.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (FFPE_V4_0002_RNA_0002_A23YTGFLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/17217f4331e02f75f1dfc5b5ea88b4/.command.err
Size: 4.0 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (FFPE_V4_0002_RNA_0002_A23YTGFLT4_1)
Attempt
Content

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Processing FGFR3--TACC3:   0%|          | 0/23 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   4%|▍         | 1/23 [00:00<00:02,  9.24it/s]
Processing TMPRSS2--ERG:   4%|▍         | 1/23 [00:00<00:02,  9.24it/s]
Processing TMPRSS2--ERG:   9%|▊         | 2/23 [00:00<00:02,  9.48it/s]
Processing TPM3--NTRK1:   9%|▊         | 2/23 [00:00<00:02,  9.48it/s] 
Processing TPM3--NTRK1:  13%|█▎        | 3/23 [00:00<00:02,  9.56it/s]
Processing LMNA--NTRK1:  13%|█▎        | 3/23 [00:00<00:02,  9.56it/s]
Processing LMNA--NTRK1:  17%|█▋        | 4/23 [00:00<00:01,  9.59it/s]
Processing ETV6--NTRK3:  17%|█▋        | 4/23 [00:00<00:01,  9.59it/s]
Processing ETV6--NTRK3:  22%|██▏       | 5/23 [00:00<00:01,  9.62it/s]
Processing FGFR3--BAIAP2L1:  22%|██▏       | 5/23 [00:00<00:01,  9.62it/s]
Processing FGFR3--BAIAP2L1:  26%|██▌       | 6/23 [00:00<00:01,  9.63it/s]
Processing NCOA4--RET:  26%|██▌       | 6/23 [00:00<00:01,  9.63it/s]     
Processing NCOA4--RET:  30%|███       | 7/23 [00:00<00:01,  9.64it/s]
Processing SLC45A3--BRAF:  30%|███       | 7/23 [00:00<00:01,  9.64it/s]
Processing SLC45A3--BRAF:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]
Processing CCDC6--RET:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]   
Processing CCDC6--RET:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing KIF5B--RET:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing KIF5B--RET:  43%|████▎     | 10/23 [00:01<00:01,  9.65it/s]
Processing CD74--ROS1:  43%|████▎     | 10/23 [00:01<00:01,  9.65it/s]
Processing CD74--ROS1:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing SLC34A2--ROS1:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing SLC34A2--ROS1:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]
Processing PAX8--PPARG:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]  
Processing PAX8--PPARG:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]
Processing EGFR--SEPTIN14:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]
Processing EGFR--SEPTIN14:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]
Processing TFG--NTRK1:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]    
Processing TFG--NTRK1:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s]
Processing EML4--ALK:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s] 
Processing EML4--ALK:  70%|██████▉   | 16/23 [00:01<00:00,  9.64it/s]
Processing STX16--NPEPL1:  70%|██████▉   | 16/23 [00:01<00:00,  9.64it/s]
Processing STX16--NPEPL1:  74%|███████▍  | 17/23 [00:01<00:00,  9.65it/s]
Processing TLK2P1--AC110079.1:  74%|███████▍  | 17/23 [00:01<00:00,  9.65it/s]
Processing TLK2P1--AC110079.1:  78%|███████▊  | 18/23 [00:01<00:00,  9.65it/s]
Processing ACTBP6--ACTB:  78%|███████▊  | 18/23 [00:01<00:00,  9.65it/s]      
Processing ACTBP6--ACTB:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]
Processing TLK2--AC240565.1:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]
Processing TLK2--AC240565.1:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s]
Processing CDV3--MT-RNR2:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s]   
Processing CDV3--MT-RNR2:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing SOGA3--KIAA0408:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing SOGA3--KIAA0408: 100%|██████████| 23/23 [00:02<00:00,  9.65it/s]
Processing SOGA3--KIAA0408: 100%|██████████| 23/23 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory