Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/efedf9c256727b30ecd682c62a130f/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/ab8e3ed98726fe2af8399bd8e364ab/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/ab8e3ed98726fe2af8399bd8e364ab/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
paired = 32447178
unpaired = 659222
MERGED PAIRED END READS = 32447178
MATES PROCESSED = 65553578
TOTAL READS = 33106400
DISTINCT READS = 7.76496e+06
DISTINCT COUNTS = 448
MAX COUNT = 88471
COUNTS OF 1 = 2.67092e+06
MAX TERMS = 100
OBSERVED COUNTS (88472)
1 2670917
2 1207499
3 840768
4 643557
5 500696
6 393445
7 309014
8 241174
9 189355
10 148395
11 116596
12 91877
13 72806
14 57563
15 45689
16 37029
17 29983
18 24575
19 20027
20 16456
21 13582
22 11328
23 9629
24 8228
25 7128
26 5840
27 5151
28 4353
29 3926
30 3437
31 3031
32 2646
33 2299
34 2059
35 1845
36 1652
37 1497
38 1334
39 1188
40 1002
41 942
42 915
43 846
44 771
45 637
46 635
47 565
48 512
49 465
50 449
51 395
52 388
53 348
54 307
55 334
56 274
57 283
58 275
59 245
60 216
61 230
62 225
63 195
64 191
65 186
66 178
67 148
68 160
69 154
70 140
71 124
72 143
73 126
74 98
75 126
76 109
77 119
78 97
79 76
80 92
81 101
82 73
83 92
84 78
85 74
86 73
87 86
88 71
89 75
90 70
91 64
92 65
93 68
94 50
95 60
96 51
97 52
98 48
99 49
100 57
101 53
102 41
103 35
104 38
105 34
106 40
107 40
108 33
109 32
110 38
111 42
112 29
113 35
114 41
115 35
116 32
117 31
118 24
119 27
120 31
121 31
122 24
123 24
124 33
125 20
126 23
127 22
128 20
129 17
130 23
131 18
132 27
133 18
134 26
135 23
136 19
137 14
138 23
139 16
140 18
141 24
142 18
143 21
144 15
145 12
146 12
147 13
148 12
149 13
150 17
151 12
152 19
153 21
154 11
155 16
156 13
157 16
158 9
159 11
160 13
161 4
162 9
163 13
164 12
165 8
166 9
167 13
168 10
169 10
170 7
171 12
172 4
173 7
174 10
175 10
176 11
177 4
178 12
179 9
180 10
181 9
182 5
183 10
184 8
185 6
186 4
187 5
188 3
189 9
190 11
191 8
192 9
193 5
194 9
195 10
196 7
197 6
198 5
199 7
200 5
201 8
202 9
203 2
204 7
205 2
206 6
207 2
208 4
209 7
210 3
211 6
212 5
213 9
214 8
215 3
216 5
217 6
218 5
219 6
220 6
221 5
222 2
223 3
224 7
225 5
226 3
227 6
228 8
229 6
230 3
231 5
232 4
233 4
234 5
235 1
236 3
237 4
238 4
239 4
240 3
241 1
242 2
243 1
244 5
245 2
246 2
247 2
248 7
249 6
250 3
251 6
252 5
253 5
254 1
255 3
256 5
257 2
258 1
259 1
260 5
261 3
263 2
264 2
265 1
266 3
267 2
268 1
269 4
271 2
272 3
273 2
274 3
275 3
276 4
277 1
278 1
279 2
280 1
282 3
283 3
284 5
286 2
287 1
288 1
290 3
291 1
292 4
294 2
295 1
296 1
297 5
298 1
300 2
301 1
302 1
303 3
304 2
306 2
307 2
308 2
313 2
314 1
315 1
316 2
318 3
319 1
320 1
321 2
322 4
324 1
325 2
326 1
327 1
328 2
329 1
331 2
332 2
333 3
334 1
335 3
336 1
338 2
339 2
341 2
342 1
343 1
344 2
346 2
349 3
350 1
352 1
353 2
354 2
356 2
357 1
358 1
362 2
363 1
364 2
365 1
366 1
368 3
370 2
374 1
375 1
379 1
385 2
386 1
387 1
388 1
389 1
390 1
392 1
394 2
399 1
401 2
403 1
404 1
405 1
406 1
407 1
408 1
412 1
415 2
417 1
419 1
423 1
432 1
433 1
434 1
439 1
441 1
444 1
445 1
454 1
455 1
457 1
459 1
462 1
463 2
466 1
472 1
479 1
487 1
492 1
493 1
495 2
498 1
499 1
503 1
504 1
505 1
509 1
514 1
517 1
518 1
519 1
523 1
524 1
528 1
530 1
547 1
549 1
552 1
556 1
561 1
564 1
566 1
567 1
577 1
579 1
582 1
583 1
598 2
607 1
611 1
628 1
651 1
655 1
662 1
681 1
700 1
705 1
729 1
738 1
788 1
789 1
805 1
825 1
847 1
863 1
870 1
874 1
899 1
925 1
955 1
998 1
1003 1
1020 1
1065 1
1310 1
1468 1
1669 1
1740 1
1866 1
1908 1
4854 1
88471 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._..................................................................
..............._..............
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]