Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/efedf9c256727b30ecd682c62a130f/aih-tih-sc-24ecfe-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/ab8e3ed98726fe2af8399bd8e364ab/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/ab8e3ed98726fe2af8399bd8e364ab/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records paired = 32447178 unpaired = 659222 MERGED PAIRED END READS = 32447178 MATES PROCESSED = 65553578 TOTAL READS = 33106400 DISTINCT READS = 7.76496e+06 DISTINCT COUNTS = 448 MAX COUNT = 88471 COUNTS OF 1 = 2.67092e+06 MAX TERMS = 100 OBSERVED COUNTS (88472) 1 2670917 2 1207499 3 840768 4 643557 5 500696 6 393445 7 309014 8 241174 9 189355 10 148395 11 116596 12 91877 13 72806 14 57563 15 45689 16 37029 17 29983 18 24575 19 20027 20 16456 21 13582 22 11328 23 9629 24 8228 25 7128 26 5840 27 5151 28 4353 29 3926 30 3437 31 3031 32 2646 33 2299 34 2059 35 1845 36 1652 37 1497 38 1334 39 1188 40 1002 41 942 42 915 43 846 44 771 45 637 46 635 47 565 48 512 49 465 50 449 51 395 52 388 53 348 54 307 55 334 56 274 57 283 58 275 59 245 60 216 61 230 62 225 63 195 64 191 65 186 66 178 67 148 68 160 69 154 70 140 71 124 72 143 73 126 74 98 75 126 76 109 77 119 78 97 79 76 80 92 81 101 82 73 83 92 84 78 85 74 86 73 87 86 88 71 89 75 90 70 91 64 92 65 93 68 94 50 95 60 96 51 97 52 98 48 99 49 100 57 101 53 102 41 103 35 104 38 105 34 106 40 107 40 108 33 109 32 110 38 111 42 112 29 113 35 114 41 115 35 116 32 117 31 118 24 119 27 120 31 121 31 122 24 123 24 124 33 125 20 126 23 127 22 128 20 129 17 130 23 131 18 132 27 133 18 134 26 135 23 136 19 137 14 138 23 139 16 140 18 141 24 142 18 143 21 144 15 145 12 146 12 147 13 148 12 149 13 150 17 151 12 152 19 153 21 154 11 155 16 156 13 157 16 158 9 159 11 160 13 161 4 162 9 163 13 164 12 165 8 166 9 167 13 168 10 169 10 170 7 171 12 172 4 173 7 174 10 175 10 176 11 177 4 178 12 179 9 180 10 181 9 182 5 183 10 184 8 185 6 186 4 187 5 188 3 189 9 190 11 191 8 192 9 193 5 194 9 195 10 196 7 197 6 198 5 199 7 200 5 201 8 202 9 203 2 204 7 205 2 206 6 207 2 208 4 209 7 210 3 211 6 212 5 213 9 214 8 215 3 216 5 217 6 218 5 219 6 220 6 221 5 222 2 223 3 224 7 225 5 226 3 227 6 228 8 229 6 230 3 231 5 232 4 233 4 234 5 235 1 236 3 237 4 238 4 239 4 240 3 241 1 242 2 243 1 244 5 245 2 246 2 247 2 248 7 249 6 250 3 251 6 252 5 253 5 254 1 255 3 256 5 257 2 258 1 259 1 260 5 261 3 263 2 264 2 265 1 266 3 267 2 268 1 269 4 271 2 272 3 273 2 274 3 275 3 276 4 277 1 278 1 279 2 280 1 282 3 283 3 284 5 286 2 287 1 288 1 290 3 291 1 292 4 294 2 295 1 296 1 297 5 298 1 300 2 301 1 302 1 303 3 304 2 306 2 307 2 308 2 313 2 314 1 315 1 316 2 318 3 319 1 320 1 321 2 322 4 324 1 325 2 326 1 327 1 328 2 329 1 331 2 332 2 333 3 334 1 335 3 336 1 338 2 339 2 341 2 342 1 343 1 344 2 346 2 349 3 350 1 352 1 353 2 354 2 356 2 357 1 358 1 362 2 363 1 364 2 365 1 366 1 368 3 370 2 374 1 375 1 379 1 385 2 386 1 387 1 388 1 389 1 390 1 392 1 394 2 399 1 401 2 403 1 404 1 405 1 406 1 407 1 408 1 412 1 415 2 417 1 419 1 423 1 432 1 433 1 434 1 439 1 441 1 444 1 445 1 454 1 455 1 457 1 459 1 462 1 463 2 466 1 472 1 479 1 487 1 492 1 493 1 495 2 498 1 499 1 503 1 504 1 505 1 509 1 514 1 517 1 518 1 519 1 523 1 524 1 528 1 530 1 547 1 549 1 552 1 556 1 561 1 564 1 566 1 567 1 577 1 579 1 582 1 583 1 598 2 607 1 611 1 628 1 651 1 655 1 662 1 681 1 700 1 705 1 729 1 738 1 788 1 789 1 805 1 825 1 847 1 863 1 870 1 874 1 899 1 925 1 955 1 998 1 1003 1 1020 1 1065 1 1310 1 1468 1 1669 1 1740 1 1866 1 1908 1 4854 1 88471 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ....._.................................................................. ..............._.............. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]