Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/a9d12956ebb9c3de45e96bc72d6d61/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/2faf8cc5786116b5b4d1ee92329a7d/aih-tih-sc-da06ce-R1_A23YTGFLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/a9d12956ebb9c3de45e96bc72d6d61/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory