Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8d87d58f5507a9940c671bcecc4371/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2244b9872e8e858ee7c1f77d339c72/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/a6b8e5060aa89cb6d16c705fcd6379/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2244b9872e8e858ee7c1f77d339c72/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ZSWIM6--CFTR
starfusion
arriba
ZNF318--DST
starfusion
arriba
PRSS27--TPSB2
starfusion
ABLIM1--WAPL
starfusion
arriba
SRSF3--UHRF1BP1
starfusion
UHRF1BP1--EYS
starfusion
arriba
SEC24B--CDKL2
starfusion
arriba
TLK2--AL669831.1
starfusion
TLK2P1--AC110079.1
starfusion
TAF15--AP2B1
starfusion
STX16--NPEPL1
starfusion
arriba
TRPM4--TRPM4
arriba
GSR--AC068672.1
arriba
GSR--AC090816.1
arriba
TMEM181--TMEM181
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
TVP23C--CDRT4
arriba
GSR--NRG1
arriba
GSR--NRG1-IT3
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
LRP12--ZFPM2
arriba
MLKL--CHSY1
arriba
MLKL--SELENOS
arriba
KLRC4--KLRK1
arriba
MACROD2--NRG1
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing ZSWIM6--CFTR:   0%|          | 0/39 [00:00<?, ?it/s]
Processing ZSWIM6--CFTR:   3%|▎         | 1/39 [00:00<00:04,  9.26it/s]
Processing ZNF318--DST:   3%|▎         | 1/39 [00:00<00:04,  9.26it/s] 
Processing ZNF318--DST:   5%|▌         | 2/39 [00:00<00:03,  9.49it/s]
Processing PRSS27--TPSB2:   5%|▌         | 2/39 [00:00<00:03,  9.49it/s]
Processing PRSS27--TPSB2:   8%|▊         | 3/39 [00:00<00:03,  9.56it/s]
Processing ABLIM1--WAPL:   8%|▊         | 3/39 [00:00<00:03,  9.56it/s] 
Processing ABLIM1--WAPL:  10%|█         | 4/39 [00:00<00:03,  9.60it/s]
Processing SRSF3--UHRF1BP1:  10%|█         | 4/39 [00:00<00:03,  9.60it/s]
Processing SRSF3--UHRF1BP1:  13%|█▎        | 5/39 [00:00<00:03,  9.62it/s]
Processing UHRF1BP1--EYS:  13%|█▎        | 5/39 [00:00<00:03,  9.62it/s]  
Processing UHRF1BP1--EYS:  15%|█▌        | 6/39 [00:00<00:03,  9.63it/s]
Processing SEC24B--CDKL2:  15%|█▌        | 6/39 [00:00<00:03,  9.63it/s]
Processing SEC24B--CDKL2:  18%|█▊        | 7/39 [00:00<00:03,  9.64it/s]
Processing TLK2--AL669831.1:  18%|█▊        | 7/39 [00:00<00:03,  9.64it/s]
Processing TLK2--AL669831.1:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 9/39 [00:00<00:03,  9.65it/s]
Processing TAF15--AP2B1:  23%|██▎       | 9/39 [00:00<00:03,  9.65it/s]      
Processing TAF15--AP2B1:  26%|██▌       | 10/39 [00:01<00:03,  9.65it/s]
Processing STX16--NPEPL1:  26%|██▌       | 10/39 [00:01<00:03,  9.65it/s]
Processing STX16--NPEPL1:  28%|██▊       | 11/39 [00:01<00:02,  9.65it/s]
Processing TRPM4--TRPM4:  28%|██▊       | 11/39 [00:01<00:02,  9.65it/s] 
Processing TRPM4--TRPM4:  31%|███       | 12/39 [00:01<00:02,  9.65it/s]
Processing GSR--AC068672.1:  31%|███       | 12/39 [00:01<00:02,  9.65it/s]
Processing GSR--AC068672.1:  33%|███▎      | 13/39 [00:01<00:02,  9.65it/s]
Processing GSR--AC090816.1:  33%|███▎      | 13/39 [00:01<00:02,  9.65it/s]
Processing GSR--AC090816.1:  36%|███▌      | 14/39 [00:01<00:02,  9.65it/s]
Processing TMEM181--TMEM181:  36%|███▌      | 14/39 [00:01<00:02,  9.65it/s]
Processing TMEM181--TMEM181:  38%|███▊      | 15/39 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 15/39 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  41%|████      | 16/39 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  41%|████      | 16/39 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  44%|████▎     | 17/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGC3:  44%|████▎     | 17/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGC3:  46%|████▌     | 18/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGA11:  46%|████▌     | 18/39 [00:01<00:02,  9.66it/s]
Processing PCDHGB2--PCDHGA11:  49%|████▊     | 19/39 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  49%|████▊     | 19/39 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  51%|█████▏    | 20/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  51%|█████▏    | 20/39 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGC5:  54%|█████▍    | 21/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  54%|█████▍    | 21/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  56%|█████▋    | 22/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  56%|█████▋    | 22/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  59%|█████▉    | 23/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  59%|█████▉    | 23/39 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  62%|██████▏   | 24/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  62%|██████▏   | 24/39 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  64%|██████▍   | 25/39 [00:02<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  64%|██████▍   | 25/39 [00:02<00:01,  9.65it/s]   
Processing TVP23C--CDRT4:  67%|██████▋   | 26/39 [00:02<00:01,  9.65it/s]
Processing GSR--NRG1:  67%|██████▋   | 26/39 [00:02<00:01,  9.65it/s]    
Processing GSR--NRG1:  69%|██████▉   | 27/39 [00:02<00:01,  9.65it/s]
Processing GSR--NRG1-IT3:  69%|██████▉   | 27/39 [00:02<00:01,  9.65it/s]
Processing GSR--NRG1-IT3:  72%|███████▏  | 28/39 [00:02<00:01,  9.65it/s]
Processing PCDHA4--PCDHAC1:  72%|███████▏  | 28/39 [00:02<00:01,  9.65it/s]
Processing PCDHA4--PCDHAC1:  74%|███████▍  | 29/39 [00:03<00:01,  9.65it/s]
Processing PCDHA4--PCDHAC2:  74%|███████▍  | 29/39 [00:03<00:01,  9.65it/s]
Processing PCDHA4--PCDHAC2:  77%|███████▋  | 30/39 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  77%|███████▋  | 30/39 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  79%|███████▉  | 31/39 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  79%|███████▉  | 31/39 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  82%|████████▏ | 32/39 [00:03<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  82%|████████▏ | 32/39 [00:03<00:00,  9.63it/s]
Processing PCDHA10--PCDHAC2:  85%|████████▍ | 33/39 [00:03<00:00,  9.55it/s]
Processing PCDHA10--PCDHA13:  85%|████████▍ | 33/39 [00:03<00:00,  9.55it/s]
Processing PCDHA10--PCDHA13:  87%|████████▋ | 34/39 [00:03<00:00,  9.53it/s]
Processing LRP12--ZFPM2:  87%|████████▋ | 34/39 [00:03<00:00,  9.53it/s]    
Processing LRP12--ZFPM2:  90%|████████▉ | 35/39 [00:03<00:00,  9.55it/s]
Processing MLKL--CHSY1:  90%|████████▉ | 35/39 [00:03<00:00,  9.55it/s] 
Processing MLKL--CHSY1:  92%|█████████▏| 36/39 [00:03<00:00,  9.57it/s]
Processing MLKL--SELENOS:  92%|█████████▏| 36/39 [00:03<00:00,  9.57it/s]
Processing MLKL--SELENOS:  95%|█████████▍| 37/39 [00:03<00:00,  9.60it/s]
Processing KLRC4--KLRK1:  95%|█████████▍| 37/39 [00:03<00:00,  9.60it/s] 
Processing KLRC4--KLRK1:  97%|█████████▋| 38/39 [00:03<00:00,  9.62it/s]
Processing MACROD2--NRG1:  97%|█████████▋| 38/39 [00:03<00:00,  9.62it/s]
Processing MACROD2--NRG1: 100%|██████████| 39/39 [00:04<00:00,  9.63it/s]
Processing MACROD2--NRG1: 100%|██████████| 39/39 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory