File Info
- Filename
- aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a3b3165eb888dc42cf67d2ba478ab4/aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1.fusions.csv
- Size
- 3.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2b9bfa-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| SRRM1--CLIC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:24643347:+#chr1:24839860:+,junction_reads: 110,spanning_reads: 0,ffmp: 0.3681 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 20,spanning_reads: 0,ffmp: 0.0649 | ||
| DTX2--PTPN12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:76492253:+#chr7:77571078:+,junction_reads: 17,spanning_reads: 0,ffmp: 0.0286 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0124 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 47,split_reads2: 40,discordant_mates: 1,coverage1: 632,coverage2: 299,confidence: high | |
| TRAPPC9--TRAPPC9 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr8:140397620#chr8:140451383,reading-frame: out-of-frame,type: duplication/non-canonical_splicing,split_reads1: 33,split_reads2: 46,discordant_mates: 0,coverage1: 1392,coverage2: 1071,confidence: high | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 31,split_reads2: 33,discordant_mates: 0,coverage1: 2216,coverage2: 291,confidence: high | ||
| PTPN12--MAGI2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:77592256#chr7:78343808,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 23,split_reads2: 3,discordant_mates: 1,coverage1: 3061,coverage2: 270,confidence: high | ||
| TOPORS--LINGO2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:32550774#chr9:28449150,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 21,split_reads2: 3,discordant_mates: 1,coverage1: 1443,coverage2: 3,confidence: high | ||
| TOPORS--BNC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:32550774#chr9:16875955,reading-frame: out-of-frame,type: inversion,split_reads1: 12,split_reads2: 2,discordant_mates: 0,coverage1: 1443,coverage2: 3,confidence: high | ||
| TOPORS--AL162725.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr9:32550774#chr9:16875955,reading-frame: out-of-frame,type: inversion,split_reads1: 12,split_reads2: 2,discordant_mates: 0,coverage1: 1443,coverage2: 3,confidence: high | ||
| TSBP1--NOTCH4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:32299922#chr6:32242047,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 2,discordant_mates: 0,coverage1: 1,coverage2: 21,confidence: high | ||
| TSBP1--TSBP1-AS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:32299922#chr6:32242047,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 8,split_reads2: 2,discordant_mates: 0,coverage1: 1,coverage2: 21,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 4,split_reads2: 6,discordant_mates: 0,coverage1: 51,coverage2: 133,confidence: high | ||
| FRG1DP--MLLT10P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:29101550#chr20:30404251,reading-frame: .,type: deletion,split_reads1: 1,split_reads2: 8,discordant_mates: 0,coverage1: 4,coverage2: 130,confidence: high | ||
| FRG1DP--5_8S_rRNA | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:29101550#chr20:30404251,reading-frame: .,type: deletion,split_reads1: 1,split_reads2: 8,discordant_mates: 0,coverage1: 4,coverage2: 130,confidence: high |
17 rows