File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/5401e4b553fc74adce5f39338cf221/.command.log
Size
5.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-885658-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/a115180c2730cb79c99df6c447c194/aih-tih-sc-885658-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/5401e4b553fc74adce5f39338cf221/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/5401e4b553fc74adce5f39338cf221/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/4ca5f0b9992acba32b1008ad229071/aih-tih-sc-885658-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
MYH9--NAP1L1
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
NAP1L1--MYH9
starfusion
arriba
NADK2--RALYL
starfusion
arriba
RNGTT--NCAM1
starfusion
arriba
PRLR--NADK2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
NSD3--UGT3A2
starfusion
DCAF1--APPL1
starfusion
LINC01138--SEC22B3P
starfusion
LHFPL5--CLPSL1
starfusion
STX16--NPEPL1
arriba
CST9--CST9L
arriba
TVP23C--CDRT4
arriba
EPC1--RPS24P13
arriba
EPC1--AL158834.2
arriba
CAPN5--AC244258.1
arriba
HOXC13--HOXC11
arriba
HOXC12--HOXC11
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
PRLR--AC090204.1
arriba
PRLR--AC104027.1
arriba

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Processing MYH9--NAP1L1:   0%|          | 0/25 [00:00<?, ?it/s]
Processing MYH9--NAP1L1:   4%|▍         | 1/25 [00:00<00:02,  8.68it/s]
Processing FSIP1--AC013652.1:   4%|▍         | 1/25 [00:00<00:02,  8.68it/s]
Processing FSIP1--AC013652.1:   8%|▊         | 2/25 [00:00<00:02,  9.10it/s]
Processing NAP1L1--MYH9:   8%|▊         | 2/25 [00:00<00:02,  9.10it/s]     
Processing NAP1L1--MYH9:  12%|█▏        | 3/25 [00:00<00:02,  9.24it/s]
Processing NADK2--RALYL:  12%|█▏        | 3/25 [00:00<00:02,  9.24it/s]
Processing NADK2--RALYL:  16%|█▌        | 4/25 [00:00<00:02,  9.31it/s]
Processing RNGTT--NCAM1:  16%|█▌        | 4/25 [00:00<00:02,  9.31it/s]
Processing RNGTT--NCAM1:  20%|██        | 5/25 [00:00<00:02,  9.34it/s]
Processing PRLR--NADK2:  20%|██        | 5/25 [00:00<00:02,  9.34it/s] 
Processing PRLR--NADK2:  24%|██▍       | 6/25 [00:00<00:02,  9.38it/s]
Processing TLK2P1--AC110079.1:  24%|██▍       | 6/25 [00:00<00:02,  9.38it/s]
Processing TLK2P1--AC110079.1:  28%|██▊       | 7/25 [00:00<00:01,  9.40it/s]
Processing TLK2--AC240565.1:  28%|██▊       | 7/25 [00:00<00:01,  9.40it/s]  
Processing TLK2--AC240565.1:  32%|███▏      | 8/25 [00:00<00:01,  9.41it/s]
Processing NSD3--UGT3A2:  32%|███▏      | 8/25 [00:00<00:01,  9.41it/s]    
Processing NSD3--UGT3A2:  36%|███▌      | 9/25 [00:00<00:01,  9.42it/s]
Processing DCAF1--APPL1:  36%|███▌      | 9/25 [00:00<00:01,  9.42it/s]
Processing DCAF1--APPL1:  40%|████      | 10/25 [00:01<00:01,  9.42it/s]
Processing LINC01138--SEC22B3P:  40%|████      | 10/25 [00:01<00:01,  9.42it/s]
Processing LINC01138--SEC22B3P:  44%|████▍     | 11/25 [00:01<00:01,  9.42it/s]
Processing LHFPL5--CLPSL1:  44%|████▍     | 11/25 [00:01<00:01,  9.42it/s]     
Processing LHFPL5--CLPSL1:  48%|████▊     | 12/25 [00:01<00:01,  9.43it/s]
Processing STX16--NPEPL1:  48%|████▊     | 12/25 [00:01<00:01,  9.43it/s] 
Processing STX16--NPEPL1:  52%|█████▏    | 13/25 [00:01<00:01,  9.43it/s]
Processing CST9--CST9L:  52%|█████▏    | 13/25 [00:01<00:01,  9.43it/s]  
Processing CST9--CST9L:  56%|█████▌    | 14/25 [00:01<00:01,  9.43it/s]
Processing TVP23C--CDRT4:  56%|█████▌    | 14/25 [00:01<00:01,  9.43it/s]
Processing TVP23C--CDRT4:  60%|██████    | 15/25 [00:01<00:01,  9.42it/s]
Processing EPC1--RPS24P13:  60%|██████    | 15/25 [00:01<00:01,  9.42it/s]
Processing EPC1--RPS24P13:  64%|██████▍   | 16/25 [00:01<00:00,  9.42it/s]
Processing EPC1--AL158834.2:  64%|██████▍   | 16/25 [00:01<00:00,  9.42it/s]
Processing EPC1--AL158834.2:  68%|██████▊   | 17/25 [00:01<00:00,  9.42it/s]
Processing CAPN5--AC244258.1:  68%|██████▊   | 17/25 [00:01<00:00,  9.42it/s]
Processing CAPN5--AC244258.1:  72%|███████▏  | 18/25 [00:01<00:00,  9.42it/s]
Processing HOXC13--HOXC11:  72%|███████▏  | 18/25 [00:01<00:00,  9.42it/s]   
Processing HOXC13--HOXC11:  76%|███████▌  | 19/25 [00:02<00:00,  9.42it/s]
Processing HOXC12--HOXC11:  76%|███████▌  | 19/25 [00:02<00:00,  9.42it/s]
Processing HOXC12--HOXC11:  80%|████████  | 20/25 [00:02<00:00,  9.43it/s]
Processing PCDHA4--PCDHAC1:  80%|████████  | 20/25 [00:02<00:00,  9.43it/s]
Processing PCDHA4--PCDHAC1:  84%|████████▍ | 21/25 [00:02<00:00,  9.42it/s]
Processing PCDHA4--PCDHAC2:  84%|████████▍ | 21/25 [00:02<00:00,  9.42it/s]
Processing PCDHA4--PCDHAC2:  88%|████████▊ | 22/25 [00:02<00:00,  9.43it/s]
Processing PCDHA4--PCDHA13:  88%|████████▊ | 22/25 [00:02<00:00,  9.43it/s]
Processing PCDHA4--PCDHA13:  92%|█████████▏| 23/25 [00:02<00:00,  9.43it/s]
Processing PRLR--AC090204.1:  92%|█████████▏| 23/25 [00:02<00:00,  9.43it/s]
Processing PRLR--AC090204.1:  96%|█████████▌| 24/25 [00:02<00:00,  9.43it/s]
Processing PRLR--AC104027.1:  96%|█████████▌| 24/25 [00:02<00:00,  9.43it/s]
Processing PRLR--AC104027.1: 100%|██████████| 25/25 [00:02<00:00,  9.43it/s]
Processing PRLR--AC104027.1: 100%|██████████| 25/25 [00:02<00:00,  9.39it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory