Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/bcdb68745a9fbf26cfd36dca5f789b/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/9374facef24a6de5a2e2f3020a4eb8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/9374facef24a6de5a2e2f3020a4eb8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/2903aabf4d87add68f58268d6e8cda/aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2e5fe9-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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