#!/bin/bash -euo pipefail
FusionInspector \
        --fusions aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1.fusionreport.tsv \
        --genome_lib ctat_genome_lib_build_dir \
        --left_fq aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1_1.fastp.fastq.gz --right_fq aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1_2.fastp.fastq.gz \
        --CPU 8 \
        -O . \
        --out_prefix aih-tih-sc-d1f1a3-R1_A23YTGFLT4_1 \
        --vis  --annotate --examine_coding_effect

    cat <<-END_VERSIONS > versions.yml
    "NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR":
        STAR-Fusion: $(STAR-Fusion --version 2>&1 | grep -i 'version' | sed 's/STAR-Fusion version: //')
END_VERSIONS