates Tracking 578652 as yet unmatched pairs. 931 records in RAM.
INFO 2026-06-08 09:35:15 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr7:1,476,263
INFO 2026-06-08 09:35:15 MarkDuplicates Tracking 577187 as yet unmatched pairs. 42601 records in RAM.
INFO 2026-06-08 09:35:17 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:5,230,858
INFO 2026-06-08 09:35:17 MarkDuplicates Tracking 575094 as yet unmatched pairs. 40494 records in RAM.
INFO 2026-06-08 09:35:20 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,266
INFO 2026-06-08 09:35:20 MarkDuplicates Tracking 576086 as yet unmatched pairs. 41476 records in RAM.
INFO 2026-06-08 09:35:21 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:18,634,626
INFO 2026-06-08 09:35:21 MarkDuplicates Tracking 572224 as yet unmatched pairs. 37603 records in RAM.
INFO 2026-06-08 09:35:24 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr7:26,293,105
INFO 2026-06-08 09:35:24 MarkDuplicates Tracking 571223 as yet unmatched pairs. 36596 records in RAM.
INFO 2026-06-08 09:35:26 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 2s. Last read position: chr7:33,015,765
INFO 2026-06-08 09:35:26 MarkDuplicates Tracking 569884 as yet unmatched pairs. 35246 records in RAM.
INFO 2026-06-08 09:35:28 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:44,106,673
INFO 2026-06-08 09:35:28 MarkDuplicates Tracking 568407 as yet unmatched pairs. 33763 records in RAM.
INFO 2026-06-08 09:35:30 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr7:45,920,887
INFO 2026-06-08 09:35:30 MarkDuplicates Tracking 570485 as yet unmatched pairs. 35834 records in RAM.
INFO 2026-06-08 09:35:32 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:55,152,549
INFO 2026-06-08 09:35:32 MarkDuplicates Tracking 568762 as yet unmatched pairs. 34098 records in RAM.
INFO 2026-06-08 09:35:34 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr7:55,200,327
INFO 2026-06-08 09:35:34 MarkDuplicates Tracking 572595 as yet unmatched pairs. 37931 records in RAM.
INFO 2026-06-08 09:35:37 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr7:56,054,449
INFO 2026-06-08 09:35:37 MarkDuplicates Tracking 562436 as yet unmatched pairs. 27770 records in RAM.
INFO 2026-06-08 09:35:39 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,231
INFO 2026-06-08 09:35:39 MarkDuplicates Tracking 562140 as yet unmatched pairs. 27455 records in RAM.
INFO 2026-06-08 09:35:40 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,608
INFO 2026-06-08 09:35:40 MarkDuplicates Tracking 560894 as yet unmatched pairs. 26194 records in RAM.
INFO 2026-06-08 09:35:42 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr7:75,415,745
INFO 2026-06-08 09:35:42 MarkDuplicates Tracking 559607 as yet unmatched pairs. 24901 records in RAM.
INFO 2026-06-08 09:35:44 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:76,330,143
INFO 2026-06-08 09:35:44 MarkDuplicates Tracking 558468 as yet unmatched pairs. 23759 records in RAM.
INFO 2026-06-08 09:35:46 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:87,519,360
INFO 2026-06-08 09:35:46 MarkDuplicates Tracking 557454 as yet unmatched pairs. 22729 records in RAM.
INFO 2026-06-08 09:35:48 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr7:92,447,910
INFO 2026-06-08 09:35:48 MarkDuplicates Tracking 555921 as yet unmatched pairs. 21187 records in RAM.
INFO 2026-06-08 09:35:51 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr7:98,193,500
INFO 2026-06-08 09:35:51 MarkDuplicates Tracking 554736 as yet unmatched pairs. 19991 records in RAM.
INFO 2026-06-08 09:35:52 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,089,718
INFO 2026-06-08 09:35:52 MarkDuplicates Tracking 553276 as yet unmatched pairs. 18513 records in RAM.
INFO 2026-06-08 09:35:55 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr7:100,683,443
INFO 2026-06-08 09:35:55 MarkDuplicates Tracking 551894 as yet unmatched pairs. 17126 records in RAM.
INFO 2026-06-08 09:35:56 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:102,170,454
INFO 2026-06-08 09:35:56 MarkDuplicates Tracking 550690 as yet unmatched pairs. 15911 records in RAM.
INFO 2026-06-08 09:35:58 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr7:102,657,525
INFO 2026-06-08 09:35:58 MarkDuplicates Tracking 550121 as yet unmatched pairs. 15340 records in RAM.
INFO 2026-06-08 09:36:00 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr7:108,177,999
INFO 2026-06-08 09:36:00 MarkDuplicates Tracking 548522 as yet unmatched pairs. 13735 records in RAM.
INFO 2026-06-08 09:36:02 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:116,775,042
INFO 2026-06-08 09:36:02 MarkDuplicates Tracking 549115 as yet unmatched pairs. 14293 records in RAM.
INFO 2026-06-08 09:36:05 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr7:127,904,744
INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 547331 as yet unmatched pairs. 12502 records in RAM.
INFO 2026-06-08 09:36:07 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr7:129,834,949
INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 544879 as yet unmatched pairs. 10047 records in RAM.
INFO 2026-06-08 09:36:09 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr7:135,164,871
INFO 2026-06-08 09:36:09 MarkDuplicates Tracking 544263 as yet unmatched pairs. 9418 records in RAM.
INFO 2026-06-08 09:36:11 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr7:138,919,408
INFO 2026-06-08 09:36:11 MarkDuplicates Tracking 542533 as yet unmatched pairs. 7674 records in RAM.
INFO 2026-06-08 09:36:13 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:140,778,022
INFO 2026-06-08 09:36:13 MarkDuplicates Tracking 541726 as yet unmatched pairs. 6855 records in RAM.
INFO 2026-06-08 09:36:15 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr7:143,723,232
INFO 2026-06-08 09:36:15 MarkDuplicates Tracking 539875 as yet unmatched pairs. 5004 records in RAM.
INFO 2026-06-08 09:36:17 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr7:149,733,499
INFO 2026-06-08 09:36:17 MarkDuplicates Tracking 539368 as yet unmatched pairs. 4496 records in RAM.
INFO 2026-06-08 09:36:19 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr7:151,017,036
INFO 2026-06-08 09:36:19 MarkDuplicates Tracking 537089 as yet unmatched pairs. 2207 records in RAM.
INFO 2026-06-08 09:36:21 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:155,706,925
INFO 2026-06-08 09:36:21 MarkDuplicates Tracking 535760 as yet unmatched pairs. 864 records in RAM.
INFO 2026-06-08 09:36:23 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr8:7,753,689
INFO 2026-06-08 09:36:23 MarkDuplicates Tracking 534224 as yet unmatched pairs. 30209 records in RAM.
INFO 2026-06-08 09:36:26 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr8:17,953,027
INFO 2026-06-08 09:36:26 MarkDuplicates Tracking 533049 as yet unmatched pairs. 29024 records in RAM.
INFO 2026-06-08 09:36:28 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:22,604,830
INFO 2026-06-08 09:36:28 MarkDuplicates Tracking 532144 as yet unmatched pairs. 28116 records in RAM.
INFO 2026-06-08 09:36:30 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr8:26,408,323
INFO 2026-06-08 09:36:30 MarkDuplicates Tracking 530576 as yet unmatched pairs. 26530 records in RAM.
INFO 2026-06-08 09:36:32 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:28,360,985
INFO 2026-06-08 09:36:32 MarkDuplicates Tracking 530703 as yet unmatched pairs. 26644 records in RAM.
INFO 2026-06-08 09:36:34 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:37,696,032
INFO 2026-06-08 09:36:34 MarkDuplicates Tracking 527075 as yet unmatched pairs. 23010 records in RAM.
INFO 2026-06-08 09:36:36 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr8:38,820,149
INFO 2026-06-08 09:36:36 MarkDuplicates Tracking 527448 as yet unmatched pairs. 23363 records in RAM.
INFO 2026-06-08 09:36:38 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:42,331,226
INFO 2026-06-08 09:36:38 MarkDuplicates Tracking 524623 as yet unmatched pairs. 20532 records in RAM.
INFO 2026-06-08 09:36:41 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr8:56,074,143
INFO 2026-06-08 09:36:41 MarkDuplicates Tracking 522959 as yet unmatched pairs. 18853 records in RAM.
INFO 2026-06-08 09:36:43 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr8:70,141,220
INFO 2026-06-08 09:36:43 MarkDuplicates Tracking 522343 as yet unmatched pairs. 18217 records in RAM.
INFO 2026-06-08 09:36:45 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:86,532,572
INFO 2026-06-08 09:36:45 MarkDuplicates Tracking 521004 as yet unmatched pairs. 16869 records in RAM.
INFO 2026-06-08 09:36:47 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr8:99,136,683
INFO 2026-06-08 09:36:47 MarkDuplicates Tracking 519436 as yet unmatched pairs. 15283 records in RAM.
INFO 2026-06-08 09:36:49 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr8:104,428,009
INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 518761 as yet unmatched pairs. 14605 records in RAM.
INFO 2026-06-08 09:36:51 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:123,693,264
INFO 2026-06-08 09:36:51 MarkDuplicates Tracking 516918 as yet unmatched pairs. 12755 records in RAM.
INFO 2026-06-08 09:36:53 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr8:133,238,811
INFO 2026-06-08 09:36:53 MarkDuplicates Tracking 520057 as yet unmatched pairs. 15872 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr8:133,259,220
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 517283 as yet unmatched pairs. 13092 records in RAM.
INFO 2026-06-08 09:36:57 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr8:141,430,939
INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 512928 as yet unmatched pairs. 8721 records in RAM.
INFO 2026-06-08 09:36:59 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr8:143,816,538
INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 511117 as yet unmatched pairs. 6904 records in RAM.
INFO 2026-06-08 09:37:01 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,627
INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 511454 as yet unmatched pairs. 7241 records in RAM.
INFO 2026-06-08 09:37:03 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,116
INFO 2026-06-08 09:37:03 MarkDuplicates Tracking 512062 as yet unmatched pairs. 7843 records in RAM.
INFO 2026-06-08 09:37:04 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,872
INFO 2026-06-08 09:37:04 MarkDuplicates Tracking 509134 as yet unmatched pairs. 4915 records in RAM.
INFO 2026-06-08 09:37:06 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,139
INFO 2026-06-08 09:37:06 MarkDuplicates Tracking 508097 as yet unmatched pairs. 3876 records in RAM.
INFO 2026-06-08 09:37:08 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,106,562
INFO 2026-06-08 09:37:08 MarkDuplicates Tracking 506298 as yet unmatched pairs. 2074 records in RAM.
INFO 2026-06-08 09:37:10 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr9:16,819
INFO 2026-06-08 09:37:10 MarkDuplicates Tracking 504241 as yet unmatched pairs. 34343 records in RAM.
INFO 2026-06-08 09:37:12 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr9:5,811,113
INFO 2026-06-08 09:37:12 MarkDuplicates Tracking 503066 as yet unmatched pairs. 33157 records in RAM.
INFO 2026-06-08 09:37:14 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,364
INFO 2026-06-08 09:37:14 MarkDuplicates Tracking 503865 as yet unmatched pairs. 33935 records in RAM.
INFO 2026-06-08 09:37:17 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr9:19,379,502
INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 500847 as yet unmatched pairs. 30910 records in RAM.
INFO 2026-06-08 09:37:18 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:34,614,749
INFO 2026-06-08 09:37:18 MarkDuplicates Tracking 499761 as yet unmatched pairs. 29816 records in RAM.
INFO 2026-06-08 09:37:21 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr9:35,675,917
INFO 2026-06-08 09:37:21 MarkDuplicates Tracking 502276 as yet unmatched pairs. 32319 records in RAM.
INFO 2026-06-08 09:37:23 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr9:35,906,310
INFO 2026-06-08 09:37:23 MarkDuplicates Tracking 496222 as yet unmatched pairs. 26263 records in RAM.
INFO 2026-06-08 09:37:25 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:69,217,651
INFO 2026-06-08 09:37:25 MarkDuplicates Tracking 495504 as yet unmatched pairs. 25502 records in RAM.
INFO 2026-06-08 09:37:27 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr9:72,924,088
INFO 2026-06-08 09:37:27 MarkDuplicates Tracking 498773 as yet unmatched pairs. 28750 records in RAM.
INFO 2026-06-08 09:37:29 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:76,710,114
INFO 2026-06-08 09:37:29 MarkDuplicates Tracking 494088 as yet unmatched pairs. 24063 records in RAM.
INFO 2026-06-08 09:37:31 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr9:86,046,502
INFO 2026-06-08 09:37:31 MarkDuplicates Tracking 491639 as yet unmatched pairs. 21597 records in RAM.
INFO 2026-06-08 09:37:33 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr9:93,527,179
INFO 2026-06-08 09:37:33 MarkDuplicates Tracking 490275 as yet unmatched pairs. 20231 records in RAM.
INFO 2026-06-08 09:37:35 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:100,320,358
INFO 2026-06-08 09:37:35 MarkDuplicates Tracking 488855 as yet unmatched pairs. 18801 records in RAM.
INFO 2026-06-08 09:37:37 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:110,138,452
INFO 2026-06-08 09:37:37 MarkDuplicates Tracking 487741 as yet unmatched pairs. 17674 records in RAM.
INFO 2026-06-08 09:37:39 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:114,095,029
INFO 2026-06-08 09:37:39 MarkDuplicates Tracking 487541 as yet unmatched pairs. 17472 records in RAM.
INFO 2026-06-08 09:37:41 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr9:120,491,324
INFO 2026-06-08 09:37:41 MarkDuplicates Tracking 484498 as yet unmatched pairs. 14428 records in RAM.
INFO 2026-06-08 09:37:43 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr9:123,403,401
INFO 2026-06-08 09:37:43 MarkDuplicates Tracking 483348 as yet unmatched pairs. 13275 records in RAM.
INFO 2026-06-08 09:37:45 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:127,507,076
INFO 2026-06-08 09:37:45 MarkDuplicates Tracking 482113 as yet unmatched pairs. 12027 records in RAM.
INFO 2026-06-08 09:37:48 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr9:128,321,616
INFO 2026-06-08 09:37:48 MarkDuplicates Tracking 480297 as yet unmatched pairs. 10201 records in RAM.
INFO 2026-06-08 09:37:50 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr9:129,140,136
INFO 2026-06-08 09:37:50 MarkDuplicates Tracking 479733 as yet unmatched pairs. 9632 records in RAM.
INFO 2026-06-08 09:37:52 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr9:131,459,163
INFO 2026-06-08 09:37:52 MarkDuplicates Tracking 477568 as yet unmatched pairs. 7466 records in RAM.
INFO 2026-06-08 09:37:54 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr9:133,349,571
INFO 2026-06-08 09:37:54 MarkDuplicates Tracking 477511 as yet unmatched pairs. 7403 records in RAM.
INFO 2026-06-08 09:37:56 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr9:136,431,944
INFO 2026-06-08 09:37:56 MarkDuplicates Tracking 474463 as yet unmatched pairs. 4347 records in RAM.
INFO 2026-06-08 09:37:58 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr9:136,859,905
INFO 2026-06-08 09:37:58 MarkDuplicates Tracking 472788 as yet unmatched pairs. 2664 records in RAM.
INFO 2026-06-08 09:38:00 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr9:137,272,133
INFO 2026-06-08 09:38:00 MarkDuplicates Tracking 471465 as yet unmatched pairs. 1326 records in RAM.
INFO 2026-06-08 09:38:02 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr10:3,108,729
INFO 2026-06-08 09:38:02 MarkDuplicates Tracking 470163 as yet unmatched pairs. 32002 records in RAM.
INFO 2026-06-08 09:38:04 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:5,768,263
INFO 2026-06-08 09:38:04 MarkDuplicates Tracking 468719 as yet unmatched pairs. 30555 records in RAM.
INFO 2026-06-08 09:38:06 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:13,660,330
INFO 2026-06-08 09:38:06 MarkDuplicates Tracking 466807 as yet unmatched pairs. 28642 records in RAM.
INFO 2026-06-08 09:38:09 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr10:17,043,922
INFO 2026-06-08 09:38:09 MarkDuplicates Tracking 467564 as yet unmatched pairs. 29393 records in RAM.
INFO 2026-06-08 09:38:11 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:17,644,205
INFO 2026-06-08 09:38:11 MarkDuplicates Tracking 464009 as yet unmatched pairs. 25832 records in RAM.
INFO 2026-06-08 09:38:13 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr10:28,583,361
INFO 2026-06-08 09:38:13 MarkDuplicates Tracking 462908 as yet unmatched pairs. 24729 records in RAM.
INFO 2026-06-08 09:38:15 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr10:32,929,940
INFO 2026-06-08 09:38:15 MarkDuplicates Tracking 462366 as yet unmatched pairs. 24182 records in RAM.
INFO 2026-06-08 09:38:17 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr10:44,970,249
INFO 2026-06-08 09:38:17 MarkDuplicates Tracking 460763 as yet unmatched pairs. 22577 records in RAM.
INFO 2026-06-08 09:38:19 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr10:46,014,469
INFO 2026-06-08 09:38:19 MarkDuplicates Tracking 460263 as yet unmatched pairs. 22076 records in RAM.
INFO 2026-06-08 09:38:21 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr10:50,811,025
INFO 2026-06-08 09:38:21 MarkDuplicates Tracking 458347 as yet unmatched pairs. 20157 records in RAM.
INFO 2026-06-08 09:38:23 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr10:59,793,070
INFO 2026-06-08 09:38:23 MarkDuplicates Tracking 458050 as yet unmatched pairs. 19854 records in RAM.
INFO 2026-06-08 09:38:25 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:68,339,139
INFO 2026-06-08 09:38:25 MarkDuplicates Tracking 455683 as yet unmatched pairs. 17481 records in RAM.
INFO 2026-06-08 09:38:27 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr10:72,274,291
INFO 2026-06-08 09:38:27 MarkDuplicates Tracking 457928 as yet unmatched pairs. 19722 records in RAM.
INFO 2026-06-08 09:38:29 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr10:73,792,696
INFO 2026-06-08 09:38:29 MarkDuplicates Tracking 452754 as yet unmatched pairs. 14539 records in RAM.
INFO 2026-06-08 09:38:31 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr10:79,645,286
INFO 2026-06-08 09:38:31 MarkDuplicates Tracking 451421 as yet unmatched pairs. 13190 records in RAM.
INFO 2026-06-08 09:38:33 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr10:87,152,356
INFO 2026-06-08 09:38:33 MarkDuplicates Tracking 450327 as yet unmatched pairs. 12086 records in RAM.
INFO 2026-06-08 09:38:35 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:89,438,545
INFO 2026-06-08 09:38:35 MarkDuplicates Tracking 449609 as yet unmatched pairs. 11366 records in RAM.
INFO 2026-06-08 09:38:37 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr10:95,868,292
INFO 2026-06-08 09:38:37 MarkDuplicates Tracking 447936 as yet unmatched pairs. 9678 records in RAM.
INFO 2026-06-08 09:38:39 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr10:99,610,931
INFO 2026-06-08 09:38:39 MarkDuplicates Tracking 446354 as yet unmatched pairs. 8075 records in RAM.
INFO 2026-06-08 09:38:41 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr10:101,006,738
INFO 2026-06-08 09:38:41 MarkDuplicates Tracking 445195 as yet unmatched pairs. 6909 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr10:102,812,851
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 443578 as yet unmatched pairs. 5291 records in RAM.
INFO 2026-06-08 09:38:46 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr10:113,729,427
INFO 2026-06-08 09:38:46 MarkDuplicates Tracking 442236 as yet unmatched pairs. 3944 records in RAM.
INFO 2026-06-08 09:38:48 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr10:119,920,888
INFO 2026-06-08 09:38:48 MarkDuplicates Tracking 440913 as yet unmatched pairs. 2612 records in RAM.
INFO 2026-06-08 09:38:50 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr10:127,031,735
INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 439602 as yet unmatched pairs. 1289 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr11:280,213
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 438137 as yet unmatched pairs. 55626 records in RAM.
INFO 2026-06-08 09:38:55 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr11:558,162
INFO 2026-06-08 09:38:55 MarkDuplicates Tracking 436698 as yet unmatched pairs. 54181 records in RAM.
INFO 2026-06-08 09:38:57 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr11:679,725
INFO 2026-06-08 09:38:57 MarkDuplicates Tracking 435203 as yet unmatched pairs. 52684 records in RAM.
INFO 2026-06-08 09:38:59 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:850,216
INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 434458 as yet unmatched pairs. 51939 records in RAM.
INFO 2026-06-08 09:39:01 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr11:2,393,949
INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 432937 as yet unmatched pairs. 50408 records in RAM.
INFO 2026-06-08 09:39:03 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:6,401,040
INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 430540 as yet unmatched pairs. 48010 records in RAM.
INFO 2026-06-08 09:39:05 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:9,150,679
INFO 2026-06-08 09:39:05 MarkDuplicates Tracking 428901 as yet unmatched pairs. 46367 records in RAM.
INFO 2026-06-08 09:39:07 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr11:12,204,338
INFO 2026-06-08 09:39:07 MarkDuplicates Tracking 427416 as yet unmatched pairs. 44877 records in RAM.
INFO 2026-06-08 09:39:10 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr11:18,394,625
INFO 2026-06-08 09:39:10 MarkDuplicates Tracking 432164 as yet unmatched pairs. 49619 records in RAM.
INFO 2026-06-08 09:39:11 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:27,368,712
INFO 2026-06-08 09:39:11 MarkDuplicates Tracking 425187 as yet unmatched pairs. 42642 records in RAM.
INFO 2026-06-08 09:39:14 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr11:35,685,298
INFO 2026-06-08 09:39:14 MarkDuplicates Tracking 423692 as yet unmatched pairs. 41138 records in RAM.
INFO 2026-06-08 09:39:16 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:46,818,480
INFO 2026-06-08 09:39:16 MarkDuplicates Tracking 422226 as yet unmatched pairs. 39670 records in RAM.
INFO 2026-06-08 09:39:18 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr11:57,416,595
INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 420800 as yet unmatched pairs. 38241 records in RAM.
INFO 2026-06-08 09:39:20 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr11:57,811,471
INFO 2026-06-08 09:39:20 MarkDuplicates Tracking 420442 as yet unmatched pairs. 37882 records in RAM.
INFO 2026-06-08 09:39:22 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:61,351,003
INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 418464 as yet unmatched pairs. 35901 records in RAM.
INFO 2026-06-08 09:39:24 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr11:62,520,219
INFO 2026-06-08 09:39:24 MarkDuplicates Tracking 417477 as yet unmatched pairs. 34904 records in RAM.
INFO 2026-06-08 09:39:26 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:62,527,875
INFO 2026-06-08 09:39:26 MarkDuplicates Tracking 416913 as yet unmatched pairs. 34339 records in RAM.
INFO 2026-06-08 09:39:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:62,560,304
INFO 2026-06-08 09:39:28 MarkDuplicates Tracking 415434 as yet unmatched pairs. 32859 records in RAM.
INFO 2026-06-08 09:39:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr11:62,888,522
INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 414140 as yet unmatched pairs. 31558 records in RAM.
INFO 2026-06-08 09:39:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr11:64,265,339
INFO 2026-06-08 09:39:32 MarkDuplicates Tracking 411543 as yet unmatched pairs. 28960 records in RAM.
INFO 2026-06-08 09:39:34 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:64,897,678
INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 410023 as yet unmatched pairs. 27435 records in RAM.
INFO 2026-06-08 09:39:36 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr11:65,547,470
INFO 2026-06-08 09:39:36 MarkDuplicates Tracking 408485 as yet unmatched pairs. 25885 records in RAM.
INFO 2026-06-08 09:39:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,866,991
INFO 2026-06-08 09:39:38 MarkDuplicates Tracking 406908 as yet unmatched pairs. 24306 records in RAM.
INFO 2026-06-08 09:39:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr11:66,624,520
INFO 2026-06-08 09:39:40 MarkDuplicates Tracking 405478 as yet unmatched pairs. 22871 records in RAM.
INFO 2026-06-08 09:39:43 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr11:67,610,446
INFO 2026-06-08 09:39:43 MarkDuplicates Tracking 403526 as yet unmatched pairs. 20915 records in RAM.
INFO 2026-06-08 09:39:45 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,305
INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 404947 as yet unmatched pairs. 22332 records in RAM.
INFO 2026-06-08 09:39:47 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:71,490,956
INFO 2026-06-08 09:39:47 MarkDuplicates Tracking 400589 as yet unmatched pairs. 17973 records in RAM.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr11:72,822,054
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 399143 as yet unmatched pairs. 16519 records in RAM.
INFO 2026-06-08 09:39:51 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr11:75,404,037
INFO 2026-06-08 09:39:51 MarkDuplicates Tracking 399029 as yet unmatched pairs. 16401 records in RAM.
INFO 2026-06-08 09:39:53 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr11:85,717,488
INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 396495 as yet unmatched pairs. 13863 records in RAM.
INFO 2026-06-08 09:39:56 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr11:95,978,996
INFO 2026-06-08 09:39:56 MarkDuplicates Tracking 395176 as yet unmatched pairs. 12542 records in RAM.
INFO 2026-06-08 09:39:58 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr11:104,000,244
INFO 2026-06-08 09:39:58 MarkDuplicates Tracking 393661 as yet unmatched pairs. 11026 records in RAM.
INFO 2026-06-08 09:40:00 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr11:111,908,760
INFO 2026-06-08 09:40:00 MarkDuplicates Tracking 398286 as yet unmatched pairs. 15645 records in RAM.
INFO 2026-06-08 09:40:02 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr11:112,094,805
INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 391551 as yet unmatched pairs. 8907 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr11:114,255,930
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 389601 as yet unmatched pairs. 6951 records in RAM.
INFO 2026-06-08 09:40:06 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr11:117,820,667
INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 398717 as yet unmatched pairs. 16067 records in RAM.
INFO 2026-06-08 09:40:09 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr11:118,768,317
INFO 2026-06-08 09:40:09 MarkDuplicates Tracking 386984 as yet unmatched pairs. 4327 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr11:119,420,267
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 386442 as yet unmatched pairs. 3781 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr11:125,748,669
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 384100 as yet unmatched pairs. 1436 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:14,790
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 382804 as yet unmatched pairs. 44287 records in RAM.
INFO 2026-06-08 09:40:17 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr12:3,116,565
INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 381915 as yet unmatched pairs. 43391 records in RAM.
INFO 2026-06-08 09:40:19 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr12:6,036,417
INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 381162 as yet unmatched pairs. 42629 records in RAM.
INFO 2026-06-08 09:40:21 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:6,582,884
INFO 2026-06-08 09:40:21 MarkDuplicates Tracking 378757 as yet unmatched pairs. 40224 records in RAM.
INFO 2026-06-08 09:40:24 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr12:6,966,420
INFO 2026-06-08 09:40:24 MarkDuplicates Tracking 378021 as yet unmatched pairs. 39487 records in RAM.
INFO 2026-06-08 09:40:26 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr12:8,941,907
INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 375802 as yet unmatched pairs. 37258 records in RAM.
INFO 2026-06-08 09:40:28 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:11,133,578
INFO 2026-06-08 09:40:28 MarkDuplicates Tracking 374644 as yet unmatched pairs. 36092 records in RAM.
INFO 2026-06-08 09:40:30 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr12:16,357,622
INFO 2026-06-08 09:40:30 MarkDuplicates Tracking 375040 as yet unmatched pairs. 36484 records in RAM.
INFO 2026-06-08 09:40:32 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:27,635,004
INFO 2026-06-08 09:40:32 MarkDuplicates Tracking 372832 as yet unmatched pairs. 34272 records in RAM.
INFO 2026-06-08 09:40:34 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr12:40,252,910
INFO 2026-06-08 09:40:34 MarkDuplicates Tracking 370873 as yet unmatched pairs. 32302 records in RAM.
INFO 2026-06-08 09:40:36 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr12:47,798,839
INFO 2026-06-08 09:40:36 MarkDuplicates Tracking 370653 as yet unmatched pairs. 32076 records in RAM.
INFO 2026-06-08 09:40:38 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,635
INFO 2026-06-08 09:40:38 MarkDuplicates Tracking 368748 as yet unmatched pairs. 30167 records in RAM.
INFO 2026-06-08 09:40:40 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:50,925,242
INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 367265 as yet unmatched pairs. 28679 records in RAM.
INFO 2026-06-08 09:40:42 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr12:53,034,646
INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 367877 as yet unmatched pairs. 29287 records in RAM.
INFO 2026-06-08 09:40:44 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr12:53,443,548
INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 365716 as yet unmatched pairs. 27126 records in RAM.
INFO 2026-06-08 09:40:47 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr12:54,282,266
INFO 2026-06-08 09:40:47 MarkDuplicates Tracking 363999 as yet unmatched pairs. 25403 records in RAM.
INFO 2026-06-08 09:40:49 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr12:56,086,571
INFO 2026-06-08 09:40:49 MarkDuplicates Tracking 362192 as yet unmatched pairs. 23587 records in RAM.
INFO 2026-06-08 09:40:51 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:56,286,578
INFO 2026-06-08 09:40:51 MarkDuplicates Tracking 360857 as yet unmatched pairs. 22243 records in RAM.
INFO 2026-06-08 09:40:53 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr12:56,720,677
INFO 2026-06-08 09:40:53 MarkDuplicates Tracking 359546 as yet unmatched pairs. 20928 records in RAM.
INFO 2026-06-08 09:40:56 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr12:57,158,574
INFO 2026-06-08 09:40:56 MarkDuplicates Tracking 358246 as yet unmatched pairs. 19621 records in RAM.
INFO 2026-06-08 09:40:58 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr12:57,236,587
INFO 2026-06-08 09:40:58 MarkDuplicates Tracking 359898 as yet unmatched pairs. 21269 records in RAM.
INFO 2026-06-08 09:41:00 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr12:58,890,730
INFO 2026-06-08 09:41:00 MarkDuplicates Tracking 355610 as yet unmatched pairs. 16975 records in RAM.
INFO 2026-06-08 09:41:02 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr12:69,260,043
INFO 2026-06-08 09:41:02 MarkDuplicates Tracking 354152 as yet unmatched pairs. 15509 records in RAM.
INFO 2026-06-08 09:41:04 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr12:81,445,553
INFO 2026-06-08 09:41:04 MarkDuplicates Tracking 352591 as yet unmatched pairs. 13939 records in RAM.
INFO 2026-06-08 09:41:06 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr12:96,259,829
INFO 2026-06-08 09:41:06 MarkDuplicates Tracking 351652 as yet unmatched pairs. 12997 records in RAM.
INFO 2026-06-08 09:41:08 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,820
INFO 2026-06-08 09:41:08 MarkDuplicates Tracking 350209 as yet unmatched pairs. 11552 records in RAM.
INFO 2026-06-08 09:41:11 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr12:109,786,809
INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 348950 as yet unmatched pairs. 10293 records in RAM.
INFO 2026-06-08 09:41:13 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr12:112,184,499
INFO 2026-06-08 09:41:13 MarkDuplicates Tracking 347399 as yet unmatched pairs. 8739 records in RAM.
INFO 2026-06-08 09:41:15 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr12:115,991,652
INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 346202 as yet unmatched pairs. 7539 records in RAM.
INFO 2026-06-08 09:41:17 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr12:120,213,952
INFO 2026-06-08 09:41:17 MarkDuplicates Tracking 344947 as yet unmatched pairs. 6277 records in RAM.
INFO 2026-06-08 09:41:20 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr12:121,827,534
INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 343222 as yet unmatched pairs. 4545 records in RAM.
INFO 2026-06-08 09:41:22 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr12:123,937,000
INFO 2026-06-08 09:41:22 MarkDuplicates Tracking 342058 as yet unmatched pairs. 3378 records in RAM.
INFO 2026-06-08 09:41:24 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr12:130,874,721
INFO 2026-06-08 09:41:24 MarkDuplicates Tracking 340663 as yet unmatched pairs. 1969 records in RAM.
INFO 2026-06-08 09:41:26 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr12:132,954,480
INFO 2026-06-08 09:41:26 MarkDuplicates Tracking 338822 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 09:41:28 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr13:22,897,711
INFO 2026-06-08 09:41:28 MarkDuplicates Tracking 339749 as yet unmatched pairs. 15241 records in RAM.
INFO 2026-06-08 09:41:30 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr13:28,220,289
INFO 2026-06-08 09:41:30 MarkDuplicates Tracking 336359 as yet unmatched pairs. 11847 records in RAM.
INFO 2026-06-08 09:41:32 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr13:37,636,992
INFO 2026-06-08 09:41:32 MarkDuplicates Tracking 335125 as yet unmatched pairs. 10612 records in RAM.
INFO 2026-06-08 09:41:34 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr13:45,337,505
INFO 2026-06-08 09:41:34 MarkDuplicates Tracking 338351 as yet unmatched pairs. 13833 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr13:48,261,138
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 335266 as yet unmatched pairs. 10736 records in RAM.
INFO 2026-06-08 09:41:38 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr13:75,823,786
INFO 2026-06-08 09:41:38 MarkDuplicates Tracking 331618 as yet unmatched pairs. 7077 records in RAM.
INFO 2026-06-08 09:41:40 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr13:97,993,215
INFO 2026-06-08 09:41:40 MarkDuplicates Tracking 330301 as yet unmatched pairs. 5752 records in RAM.
INFO 2026-06-08 09:41:42 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr13:106,567,880
INFO 2026-06-08 09:41:42 MarkDuplicates Tracking 328951 as yet unmatched pairs. 4394 records in RAM.
INFO 2026-06-08 09:41:45 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr13:110,465,542
INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 327814 as yet unmatched pairs. 3257 records in RAM.
INFO 2026-06-08 09:41:47 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr13:112,909,227
INFO 2026-06-08 09:41:47 MarkDuplicates Tracking 326025 as yet unmatched pairs. 1456 records in RAM.
INFO 2026-06-08 09:41:49 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,413
INFO 2026-06-08 09:41:49 MarkDuplicates Tracking 324258 as yet unmatched pairs. 25170 records in RAM.
INFO 2026-06-08 09:41:51 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr14:22,905,411
INFO 2026-06-08 09:41:51 MarkDuplicates Tracking 322951 as yet unmatched pairs. 23860 records in RAM.
INFO 2026-06-08 09:41:53 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,761
INFO 2026-06-08 09:41:53 MarkDuplicates Tracking 321403 as yet unmatched pairs. 22310 records in RAM.
INFO 2026-06-08 09:41:55 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr14:30,673,934
INFO 2026-06-08 09:41:55 MarkDuplicates Tracking 319941 as yet unmatched pairs. 20838 records in RAM.
INFO 2026-06-08 09:41:57 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr14:35,403,693
INFO 2026-06-08 09:41:57 MarkDuplicates Tracking 320042 as yet unmatched pairs. 20933 records in RAM.
INFO 2026-06-08 09:41:59 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,560
INFO 2026-06-08 09:41:59 MarkDuplicates Tracking 318142 as yet unmatched pairs. 19012 records in RAM.
INFO 2026-06-08 09:42:01 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr14:55,350,598
INFO 2026-06-08 09:42:01 MarkDuplicates Tracking 316344 as yet unmatched pairs. 17194 records in RAM.
INFO 2026-06-08 09:42:03 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr14:63,941,717
INFO 2026-06-08 09:42:03 MarkDuplicates Tracking 315326 as yet unmatched pairs. 16173 records in RAM.
INFO 2026-06-08 09:42:05 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr14:64,522,046
INFO 2026-06-08 09:42:05 MarkDuplicates Tracking 314029 as yet unmatched pairs. 14876 records in RAM.
INFO 2026-06-08 09:42:07 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,252
INFO 2026-06-08 09:42:07 MarkDuplicates Tracking 313449 as yet unmatched pairs. 14289 records in RAM.
INFO 2026-06-08 09:42:10 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr14:73,287,168
INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 311339 as yet unmatched pairs. 12176 records in RAM.
INFO 2026-06-08 09:42:12 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr14:75,101,047
INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 309787 as yet unmatched pairs. 10621 records in RAM.
INFO 2026-06-08 09:42:14 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr14:88,572,734
INFO 2026-06-08 09:42:14 MarkDuplicates Tracking 308713 as yet unmatched pairs. 9539 records in RAM.
INFO 2026-06-08 09:42:16 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr14:94,062,389
INFO 2026-06-08 09:42:16 MarkDuplicates Tracking 307450 as yet unmatched pairs. 8261 records in RAM.
INFO 2026-06-08 09:42:18 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr14:99,878,494
INFO 2026-06-08 09:42:18 MarkDuplicates Tracking 305884 as yet unmatched pairs. 6667 records in RAM.
INFO 2026-06-08 09:42:20 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr14:102,922,684
INFO 2026-06-08 09:42:20 MarkDuplicates Tracking 304669 as yet unmatched pairs. 5450 records in RAM.
INFO 2026-06-08 09:42:22 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr14:104,701,382
INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 303525 as yet unmatched pairs. 4300 records in RAM.
INFO 2026-06-08 09:42:24 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr14:104,943,030
INFO 2026-06-08 09:42:24 MarkDuplicates Tracking 301334 as yet unmatched pairs. 2109 records in RAM.
INFO 2026-06-08 09:42:26 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr14:105,454,274
INFO 2026-06-08 09:42:26 MarkDuplicates Tracking 299608 as yet unmatched pairs. 382 records in RAM.
INFO 2026-06-08 09:42:28 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr15:29,718,574
INFO 2026-06-08 09:42:28 MarkDuplicates Tracking 298626 as yet unmatched pairs. 23214 records in RAM.
INFO 2026-06-08 09:42:30 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr15:34,382,874
INFO 2026-06-08 09:42:30 MarkDuplicates Tracking 297758 as yet unmatched pairs. 22338 records in RAM.
INFO 2026-06-08 09:42:32 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr15:40,853,196
INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 296478 as yet unmatched pairs. 21051 records in RAM.
INFO 2026-06-08 09:42:34 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr15:42,732,328
INFO 2026-06-08 09:42:34 MarkDuplicates Tracking 295029 as yet unmatched pairs. 19599 records in RAM.
INFO 2026-06-08 09:42:36 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr15:44,711,542
INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 295313 as yet unmatched pairs. 19877 records in RAM.
INFO 2026-06-08 09:42:38 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr15:50,182,895
INFO 2026-06-08 09:42:38 MarkDuplicates Tracking 292530 as yet unmatched pairs. 17090 records in RAM.
INFO 2026-06-08 09:42:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr15:57,253,334
INFO 2026-06-08 09:42:41 MarkDuplicates Tracking 291598 as yet unmatched pairs. 16152 records in RAM.
INFO 2026-06-08 09:42:42 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr15:62,758,582
INFO 2026-06-08 09:42:42 MarkDuplicates Tracking 289793 as yet unmatched pairs. 14345 records in RAM.
INFO 2026-06-08 09:42:45 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr15:64,675,642
INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 288350 as yet unmatched pairs. 12891 records in RAM.
INFO 2026-06-08 09:42:47 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr15:69,452,908
INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 287480 as yet unmatched pairs. 12016 records in RAM.
INFO 2026-06-08 09:42:49 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr15:72,474,704
INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 285546 as yet unmatched pairs. 10076 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr15:74,628,003
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 284234 as yet unmatched pairs. 8760 records in RAM.
INFO 2026-06-08 09:42:53 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr15:75,675,616
INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 282880 as yet unmatched pairs. 7405 records in RAM.
INFO 2026-06-08 09:42:55 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr15:78,937,417
INFO 2026-06-08 09:42:55 MarkDuplicates Tracking 281490 as yet unmatched pairs. 6013 records in RAM.
INFO 2026-06-08 09:42:57 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr15:84,839,916
INFO 2026-06-08 09:42:57 MarkDuplicates Tracking 280176 as yet unmatched pairs. 4698 records in RAM.
INFO 2026-06-08 09:42:59 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr15:89,329,021
INFO 2026-06-08 09:42:59 MarkDuplicates Tracking 279049 as yet unmatched pairs. 3565 records in RAM.
INFO 2026-06-08 09:43:01 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr15:90,638,445
INFO 2026-06-08 09:43:01 MarkDuplicates Tracking 277569 as yet unmatched pairs. 2082 records in RAM.
INFO 2026-06-08 09:43:03 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr15:99,645,723
INFO 2026-06-08 09:43:03 MarkDuplicates Tracking 276168 as yet unmatched pairs. 670 records in RAM.
INFO 2026-06-08 09:43:06 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr16:520,224
INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 274654 as yet unmatched pairs. 45104 records in RAM.
INFO 2026-06-08 09:43:08 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr16:1,208,144
INFO 2026-06-08 09:43:08 MarkDuplicates Tracking 272863 as yet unmatched pairs. 43301 records in RAM.
INFO 2026-06-08 09:43:10 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr16:1,827,697
INFO 2026-06-08 09:43:10 MarkDuplicates Tracking 271406 as yet unmatched pairs. 41843 records in RAM.
INFO 2026-06-08 09:43:12 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 2s. Last read position: chr16:2,246,858
INFO 2026-06-08 09:43:12 MarkDuplicates Tracking 269707 as yet unmatched pairs. 40136 records in RAM.
INFO 2026-06-08 09:43:14 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,161
INFO 2026-06-08 09:43:14 MarkDuplicates Tracking 268872 as yet unmatched pairs. 39297 records in RAM.
INFO 2026-06-08 09:43:16 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr16:3,069,287
INFO 2026-06-08 09:43:16 MarkDuplicates Tracking 267281 as yet unmatched pairs. 37706 records in RAM.
INFO 2026-06-08 09:43:18 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr16:4,441,475
INFO 2026-06-08 09:43:18 MarkDuplicates Tracking 265166 as yet unmatched pairs. 35591 records in RAM.
INFO 2026-06-08 09:43:20 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr16:11,042,302
INFO 2026-06-08 09:43:20 MarkDuplicates Tracking 263773 as yet unmatched pairs. 34185 records in RAM.
INFO 2026-06-08 09:43:22 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr16:14,865,054
INFO 2026-06-08 09:43:22 MarkDuplicates Tracking 262760 as yet unmatched pairs. 33171 records in RAM.
INFO 2026-06-08 09:43:24 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,533
INFO 2026-06-08 09:43:24 MarkDuplicates Tracking 262107 as yet unmatched pairs. 32518 records in RAM.
INFO 2026-06-08 09:43:26 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr16:16,322,683
INFO 2026-06-08 09:43:26 MarkDuplicates Tracking 261274 as yet unmatched pairs. 31684 records in RAM.
INFO 2026-06-08 09:43:27 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr16:18,339,613
INFO 2026-06-08 09:43:27 MarkDuplicates Tracking 261039 as yet unmatched pairs. 31449 records in RAM.
INFO 2026-06-08 09:43:29 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr16:18,500,502
INFO 2026-06-08 09:43:29 MarkDuplicates Tracking 260359 as yet unmatched pairs. 30769 records in RAM.
INFO 2026-06-08 09:43:31 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr16:20,471,648
INFO 2026-06-08 09:43:31 MarkDuplicates Tracking 259907 as yet unmatched pairs. 30317 records in RAM.
INFO 2026-06-08 09:43:33 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr16:21,406,375
INFO 2026-06-08 09:43:33 MarkDuplicates Tracking 258786 as yet unmatched pairs. 29193 records in RAM.
INFO 2026-06-08 09:43:34 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr16:21,908,466
INFO 2026-06-08 09:43:34 MarkDuplicates Tracking 257597 as yet unmatched pairs. 28003 records in RAM.
INFO 2026-06-08 09:43:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,293
INFO 2026-06-08 09:43:36 MarkDuplicates Tracking 257148 as yet unmatched pairs. 27551 records in RAM.
INFO 2026-06-08 09:43:38 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr16:28,390,946
INFO 2026-06-08 09:43:38 MarkDuplicates Tracking 255898 as yet unmatched pairs. 26301 records in RAM.
INFO 2026-06-08 09:43:40 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 2s. Last read position: chr16:28,975,290
INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 254899 as yet unmatched pairs. 25301 records in RAM.
INFO 2026-06-08 09:43:42 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr16:29,805,005
INFO 2026-06-08 09:43:42 MarkDuplicates Tracking 254518 as yet unmatched pairs. 24915 records in RAM.
INFO 2026-06-08 09:43:44 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 2s. Last read position: chr16:30,067,270
INFO 2026-06-08 09:43:44 MarkDuplicates Tracking 254269 as yet unmatched pairs. 24664 records in RAM.
INFO 2026-06-08 09:43:46 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,746
INFO 2026-06-08 09:43:46 MarkDuplicates Tracking 251555 as yet unmatched pairs. 21949 records in RAM.
INFO 2026-06-08 09:43:48 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 2s. Last read position: chr16:30,737,289
INFO 2026-06-08 09:43:48 MarkDuplicates Tracking 250531 as yet unmatched pairs. 20922 records in RAM.
INFO 2026-06-08 09:43:50 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,225
INFO 2026-06-08 09:43:50 MarkDuplicates Tracking 249005 as yet unmatched pairs. 19391 records in RAM.
INFO 2026-06-08 09:43:52 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 2s. Last read position: chr16:48,560,981
INFO 2026-06-08 09:43:52 MarkDuplicates Tracking 247598 as yet unmatched pairs. 17981 records in RAM.
INFO 2026-06-08 09:43:54 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr16:54,285,312
INFO 2026-06-08 09:43:54 MarkDuplicates Tracking 246332 as yet unmatched pairs. 16713 records in RAM.
INFO 2026-06-08 09:43:56 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr16:57,650,289
INFO 2026-06-08 09:43:56 MarkDuplicates Tracking 245949 as yet unmatched pairs. 16320 records in RAM.
INFO 2026-06-08 09:43:58 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr16:66,734,302
INFO 2026-06-08 09:43:58 MarkDuplicates Tracking 243466 as yet unmatched pairs. 13825 records in RAM.
INFO 2026-06-08 09:44:00 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr16:67,168,915
INFO 2026-06-08 09:44:00 MarkDuplicates Tracking 242561 as yet unmatched pairs. 12911 records in RAM.
INFO 2026-06-08 09:44:02 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr16:67,909,477
INFO 2026-06-08 09:44:02 MarkDuplicates Tracking 240218 as yet unmatched pairs. 10564 records in RAM.
INFO 2026-06-08 09:44:04 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr16:69,757,633
INFO 2026-06-08 09:44:04 MarkDuplicates Tracking 238795 as yet unmatched pairs. 9132 records in RAM.
INFO 2026-06-08 09:44:06 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr16:70,664,175
INFO 2026-06-08 09:44:06 MarkDuplicates Tracking 238028 as yet unmatched pairs. 8357 records in RAM.
INFO 2026-06-08 09:44:08 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr16:74,474,618
INFO 2026-06-08 09:44:08 MarkDuplicates Tracking 236697 as yet unmatched pairs. 7018 records in RAM.
INFO 2026-06-08 09:44:10 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr16:81,652,262
INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 235260 as yet unmatched pairs. 5576 records in RAM.
INFO 2026-06-08 09:44:13 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr16:87,402,953
INFO 2026-06-08 09:44:13 MarkDuplicates Tracking 233633 as yet unmatched pairs. 3940 records in RAM.
INFO 2026-06-08 09:44:15 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr16:89,100,726
INFO 2026-06-08 09:44:15 MarkDuplicates Tracking 232017 as yet unmatched pairs. 2318 records in RAM.
INFO 2026-06-08 09:44:17 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr16:89,738,893
INFO 2026-06-08 09:44:17 MarkDuplicates Tracking 230276 as yet unmatched pairs. 574 records in RAM.
INFO 2026-06-08 09:44:19 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,933
INFO 2026-06-08 09:44:19 MarkDuplicates Tracking 234511 as yet unmatched pairs. 72367 records in RAM.
INFO 2026-06-08 09:44:22 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 2s. Last read position: chr17:1,681,870
INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 227843 as yet unmatched pairs. 65699 records in RAM.
INFO 2026-06-08 09:44:24 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr17:2,394,045
INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 225842 as yet unmatched pairs. 63698 records in RAM.
INFO 2026-06-08 09:44:26 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr17:4,499,095
INFO 2026-06-08 09:44:26 MarkDuplicates Tracking 224604 as yet unmatched pairs. 62460 records in RAM.
INFO 2026-06-08 09:44:28 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 2s. Last read position: chr17:4,946,742
INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 224238 as yet unmatched pairs. 62094 records in RAM.
INFO 2026-06-08 09:44:30 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 2s. Last read position: chr17:7,220,922
INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 222483 as yet unmatched pairs. 60338 records in RAM.
INFO 2026-06-08 09:44:32 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 2s. Last read position: chr17:7,417,440
INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 220076 as yet unmatched pairs. 57927 records in RAM.
INFO 2026-06-08 09:44:35 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr17:7,574,667
INFO 2026-06-08 09:44:35 MarkDuplicates Tracking 218987 as yet unmatched pairs. 56838 records in RAM.
INFO 2026-06-08 09:44:37 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:7,949,385
INFO 2026-06-08 09:44:37 MarkDuplicates Tracking 217523 as yet unmatched pairs. 55371 records in RAM.
INFO 2026-06-08 09:44:39 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 2s. Last read position: chr17:8,487,501
INFO 2026-06-08 09:44:39 MarkDuplicates Tracking 216037 as yet unmatched pairs. 53881 records in RAM.
INFO 2026-06-08 09:44:41 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 2s. Last read position: chr17:16,382,015
INFO 2026-06-08 09:44:41 MarkDuplicates Tracking 217806 as yet unmatched pairs. 55650 records in RAM.
INFO 2026-06-08 09:44:43 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:17,882,771
INFO 2026-06-08 09:44:43 MarkDuplicates Tracking 213482 as yet unmatched pairs. 51325 records in RAM.
INFO 2026-06-08 09:44:45 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr17:18,877,728
INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 212129 as yet unmatched pairs. 49969 records in RAM.
INFO 2026-06-08 09:44:47 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:19,652,555
INFO 2026-06-08 09:44:47 MarkDuplicates Tracking 212142 as yet unmatched pairs. 49977 records in RAM.
INFO 2026-06-08 09:44:49 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:28,552,365
INFO 2026-06-08 09:44:49 MarkDuplicates Tracking 208997 as yet unmatched pairs. 46832 records in RAM.
INFO 2026-06-08 09:47:13 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 144s. Last read position: chr17:29,044,948
INFO 2026-06-08 09:47:13 MarkDuplicates Tracking 207576 as yet unmatched pairs. 45411 records in RAM.
INFO 2026-06-08 09:47:15 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:31,260,375
INFO 2026-06-08 09:47:15 MarkDuplicates Tracking 206404 as yet unmatched pairs. 44239 records in RAM.
INFO 2026-06-08 09:47:18 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr17:35,671,779
INFO 2026-06-08 09:47:18 MarkDuplicates Tracking 205498 as yet unmatched pairs. 43328 records in RAM.
INFO 2026-06-08 09:47:20 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 2s. Last read position: chr17:37,512,778
INFO 2026-06-08 09:47:20 MarkDuplicates Tracking 203940 as yet unmatched pairs. 41764 records in RAM.
INFO 2026-06-08 09:47:21 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr17:38,713,096
INFO 2026-06-08 09:47:21 MarkDuplicates Tracking 203319 as yet unmatched pairs. 41142 records in RAM.
INFO 2026-06-08 09:47:24 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr17:39,410,466
INFO 2026-06-08 09:47:24 MarkDuplicates Tracking 201901 as yet unmatched pairs. 39715 records in RAM.
INFO 2026-06-08 09:47:26 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,443
INFO 2026-06-08 09:47:26 MarkDuplicates Tracking 202562 as yet unmatched pairs. 40376 records in RAM.
INFO 2026-06-08 09:47:28 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr17:40,164,137
INFO 2026-06-08 09:47:28 MarkDuplicates Tracking 199109 as yet unmatched pairs. 36923 records in RAM.
INFO 2026-06-08 09:47:30 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr17:41,867,829
INFO 2026-06-08 09:47:30 MarkDuplicates Tracking 198611 as yet unmatched pairs. 36422 records in RAM.
INFO 2026-06-08 09:47:32 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr17:42,218,750
INFO 2026-06-08 09:47:32 MarkDuplicates Tracking 196255 as yet unmatched pairs. 34064 records in RAM.
INFO 2026-06-08 09:47:34 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr17:42,795,003
INFO 2026-06-08 09:47:34 MarkDuplicates Tracking 194602 as yet unmatched pairs. 32411 records in RAM.
INFO 2026-06-08 09:47:36 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,807
INFO 2026-06-08 09:47:36 MarkDuplicates Tracking 193274 as yet unmatched pairs. 31080 records in RAM.
INFO 2026-06-08 09:47:38 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr17:45,237,621
INFO 2026-06-08 09:47:38 MarkDuplicates Tracking 191585 as yet unmatched pairs. 29389 records in RAM.
INFO 2026-06-08 09:47:40 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr17:47,018,963
INFO 2026-06-08 09:47:40 MarkDuplicates Tracking 190619 as yet unmatched pairs. 28420 records in RAM.
INFO 2026-06-08 09:47:42 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr17:48,058,468
INFO 2026-06-08 09:47:42 MarkDuplicates Tracking 189913 as yet unmatched pairs. 27712 records in RAM.
INFO 2026-06-08 09:47:45 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,106,849
INFO 2026-06-08 09:47:45 MarkDuplicates Tracking 188718 as yet unmatched pairs. 26507 records in RAM.
INFO 2026-06-08 09:47:47 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,667,553
INFO 2026-06-08 09:47:47 MarkDuplicates Tracking 188178 as yet unmatched pairs. 25966 records in RAM.
INFO 2026-06-08 09:47:49 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr17:55,159,805
INFO 2026-06-08 09:47:49 MarkDuplicates Tracking 184910 as yet unmatched pairs. 22695 records in RAM.
INFO 2026-06-08 09:47:51 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr17:59,648,255
INFO 2026-06-08 09:47:51 MarkDuplicates Tracking 184523 as yet unmatched pairs. 22307 records in RAM.
INFO 2026-06-08 09:47:53 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr17:60,255,202
INFO 2026-06-08 09:47:53 MarkDuplicates Tracking 182392 as yet unmatched pairs. 20168 records in RAM.
INFO 2026-06-08 09:47:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: chr17:63,941,088
INFO 2026-06-08 09:47:55 MarkDuplicates Tracking 180856 as yet unmatched pairs. 18631 records in RAM.
INFO 2026-06-08 09:47:57 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr17:67,178,783
INFO 2026-06-08 09:47:57 MarkDuplicates Tracking 179834 as yet unmatched pairs. 17607 records in RAM.
INFO 2026-06-08 09:47:59 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 2s. Last read position: chr17:69,106,041
INFO 2026-06-08 09:47:59 MarkDuplicates Tracking 178557 as yet unmatched pairs. 16330 records in RAM.
INFO 2026-06-08 09:48:01 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr17:74,775,656
INFO 2026-06-08 09:48:01 MarkDuplicates Tracking 177026 as yet unmatched pairs. 14795 records in RAM.
INFO 2026-06-08 09:48:03 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr17:75,591,694
INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 175757 as yet unmatched pairs. 13525 records in RAM.
INFO 2026-06-08 09:48:05 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr17:75,818,694
INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 174218 as yet unmatched pairs. 11976 records in RAM.
INFO 2026-06-08 09:48:07 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr17:76,688,166
INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 172734 as yet unmatched pairs. 10492 records in RAM.
INFO 2026-06-08 09:48:10 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr17:78,807,140
INFO 2026-06-08 09:48:10 MarkDuplicates Tracking 171164 as yet unmatched pairs. 8922 records in RAM.
INFO 2026-06-08 09:48:11 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr17:80,288,113
INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 171969 as yet unmatched pairs. 9722 records in RAM.
INFO 2026-06-08 09:48:14 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr17:80,372,717
INFO 2026-06-08 09:48:14 MarkDuplicates Tracking 169407 as yet unmatched pairs. 7158 records in RAM.
INFO 2026-06-08 09:48:16 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chr17:81,512,128
INFO 2026-06-08 09:48:16 MarkDuplicates Tracking 167545 as yet unmatched pairs. 5292 records in RAM.
INFO 2026-06-08 09:48:18 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,783
INFO 2026-06-08 09:48:18 MarkDuplicates Tracking 165625 as yet unmatched pairs. 3371 records in RAM.
INFO 2026-06-08 09:48:20 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr17:82,238,745
INFO 2026-06-08 09:48:20 MarkDuplicates Tracking 164394 as yet unmatched pairs. 2137 records in RAM.
INFO 2026-06-08 09:48:22 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr18:2,907,031
INFO 2026-06-08 09:48:22 MarkDuplicates Tracking 161914 as yet unmatched pairs. 10374 records in RAM.
INFO 2026-06-08 09:48:24 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chr18:9,102,776
INFO 2026-06-08 09:48:24 MarkDuplicates Tracking 160700 as yet unmatched pairs. 9157 records in RAM.
INFO 2026-06-08 09:48:26 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 2s. Last read position: chr18:22,992,884
INFO 2026-06-08 09:48:26 MarkDuplicates Tracking 159186 as yet unmatched pairs. 7639 records in RAM.
INFO 2026-06-08 09:48:28 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr18:35,263,522
INFO 2026-06-08 09:48:28 MarkDuplicates Tracking 157930 as yet unmatched pairs. 6382 records in RAM.
INFO 2026-06-08 09:48:31 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr18:49,490,803
INFO 2026-06-08 09:48:31 MarkDuplicates Tracking 158527 as yet unmatched pairs. 6977 records in RAM.
INFO 2026-06-08 09:48:33 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr18:58,536,587
INFO 2026-06-08 09:48:33 MarkDuplicates Tracking 155653 as yet unmatched pairs. 4103 records in RAM.
INFO 2026-06-08 09:48:35 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr18:63,318,424
INFO 2026-06-08 09:48:35 MarkDuplicates Tracking 157027 as yet unmatched pairs. 5469 records in RAM.
INFO 2026-06-08 09:48:37 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr18:76,441,814
INFO 2026-06-08 09:48:37 MarkDuplicates Tracking 152111 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 09:48:39 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr19:804,293
INFO 2026-06-08 09:48:39 MarkDuplicates Tracking 150661 as yet unmatched pairs. 63247 records in RAM.
INFO 2026-06-08 09:48:42 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr19:1,221,805
INFO 2026-06-08 09:48:42 MarkDuplicates Tracking 148828 as yet unmatched pairs. 61414 records in RAM.
INFO 2026-06-08 09:48:44 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chr19:1,817,227
INFO 2026-06-08 09:48:44 MarkDuplicates Tracking 147215 as yet unmatched pairs. 59798 records in RAM.
INFO 2026-06-08 09:48:46 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr19:2,757,334
INFO 2026-06-08 09:48:46 MarkDuplicates Tracking 145551 as yet unmatched pairs. 58129 records in RAM.
INFO 2026-06-08 09:48:48 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr19:4,097,302
INFO 2026-06-08 09:48:48 MarkDuplicates Tracking 144352 as yet unmatched pairs. 56928 records in RAM.
INFO 2026-06-08 09:48:50 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 2s. Last read position: chr19:5,206,826
INFO 2026-06-08 09:48:50 MarkDuplicates Tracking 142240 as yet unmatched pairs. 54815 records in RAM.
INFO 2026-06-08 09:48:53 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr19:6,213,736
INFO 2026-06-08 09:48:53 MarkDuplicates Tracking 140402 as yet unmatched pairs. 52976 records in RAM.
INFO 2026-06-08 09:48:55 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 2s. Last read position: chr19:6,720,518
INFO 2026-06-08 09:48:55 MarkDuplicates Tracking 138826 as yet unmatched pairs. 51400 records in RAM.
INFO 2026-06-08 09:48:57 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 2s. Last read position: chr19:7,559,042
INFO 2026-06-08 09:48:57 MarkDuplicates Tracking 137378 as yet unmatched pairs. 49952 records in RAM.
INFO 2026-06-08 09:48:59 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chr19:8,371,140
INFO 2026-06-08 09:48:59 MarkDuplicates Tracking 139248 as yet unmatched pairs. 51822 records in RAM.
INFO 2026-06-08 09:49:01 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr19:10,140,266
INFO 2026-06-08 09:49:01 MarkDuplicates Tracking 134055 as yet unmatched pairs. 46629 records in RAM.
INFO 2026-06-08 09:49:03 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr19:10,830,236
INFO 2026-06-08 09:49:03 MarkDuplicates Tracking 133077 as yet unmatched pairs. 45646 records in RAM.
INFO 2026-06-08 09:49:05 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr19:11,442,505
INFO 2026-06-08 09:49:05 MarkDuplicates Tracking 131504 as yet unmatched pairs. 44073 records in RAM.
INFO 2026-06-08 09:49:07 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr19:12,800,288
INFO 2026-06-08 09:49:07 MarkDuplicates Tracking 129857 as yet unmatched pairs. 42426 records in RAM.
INFO 2026-06-08 09:49:10 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chr19:14,151,131
INFO 2026-06-08 09:49:10 MarkDuplicates Tracking 127872 as yet unmatched pairs. 40439 records in RAM.
INFO 2026-06-08 09:49:12 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr19:15,174,112
INFO 2026-06-08 09:49:12 MarkDuplicates Tracking 127080 as yet unmatched pairs. 39646 records in RAM.
INFO 2026-06-08 09:49:14 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr19:15,372,194
INFO 2026-06-08 09:49:14 MarkDuplicates Tracking 124620 as yet unmatched pairs. 37185 records in RAM.
INFO 2026-06-08 09:49:16 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,433
INFO 2026-06-08 09:49:16 MarkDuplicates Tracking 122988 as yet unmatched pairs. 35552 records in RAM.
INFO 2026-06-08 09:49:18 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr19:17,861,339
INFO 2026-06-08 09:49:18 MarkDuplicates Tracking 122345 as yet unmatched pairs. 34906 records in RAM.
INFO 2026-06-08 09:49:20 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 2s. Last read position: chr19:18,539,582
INFO 2026-06-08 09:49:20 MarkDuplicates Tracking 119984 as yet unmatched pairs. 32545 records in RAM.
INFO 2026-06-08 09:49:22 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr19:19,634,024
INFO 2026-06-08 09:49:22 MarkDuplicates Tracking 118008 as yet unmatched pairs. 30569 records in RAM.
INFO 2026-06-08 09:49:24 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr19:34,365,296
INFO 2026-06-08 09:49:24 MarkDuplicates Tracking 118177 as yet unmatched pairs. 30735 records in RAM.
INFO 2026-06-08 09:49:26 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chr19:35,278,960
INFO 2026-06-08 09:49:26 MarkDuplicates Tracking 115150 as yet unmatched pairs. 27704 records in RAM.
INFO 2026-06-08 09:49:28 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr19:37,289,220
INFO 2026-06-08 09:49:28 MarkDuplicates Tracking 113237 as yet unmatched pairs. 25791 records in RAM.
INFO 2026-06-08 09:49:31 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr19:38,815,931
INFO 2026-06-08 09:49:31 MarkDuplicates Tracking 113404 as yet unmatched pairs. 25958 records in RAM.
INFO 2026-06-08 09:49:33 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,296
INFO 2026-06-08 09:49:33 MarkDuplicates Tracking 111909 as yet unmatched pairs. 24461 records in RAM.
INFO 2026-06-08 09:49:35 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr19:40,236,286
INFO 2026-06-08 09:49:35 MarkDuplicates Tracking 109422 as yet unmatched pairs. 21974 records in RAM.
INFO 2026-06-08 09:49:37 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chr19:41,344,846
INFO 2026-06-08 09:49:37 MarkDuplicates Tracking 107564 as yet unmatched pairs. 20115 records in RAM.
INFO 2026-06-08 09:49:39 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr19:42,274,561
INFO 2026-06-08 09:49:39 MarkDuplicates Tracking 106453 as yet unmatched pairs. 19002 records in RAM.
INFO 2026-06-08 09:49:41 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chr19:44,213,115
INFO 2026-06-08 09:49:41 MarkDuplicates Tracking 104446 as yet unmatched pairs. 16975 records in RAM.
INFO 2026-06-08 09:49:43 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chr19:45,408,397
INFO 2026-06-08 09:49:43 MarkDuplicates Tracking 102750 as yet unmatched pairs. 15270 records in RAM.
INFO 2026-06-08 09:49:45 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 2s. Last read position: chr19:46,736,822
INFO 2026-06-08 09:49:45 MarkDuplicates Tracking 100915 as yet unmatched pairs. 13433 records in RAM.
INFO 2026-06-08 09:49:47 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr19:47,754,551
INFO 2026-06-08 09:49:47 MarkDuplicates Tracking 100731 as yet unmatched pairs. 13246 records in RAM.
INFO 2026-06-08 09:49:49 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr19:48,913,128
INFO 2026-06-08 09:49:49 MarkDuplicates Tracking 98167 as yet unmatched pairs. 10678 records in RAM.
INFO 2026-06-08 09:49:51 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chr19:49,499,572
INFO 2026-06-08 09:49:51 MarkDuplicates Tracking 96264 as yet unmatched pairs. 8775 records in RAM.
INFO 2026-06-08 09:49:53 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,858,443
INFO 2026-06-08 09:49:53 MarkDuplicates Tracking 95012 as yet unmatched pairs. 7517 records in RAM.
INFO 2026-06-08 09:49:55 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chr19:52,212,755
INFO 2026-06-08 09:49:55 MarkDuplicates Tracking 94093 as yet unmatched pairs. 6598 records in RAM.
INFO 2026-06-08 09:49:57 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 2s. Last read position: chr19:54,191,777
INFO 2026-06-08 09:49:57 MarkDuplicates Tracking 92049 as yet unmatched pairs. 4551 records in RAM.
INFO 2026-06-08 09:49:59 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 1s. Last read position: chr19:55,455,260
INFO 2026-06-08 09:49:59 MarkDuplicates Tracking 90777 as yet unmatched pairs. 3279 records in RAM.
INFO 2026-06-08 09:50:01 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 2s. Last read position: chr19:57,808,739
INFO 2026-06-08 09:50:01 MarkDuplicates Tracking 88857 as yet unmatched pairs. 1357 records in RAM.
INFO 2026-06-08 09:50:03 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 2s. Last read position: chr20:419,387
INFO 2026-06-08 09:50:03 MarkDuplicates Tracking 87554 as yet unmatched pairs. 20014 records in RAM.
INFO 2026-06-08 09:50:05 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 2s. Last read position: chr20:3,694,343
INFO 2026-06-08 09:50:05 MarkDuplicates Tracking 85870 as yet unmatched pairs. 18330 records in RAM.
INFO 2026-06-08 09:50:08 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr20:10,658,678
INFO 2026-06-08 09:50:08 MarkDuplicates Tracking 84732 as yet unmatched pairs. 17190 records in RAM.
INFO 2026-06-08 09:50:09 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 1s. Last read position: chr20:21,755,301
INFO 2026-06-08 09:50:09 MarkDuplicates Tracking 83034 as yet unmatched pairs. 15491 records in RAM.
INFO 2026-06-08 09:50:12 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr20:32,434,690
INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 81808 as yet unmatched pairs. 14261 records in RAM.
INFO 2026-06-08 09:50:13 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 1s. Last read position: chr20:35,277,865
INFO 2026-06-08 09:50:13 MarkDuplicates Tracking 80127 as yet unmatched pairs. 12579 records in RAM.
INFO 2026-06-08 09:50:16 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 2s. Last read position: chr20:36,793,762
INFO 2026-06-08 09:50:16 MarkDuplicates Tracking 78651 as yet unmatched pairs. 11102 records in RAM.
INFO 2026-06-08 09:50:18 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 1s. Last read position: chr20:41,354,698
INFO 2026-06-08 09:50:18 MarkDuplicates Tracking 77617 as yet unmatched pairs. 10068 records in RAM.
INFO 2026-06-08 09:50:20 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 2s. Last read position: chr20:45,834,405
INFO 2026-06-08 09:50:20 MarkDuplicates Tracking 75796 as yet unmatched pairs. 8245 records in RAM.
INFO 2026-06-08 09:50:22 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr20:49,238,986
INFO 2026-06-08 09:50:22 MarkDuplicates Tracking 74363 as yet unmatched pairs. 6810 records in RAM.
INFO 2026-06-08 09:50:24 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: chr20:57,565,372
INFO 2026-06-08 09:50:24 MarkDuplicates Tracking 73160 as yet unmatched pairs. 5606 records in RAM.
INFO 2026-06-08 09:50:26 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chr20:62,318,513
INFO 2026-06-08 09:50:26 MarkDuplicates Tracking 71990 as yet unmatched pairs. 4431 records in RAM.
INFO 2026-06-08 09:50:28 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 2s. Last read position: chr20:62,905,536
INFO 2026-06-08 09:50:28 MarkDuplicates Tracking 69781 as yet unmatched pairs. 2219 records in RAM.
INFO 2026-06-08 09:50:30 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: chr20:64,016,753
INFO 2026-06-08 09:50:30 MarkDuplicates Tracking 68109 as yet unmatched pairs. 547 records in RAM.
INFO 2026-06-08 09:50:32 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,923
INFO 2026-06-08 09:50:32 MarkDuplicates Tracking 66841 as yet unmatched pairs. 11531 records in RAM.
INFO 2026-06-08 09:50:33 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-08 09:50:33 MarkDuplicates Tracking 66252 as yet unmatched pairs. 10939 records in RAM.
INFO 2026-06-08 09:50:35 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,260
INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 65613 as yet unmatched pairs. 10296 records in RAM.
INFO 2026-06-08 09:50:37 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 1s. Last read position: chr21:26,000,054
INFO 2026-06-08 09:50:37 MarkDuplicates Tracking 64617 as yet unmatched pairs. 9299 records in RAM.
INFO 2026-06-08 09:50:38 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 1s. Last read position: chr21:33,521,032
INFO 2026-06-08 09:50:38 MarkDuplicates Tracking 62595 as yet unmatched pairs. 7273 records in RAM.
INFO 2026-06-08 09:50:40 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 1s. Last read position: chr21:38,299,661
INFO 2026-06-08 09:50:40 MarkDuplicates Tracking 62081 as yet unmatched pairs. 6759 records in RAM.
INFO 2026-06-08 09:50:42 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 1s. Last read position: chr21:43,981,124
INFO 2026-06-08 09:50:42 MarkDuplicates Tracking 60261 as yet unmatched pairs. 4937 records in RAM.
INFO 2026-06-08 09:50:44 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chr21:45,468,526
INFO 2026-06-08 09:50:44 MarkDuplicates Tracking 59449 as yet unmatched pairs. 4124 records in RAM.
INFO 2026-06-08 09:50:46 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 1s. Last read position: chr21:46,112,495
INFO 2026-06-08 09:50:46 MarkDuplicates Tracking 56543 as yet unmatched pairs. 1218 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 2s. Last read position: chr22:17,871,854
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 54882 as yet unmatched pairs. 25886 records in RAM.
INFO 2026-06-08 09:50:51 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 1s. Last read position: chr22:20,116,282
INFO 2026-06-08 09:50:51 MarkDuplicates Tracking 53412 as yet unmatched pairs. 24416 records in RAM.
INFO 2026-06-08 09:50:53 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 1s. Last read position: chr22:22,647,206
INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 52166 as yet unmatched pairs. 23170 records in RAM.
INFO 2026-06-08 09:50:55 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr22:24,062,995
INFO 2026-06-08 09:50:55 MarkDuplicates Tracking 50412 as yet unmatched pairs. 21416 records in RAM.
INFO 2026-06-08 09:50:57 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr22:24,645,635
INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 48869 as yet unmatched pairs. 19873 records in RAM.
INFO 2026-06-08 09:50:59 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 1s. Last read position: chr22:29,282,522
INFO 2026-06-08 09:50:59 MarkDuplicates Tracking 49202 as yet unmatched pairs. 20205 records in RAM.
INFO 2026-06-08 09:51:01 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 2s. Last read position: chr22:30,415,959
INFO 2026-06-08 09:51:01 MarkDuplicates Tracking 46028 as yet unmatched pairs. 17031 records in RAM.
INFO 2026-06-08 09:51:03 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 1s. Last read position: chr22:31,620,602
INFO 2026-06-08 09:51:03 MarkDuplicates Tracking 44756 as yet unmatched pairs. 15759 records in RAM.
INFO 2026-06-08 09:51:05 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 2s. Last read position: chr22:36,265,476
INFO 2026-06-08 09:51:05 MarkDuplicates Tracking 43894 as yet unmatched pairs. 14896 records in RAM.
INFO 2026-06-08 09:51:07 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 2s. Last read position: chr22:37,206,287
INFO 2026-06-08 09:51:07 MarkDuplicates Tracking 41653 as yet unmatched pairs. 12655 records in RAM.
INFO 2026-06-08 09:51:09 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 1s. Last read position: chr22:38,486,113
INFO 2026-06-08 09:51:09 MarkDuplicates Tracking 41007 as yet unmatched pairs. 12005 records in RAM.
INFO 2026-06-08 09:51:11 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 2s. Last read position: chr22:39,529,906
INFO 2026-06-08 09:51:11 MarkDuplicates Tracking 38866 as yet unmatched pairs. 9864 records in RAM.
INFO 2026-06-08 09:51:13 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 2s. Last read position: chr22:41,508,037
INFO 2026-06-08 09:51:13 MarkDuplicates Tracking 37567 as yet unmatched pairs. 8563 records in RAM.
INFO 2026-06-08 09:51:15 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:00s. Time for last 1,000,000: 1s. Last read position: chr22:42,636,758
INFO 2026-06-08 09:51:15 MarkDuplicates Tracking 36096 as yet unmatched pairs. 7092 records in RAM.
INFO 2026-06-08 09:51:17 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 2s. Last read position: chr22:46,762,820
INFO 2026-06-08 09:51:17 MarkDuplicates Tracking 34941 as yet unmatched pairs. 5937 records in RAM.
INFO 2026-06-08 09:51:19 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 1s. Last read position: chr22:50,285,994
INFO 2026-06-08 09:51:19 MarkDuplicates Tracking 33042 as yet unmatched pairs. 4038 records in RAM.
INFO 2026-06-08 09:51:21 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chr22:50,529,517
INFO 2026-06-08 09:51:21 MarkDuplicates Tracking 31198 as yet unmatched pairs. 2189 records in RAM.
INFO 2026-06-08 09:51:24 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chrX:1,391,921
INFO 2026-06-08 09:51:24 MarkDuplicates Tracking 29675 as yet unmatched pairs. 20781 records in RAM.
INFO 2026-06-08 09:51:25 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 1s. Last read position: chrX:12,820,757
INFO 2026-06-08 09:51:25 MarkDuplicates Tracking 27235 as yet unmatched pairs. 18341 records in RAM.
INFO 2026-06-08 09:51:28 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 2s. Last read position: chrX:19,013,998
INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 25868 as yet unmatched pairs. 16952 records in RAM.
INFO 2026-06-08 09:51:30 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 1s. Last read position: chrX:41,165,967
INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 24935 as yet unmatched pairs. 16019 records in RAM.
INFO 2026-06-08 09:51:32 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chrX:47,585,646
INFO 2026-06-08 09:51:32 MarkDuplicates Tracking 23686 as yet unmatched pairs. 14769 records in RAM.
INFO 2026-06-08 09:51:34 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 2s. Last read position: chrX:49,076,471
INFO 2026-06-08 09:51:34 MarkDuplicates Tracking 22154 as yet unmatched pairs. 13237 records in RAM.
INFO 2026-06-08 09:51:36 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:24:20s. Time for last 1,000,000: 1s. Last read position: chrX:53,592,502
INFO 2026-06-08 09:51:36 MarkDuplicates Tracking 20855 as yet unmatched pairs. 11937 records in RAM.
INFO 2026-06-08 09:51:38 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chrX:67,711,557
INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 19437 as yet unmatched pairs. 10518 records in RAM.
INFO 2026-06-08 09:51:40 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 1s. Last read position: chrX:72,262,748
INFO 2026-06-08 09:51:40 MarkDuplicates Tracking 17869 as yet unmatched pairs. 8950 records in RAM.
INFO 2026-06-08 09:51:42 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:24:27s. Time for last 1,000,000: 2s. Last read position: chrX:78,125,795
INFO 2026-06-08 09:51:42 MarkDuplicates Tracking 17997 as yet unmatched pairs. 9078 records in RAM.
INFO 2026-06-08 09:51:44 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 2s. Last read position: chrX:106,928,716
INFO 2026-06-08 09:51:44 MarkDuplicates Tracking 16819 as yet unmatched pairs. 7900 records in RAM.
INFO 2026-06-08 09:51:46 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:24:31s. Time for last 1,000,000: 1s. Last read position: chrX:120,627,056
INFO 2026-06-08 09:51:46 MarkDuplicates Tracking 14401 as yet unmatched pairs. 5482 records in RAM.
INFO 2026-06-08 09:51:48 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:24:33s. Time for last 1,000,000: 2s. Last read position: chrX:139,782,688
INFO 2026-06-08 09:51:48 MarkDuplicates Tracking 13269 as yet unmatched pairs. 4350 records in RAM.
INFO 2026-06-08 09:51:50 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 1s. Last read position: chrX:153,787,093
INFO 2026-06-08 09:51:50 MarkDuplicates Tracking 12064 as yet unmatched pairs. 3141 records in RAM.
INFO 2026-06-08 09:51:52 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 2s. Last read position: chrX:154,367,534
INFO 2026-06-08 09:51:52 MarkDuplicates Tracking 11125 as yet unmatched pairs. 2202 records in RAM.
INFO 2026-06-08 09:51:54 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 1s. Last read position: chrX:155,383,113
INFO 2026-06-08 09:51:54 MarkDuplicates Tracking 8971 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 09:51:56 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chrM:11,269
INFO 2026-06-08 09:51:56 MarkDuplicates Tracking 8151 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 09:51:58 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:24:42s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,932
INFO 2026-06-08 09:51:58 MarkDuplicates Tracking 5547 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:51:59 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 1s. Last read position: KI270711.1:29,392
INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 5432 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:52:01 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,661
INFO 2026-06-08 09:52:01 MarkDuplicates Tracking 623 as yet unmatched pairs. 547 records in RAM.
INFO 2026-06-08 09:52:02 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:24:47s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,781
INFO 2026-06-08 09:52:02 MarkDuplicates Tracking 76 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 09:52:02 MarkDuplicates Read 640112539 records. 0 pairs never matched.
INFO 2026-06-08 09:52:46 MarkDuplicates After buildSortedReadEndLists freeMemory: 58367967528; totalMemory: 83349209088; maxMemory: 127137742848
INFO 2026-06-08 09:52:46 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 09:52:52 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,492
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,852
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1658
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,716
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1835
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,126
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 3005
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,632
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,963
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,994
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,797
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,054
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1646
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,305
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,130
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:53:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,055
INFO 2026-06-08 09:53:26 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 09:53:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,675
INFO 2026-06-08 09:53:31 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:53:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,393
INFO 2026-06-08 09:54:15 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:54:15 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:55:36 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:55:39 MarkDuplicates After generateDuplicateIndexes freeMemory: 203980432; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:55:39 MarkDuplicates Marking 318742481 records as duplicates.
INFO 2026-06-08 09:55:39 MarkDuplicates Found 16500119 optical duplicate clusters.
INFO 2026-06-08 09:55:39 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:55:56 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,831,760
INFO 2026-06-08 09:56:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:43,981,783
INFO 2026-06-08 09:56:30 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:109,629,184
INFO 2026-06-08 09:56:46 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 16s. Last read position: chr1:154,173,180
INFO 2026-06-08 09:57:03 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:186,332,303
INFO 2026-06-08 09:57:20 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr2:3,498,942
INFO 2026-06-08 09:57:36 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:57s. Time for last 10,000,000: 16s. Last read position: chr2:44,313,864
INFO 2026-06-08 09:57:53 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 16s. Last read position: chr2:101,888,823
INFO 2026-06-08 09:58:10 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:30s. Time for last 10,000,000: 16s. Last read position: chr2:172,487,414
INFO 2026-06-08 09:58:27 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 16s. Last read position: chr2:233,672,510
INFO 2026-06-08 09:58:43 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:04s. Time for last 10,000,000: 16s. Last read position: chr3:52,510,011
INFO 2026-06-08 09:59:00 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 16s. Last read position: chr3:139,374,553
INFO 2026-06-08 09:59:17 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 16s. Last read position: chr4:6,641,092
INFO 2026-06-08 09:59:34 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:54s. Time for last 10,000,000: 16s. Last read position: chr4:107,908,560
INFO 2026-06-08 09:59:51 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:11s. Time for last 10,000,000: 16s. Last read position: chr5:32,015,865
INFO 2026-06-08 10:00:08 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:28s. Time for last 10,000,000: 16s. Last read position: chr5:132,734,352
INFO 2026-06-08 10:00:24 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:44s. Time for last 10,000,000: 16s. Last read position: chr5:151,026,882
INFO 2026-06-08 10:00:41 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:01s. Time for last 10,000,000: 16s. Last read position: chr6:11,191,157
INFO 2026-06-08 10:00:57 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 16s. Last read position: chr6:31,829,204
INFO 2026-06-08 10:01:14 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 16s. Last read position: chr6:37,474,623
INFO 2026-06-08 10:01:31 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:51s. Time for last 10,000,000: 16s. Last read position: chr6:111,373,576
INFO 2026-06-08 10:01:47 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 16s. Last read position: chr6:160,258,593
INFO 2026-06-08 10:02:04 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 16s. Last read position: chr7:55,152,549
INFO 2026-06-08 10:02:21 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 16s. Last read position: chr7:100,089,718
INFO 2026-06-08 10:02:38 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 16s. Last read position: chr7:140,778,022
INFO 2026-06-08 10:02:55 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 16s. Last read position: chr8:37,696,032
INFO 2026-06-08 10:03:12 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 16s. Last read position: chr8:133,259,220
INFO 2026-06-08 10:03:28 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 16s. Last read position: chr9:14,307,364
INFO 2026-06-08 10:03:45 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 16s. Last read position: chr9:100,320,358
INFO 2026-06-08 10:04:02 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:22s. Time for last 10,000,000: 16s. Last read position: chr9:136,431,944
INFO 2026-06-08 10:04:19 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 16s. Last read position: chr10:44,970,249
INFO 2026-06-08 10:04:35 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:56s. Time for last 10,000,000: 16s. Last read position: chr10:95,868,292
INFO 2026-06-08 10:04:52 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 16s. Last read position: chr11:850,216
INFO 2026-06-08 10:05:09 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:29s. Time for last 10,000,000: 16s. Last read position: chr11:57,811,471
INFO 2026-06-08 10:05:26 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 16s. Last read position: chr11:66,624,520
INFO 2026-06-08 10:05:42 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 16s. Last read position: chr11:112,094,805
INFO 2026-06-08 10:05:59 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 16s. Last read position: chr12:6,966,420
INFO 2026-06-08 10:06:16 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 16s. Last read position: chr12:53,443,548
INFO 2026-06-08 10:06:33 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 16s. Last read position: chr12:96,259,829
INFO 2026-06-08 10:06:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 16s. Last read position: chr13:22,897,711
INFO 2026-06-08 10:07:06 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 16s. Last read position: chr14:20,801,413
INFO 2026-06-08 10:07:23 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 16s. Last read position: chr14:73,287,168
INFO 2026-06-08 10:07:40 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 16s. Last read position: chr15:34,382,874
INFO 2026-06-08 10:07:57 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:17s. Time for last 10,000,000: 16s. Last read position: chr15:74,628,003
INFO 2026-06-08 10:08:14 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 16s. Last read position: chr16:2,246,858
INFO 2026-06-08 10:08:31 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:51s. Time for last 10,000,000: 16s. Last read position: chr16:20,471,648
INFO 2026-06-08 10:08:48 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:08s. Time for last 10,000,000: 16s. Last read position: chr16:31,184,225
INFO 2026-06-08 10:09:04 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 16s. Last read position: chr16:81,652,262
INFO 2026-06-08 10:09:21 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:41s. Time for last 10,000,000: 16s. Last read position: chr17:7,417,440
INFO 2026-06-08 10:09:38 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 16s. Last read position: chr17:31,260,375
INFO 2026-06-08 10:09:54 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 16s. Last read position: chr17:44,091,807
INFO 2026-06-08 10:10:11 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:31s. Time for last 10,000,000: 16s. Last read position: chr17:67,178,783
INFO 2026-06-08 10:10:28 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 16s. Last read position: chr17:81,868,783
INFO 2026-06-08 10:10:45 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 16s. Last read position: chr19:804,293
INFO 2026-06-08 10:11:01 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:21s. Time for last 10,000,000: 16s. Last read position: chr19:10,140,266
INFO 2026-06-08 10:11:18 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 16s. Last read position: chr19:19,634,024
INFO 2026-06-08 10:11:35 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:55s. Time for last 10,000,000: 16s. Last read position: chr19:45,408,397
INFO 2026-06-08 10:11:51 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:11s. Time for last 10,000,000: 16s. Last read position: chr20:419,387
INFO 2026-06-08 10:12:08 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 16s. Last read position: chr20:57,565,372
INFO 2026-06-08 10:12:24 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 16s. Last read position: chr21:43,981,124
INFO 2026-06-08 10:12:41 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:01s. Time for last 10,000,000: 16s. Last read position: chr22:31,620,602
INFO 2026-06-08 10:12:58 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:18s. Time for last 10,000,000: 16s. Last read position: chrX:1,391,921
INFO 2026-06-08 10:13:14 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:35s. Time for last 10,000,000: 16s. Last read position: chrX:106,928,716
INFO 2026-06-08 10:13:30 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:50s. Time for last 10,000,000: 15s. Last read position: KI270733.1:178,781
INFO 2026-06-08 10:13:39 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:13:39 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:13:39 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:13:39 MarkDuplicates Before output close freeMemory: 203933176; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:13:39 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:13:39 MarkDuplicates After output close freeMemory: 104182872; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:13:39 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 46.46 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory