File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/39132896c4480ea86bd4eea93c3239/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-eecf9f-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/fe2123a458114fea112bc3e301b2ce/aih-tih-sc-eecf9f-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/39132896c4480ea86bd4eea93c3239/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/39132896c4480ea86bd4eea93c3239/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/6f759ade076058739923fb9c31ea5f/aih-tih-sc-eecf9f-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
PRSS27--TPSB2
starfusion
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
TRAPPC9--KCNK9
arriba
TVP23C--CDRT4
arriba
CGNL1--NDUFB10P1
arriba
CGNL1--CGNL1
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing PRSS27--TPSB2:   0%|          | 0/14 [00:00<?, ?it/s]
Processing PRSS27--TPSB2:   7%|▋         | 1/14 [00:00<00:01,  9.23it/s]
Processing PCDHA11--PCDHAC1:   7%|▋         | 1/14 [00:00<00:01,  9.23it/s]
Processing PCDHA11--PCDHAC1:  14%|█▍        | 2/14 [00:00<00:01,  9.46it/s]
Processing PCDHA11--PCDHAC2:  14%|█▍        | 2/14 [00:00<00:01,  9.46it/s]
Processing PCDHA11--PCDHAC2:  21%|██▏       | 3/14 [00:00<00:01,  9.54it/s]
Processing PCDHA11--PCDHA13:  21%|██▏       | 3/14 [00:00<00:01,  9.54it/s]
Processing PCDHA11--PCDHA13:  29%|██▊       | 4/14 [00:00<00:01,  9.58it/s]
Processing PCDHA10--PCDHAC1:  29%|██▊       | 4/14 [00:00<00:01,  9.58it/s]
Processing PCDHA10--PCDHAC1:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]
Processing PCDHA10--PCDHAC2:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]
Processing PCDHA10--PCDHAC2:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing PCDHA10--PCDHA13:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing PCDHA10--PCDHA13:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC1:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s] 
Processing PCDHA4--PCDHAC1:  57%|█████▋    | 8/14 [00:00<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  57%|█████▋    | 8/14 [00:00<00:00,  9.62it/s]
Processing PCDHA4--PCDHAC2:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  71%|███████▏  | 10/14 [00:01<00:00,  9.63it/s]
Processing TRAPPC9--KCNK9:  71%|███████▏  | 10/14 [00:01<00:00,  9.63it/s] 
Processing TRAPPC9--KCNK9:  79%|███████▊  | 11/14 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  79%|███████▊  | 11/14 [00:01<00:00,  9.63it/s] 
Processing TVP23C--CDRT4:  86%|████████▌ | 12/14 [00:01<00:00,  9.63it/s]
Processing CGNL1--NDUFB10P1:  86%|████████▌ | 12/14 [00:01<00:00,  9.63it/s]
Processing CGNL1--NDUFB10P1:  93%|█████████▎| 13/14 [00:01<00:00,  9.64it/s]
Processing CGNL1--CGNL1:  93%|█████████▎| 13/14 [00:01<00:00,  9.64it/s]    
Processing CGNL1--CGNL1: 100%|██████████| 14/14 [00:01<00:00,  9.64it/s]
Processing CGNL1--CGNL1: 100%|██████████| 14/14 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory