File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/64d80eb349ce42ce5ab8d3716f9032/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (aih-tih-sc-3270ab-R1_A23YTGFLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/64d80eb349ce42ce5ab8d3716f9032/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/64d80eb349ce42ce5ab8d3716f9032/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/32b1627bff62bc74e23bc449e29e07/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/c9a7ffd7f5d04bbb558f5481f19afc/aih-tih-sc-3270ab-R1_A23YTGFLT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: aih-tih-sc-3270ab-R1_A23YTGFLT4_1/abundance.h5
Successfully converted aih-tih-sc-3270ab-R1_A23YTGFLT4_1/abundance.h5 to aih-tih-sc-3270ab-R1_A23YTGFLT4_1_kallisto_mqc.tsv
  Sample: aih-tih-sc-3270ab-R1_A23YTGFLT4_1
  Mean Fragment Length: 140.4 bp
  Median Fragment Length: 128.0 bp
  pct_mito_est_counts: 0.036%
  pct_ribo_est_counts: 0.857%
  pct_hk_est_counts: 0.489%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.079%
  pct_ribo_tpm: 2.666%
  pct_hk_tpm: 0.743%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.417%