Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/1548bbe9a3e6b8d0ac6045649cf16f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/1548bbe9a3e6b8d0ac6045649cf16f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/0a3f9259913c858f73c5f0f697a9fb/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/d0a9f2f174d1d61cfaf2aa2164384e/aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 249797521
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	249797521
Known Splicing Events:	246833042
Partial Novel Splicing Events:	1144326
Novel Splicing Events:	1724007
Filtered Splicing Events:	96146

Total splicing  Junctions:	304569
Known Splicing Junctions:	212994
Partial Novel Splicing Junctions:	51474
Novel Splicing Junctions:	40101

===================================================================
Create BED file ...
Create Interact file ...