Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/9bdef5eb3cdb5d20aecb96a4b777cb/fi_workdir/aih-tih-sc-7fa0fb-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/e03d0107bd4c4548ecf63c27b62494/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/e03d0107bd4c4548ecf63c27b62494/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 11526
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 11526
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:11526
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC060809.1--ERBB4 HAVANA gene 7877 31109 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "AC060809.1--ERBB4^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "AC060809.1--ERBB4^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "AC060809.1--ERBB4^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC060809.1--ERBB4 HAVANA mRNA 7877 31109 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "AC060809.1--ERBB4^ENST00000260943.10" ; Parent "AC060809.1--ERBB4^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "AC060809.1--ERBB4^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "AC060809.1--ERBB4^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--RNU6-710P HAVANA gene 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--RNU6-710P^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--RNU6-710P^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--RNU6-710P^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--RNU6-710P HAVANA mRNA 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--RNU6-710P^ENST00000288520.9" ; Parent "ASTN2--RNU6-710P^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--RNU6-710P^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--RNU6-710P^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--UGCG HAVANA gene 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--UGCG^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--UGCG^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--UGCG^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--UGCG HAVANA mRNA 19238 33668 . + . FI_gene_label "ASTN2^ENSG00000148219.18" ; ID "ASTN2--UGCG^ENST00000288520.9" ; Parent "ASTN2--UGCG^ASTN2^ENSG00000148219.18" ; ccdsid "CCDS48009.2" ; exon_id "ENSE00001518668.2" ; exon_number 1 ; gene_id "ASTN2--UGCG^ASTN2^ENSG00000148219.18" ; gene_name ASTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021013.2" ; havana_transcript "OTTHUMT00000055429.1" ; hgnc_id "HGNC:17021" ; level 2 ; orig_coord_info "chr9,116686697,116686805,-" ; protein_id "ENSP00000288520.5" ; tag basic CCDS ; transcript_id "ASTN2--UGCG^ENST00000288520.9" ; transcript_name "ASTN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASTN2--UGCG HAVANA gene 38785 51395 . + . FI_gene_label "UGCG^ENSG00000148154.10" ; ID "ASTN2--UGCG^UGCG^ENSG00000148154.10" ; ccdsid "CCDS6782.1" ; exon_id "ENSE00001463003.2" ; exon_number 1 ; gene_id "ASTN2--UGCG^UGCG^ENSG00000148154.10" ; gene_name UGCG ; gene_type protein_coding ; havana_gene "OTTHUMG00000020498.2" ; havana_transcript "OTTHUMT00000053661.2" ; hgnc_id "HGNC:12524" ; level 2 ; orig_coord_info "chr9,111897216,111897313,+" ; protein_id "ENSP00000363397.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ASTN2--UGCG^ENST00000374279.4" ; transcript_name "UGCG-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASTN2--UGCG HAVANA mRNA 38785 51395 . + . FI_gene_label "UGCG^ENSG00000148154.10" ; ID "ASTN2--UGCG^ENST00000374279.4" ; Parent "ASTN2--UGCG^UGCG^ENSG00000148154.10" ; ccdsid "CCDS6782.1" ; exon_id "ENSE00001463003.2" ; exon_number 1 ; gene_id "ASTN2--UGCG^UGCG^ENSG00000148154.10" ; gene_name UGCG ; gene_type protein_coding ; havana_gene "OTTHUMG00000020498.2" ; havana_transcript "OTTHUMT00000053661.2" ; hgnc_id "HGNC:12524" ; level 2 ; orig_coord_info "chr9,111897216,111897313,+" ; protein_id "ENSP00000363397.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ASTN2--UGCG^ENST00000374279.4" ; transcript_name "UGCG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B4GALT1--BRINP1 HAVANA gene 14084 24553 . + . FI_gene_label "BRINP1^ENSG00000078725.13" ; ID "B4GALT1--BRINP1^BRINP1^ENSG00000078725.13" ; ccdsid "CCDS6822.1" ; exon_id "ENSE00001168335.1" ; exon_number 2 ; gene_id "B4GALT1--BRINP1^BRINP1^ENSG00000078725.13" ; gene_name BRINP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021020.3" ; havana_transcript "OTTHUMT00000055440.3" ; hgnc_id "HGNC:2687" ; level 2 ; orig_coord_info "chr9,119313138,119313355,-" ; protein_id "ENSP00000265922.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B4GALT1--BRINP1^ENST00000265922.8" ; transcript_name "BRINP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
B4GALT1--BRINP1 HAVANA mRNA 14084 24553 . + . FI_gene_label "BRINP1^ENSG00000078725.13" ; ID "B4GALT1--BRINP1^ENST00000265922.8" ; Parent "B4GALT1--BRINP1^BRINP1^ENSG00000078725.13" ; ccdsid "CCDS6822.1" ; exon_id "ENSE00001168335.1" ; exon_number 2 ; gene_id "B4GALT1--BRINP1^BRINP1^ENSG00000078725.13" ; gene_name BRINP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021020.3" ; havana_transcript "OTTHUMT00000055440.3" ; hgnc_id "HGNC:2687" ; level 2 ; orig_coord_info "chr9,119313138,119313355,-" ; protein_id "ENSP00000265922.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B4GALT1--BRINP1^ENST00000265922.8" ; transcript_name "BRINP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B4GALT1--BRINP1 HAVANA gene 1021 9383 . + . FI_gene_label "B4GALT1^ENSG00000086062.13" ; ID "B4GALT1--BRINP1^B4GALT1^ENSG00000086062.13" ; ccdsid "CCDS6535.1" ; exon_id "ENSE00003903403.1" ; exon_number 1 ; gene_id "B4GALT1--BRINP1^B4GALT1^ENSG00000086062.13" ; gene_name B4GALT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019764.1" ; havana_transcript "OTTHUMT00000052039.1" ; hgnc_id "HGNC:924" ; level 2 ; orig_coord_info "chr9,33166758,33167169,-" ; protein_id "ENSP00000369055.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B4GALT1--BRINP1^ENST00000379731.5" ; transcript_name "B4GALT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
B4GALT1--BRINP1 HAVANA mRNA 1021 9383 . + . FI_gene_label "B4GALT1^ENSG00000086062.13" ; ID "B4GALT1--BRINP1^ENST00000379731.5" ; Parent "B4GALT1--BRINP1^B4GALT1^ENSG00000086062.13" ; ccdsid "CCDS6535.1" ; exon_id "ENSE00003903403.1" ; exon_number 1 ; gene_id "B4GALT1--BRINP1^B4GALT1^ENSG00000086062.13" ; gene_name B4GALT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019764.1" ; havana_transcript "OTTHUMT00000052039.1" ; hgnc_id "HGNC:924" ; level 2 ; orig_coord_info "chr9,33166758,33167169,-" ; protein_id "ENSP00000369055.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B4GALT1--BRINP1^ENST00000379731.5" ; transcript_name "B4GALT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--CA10 HAVANA gene 59745 75797 . + . FI_gene_label "CA10^ENSG00000154975.14" ; ID "BCAS3--CA10^CA10^ENSG00000154975.14" ; ccdsid "CCDS32684.1" ; exon_id "ENSE00001385786.3" ; exon_number 2 ; gene_id "BCAS3--CA10^CA10^ENSG00000154975.14" ; gene_name CA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177544.4" ; havana_transcript "OTTHUMT00000437480.1" ; hgnc_id "HGNC:1369" ; level 1 ; orig_coord_info "chr17,52157726,52157786,-" ; protein_id "ENSP00000285273.4" ; tag basic appris_principal_1 exp_conf CCDS ; transcript_id "BCAS3--CA10^ENST00000285273.8" ; transcript_name "CA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--CA10 HAVANA mRNA 59745 75797 . + . FI_gene_label "CA10^ENSG00000154975.14" ; ID "BCAS3--CA10^ENST00000285273.8" ; Parent "BCAS3--CA10^CA10^ENSG00000154975.14" ; ccdsid "CCDS32684.1" ; exon_id "ENSE00001385786.3" ; exon_number 2 ; gene_id "BCAS3--CA10^CA10^ENSG00000154975.14" ; gene_name CA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177544.4" ; havana_transcript "OTTHUMT00000437480.1" ; hgnc_id "HGNC:1369" ; level 1 ; orig_coord_info "chr17,52157726,52157786,-" ; protein_id "ENSP00000285273.4" ; tag basic appris_principal_1 exp_conf CCDS ; transcript_id "BCAS3--CA10^ENST00000285273.8" ; transcript_name "CA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--CA10 HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--CA10^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--CA10^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--CA10^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--CA10 HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--CA10^ENST00000390652.9" ; Parent "BCAS3--CA10^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--CA10^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--CA10^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--CYGB HAVANA gene 60843 65877 . + . FI_gene_label "CYGB^ENSG00000161544.10" ; ID "BCAS3--CYGB^CYGB^ENSG00000161544.10" ; ccdsid "CCDS11746.1" ; exon_id "ENSE00002806906.2" ; exon_number 1 ; gene_id "BCAS3--CYGB^CYGB^ENSG00000161544.10" ; gene_name CYGB ; gene_type protein_coding ; havana_gene "OTTHUMG00000180289.2" ; havana_transcript "OTTHUMT00000450590.2" ; hgnc_id "HGNC:16505" ; level 2 ; orig_coord_info "chr17,76537400,76537542,-" ; protein_id "ENSP00000293230.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCAS3--CYGB^ENST00000293230.10" ; transcript_name "CYGB-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--CYGB HAVANA mRNA 60843 65877 . + . FI_gene_label "CYGB^ENSG00000161544.10" ; ID "BCAS3--CYGB^ENST00000293230.10" ; Parent "BCAS3--CYGB^CYGB^ENSG00000161544.10" ; ccdsid "CCDS11746.1" ; exon_id "ENSE00002806906.2" ; exon_number 1 ; gene_id "BCAS3--CYGB^CYGB^ENSG00000161544.10" ; gene_name CYGB ; gene_type protein_coding ; havana_gene "OTTHUMG00000180289.2" ; havana_transcript "OTTHUMT00000450590.2" ; hgnc_id "HGNC:16505" ; level 2 ; orig_coord_info "chr17,76537400,76537542,-" ; protein_id "ENSP00000293230.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCAS3--CYGB^ENST00000293230.10" ; transcript_name "CYGB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--CYGB HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--CYGB^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--CYGB^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--CYGB^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--CYGB HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--CYGB^ENST00000390652.9" ; Parent "BCAS3--CYGB^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--CYGB^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--CYGB^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--RHBDF2 HAVANA gene 59912 74838 . + . FI_gene_label "RHBDF2^ENSG00000129667.13" ; ID "BCAS3--RHBDF2^RHBDF2^ENSG00000129667.13" ; ccdsid "CCDS32743.1" ; exon_id "ENSE00003511036.1" ; exon_number 3 ; gene_id "BCAS3--RHBDF2^RHBDF2^ENSG00000129667.13" ; gene_name RHBDF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180180.3" ; havana_transcript "OTTHUMT00000450134.1" ; hgnc_id "HGNC:20788" ; level 2 ; orig_coord_info "chr17,76481375,76481524,-" ; protein_id "ENSP00000322775.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "BCAS3--RHBDF2^ENST00000313080.8" ; transcript_name "RHBDF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--RHBDF2 HAVANA mRNA 59912 74838 . + . FI_gene_label "RHBDF2^ENSG00000129667.13" ; ID "BCAS3--RHBDF2^ENST00000313080.8" ; Parent "BCAS3--RHBDF2^RHBDF2^ENSG00000129667.13" ; ccdsid "CCDS32743.1" ; exon_id "ENSE00003511036.1" ; exon_number 3 ; gene_id "BCAS3--RHBDF2^RHBDF2^ENSG00000129667.13" ; gene_name RHBDF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180180.3" ; havana_transcript "OTTHUMT00000450134.1" ; hgnc_id "HGNC:20788" ; level 2 ; orig_coord_info "chr17,76481375,76481524,-" ; protein_id "ENSP00000322775.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "BCAS3--RHBDF2^ENST00000313080.8" ; transcript_name "RHBDF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCAS3--RHBDF2 HAVANA gene 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--RHBDF2^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--RHBDF2^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--RHBDF2^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCAS3--RHBDF2 HAVANA mRNA 1437 56528 . + . FI_gene_label "BCAS3^ENSG00000141376.23" ; ID "BCAS3--RHBDF2^ENST00000390652.9" ; Parent "BCAS3--RHBDF2^BCAS3^ENSG00000141376.23" ; ccdsid "CCDS45749.1" ; exon_id "ENSE00003693165.1" ; exon_number 2 ; gene_id "BCAS3--RHBDF2^BCAS3^ENSG00000141376.23" ; gene_name BCAS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180064.2" ; havana_transcript "OTTHUMT00000449578.1" ; hgnc_id "HGNC:14347" ; level 2 ; orig_coord_info "chr17,60679458,60679540,+" ; protein_id "ENSP00000375067.4" ; tag basic CCDS ; transcript_id "BCAS3--RHBDF2^ENST00000390652.9" ; transcript_name "BCAS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CACNB1--LINC00536 HAVANA gene 1001 13112 . + . FI_gene_label "CACNB1^ENSG00000067191.16" ; ID "CACNB1--LINC00536^CACNB1^ENSG00000067191.16" ; ccdsid "CCDS11334.1" ; exon_id "ENSE00002703065.1" ; exon_number 1 ; gene_id "CACNB1--LINC00536^CACNB1^ENSG00000067191.16" ; gene_name CACNB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133217.5" ; havana_transcript "OTTHUMT00000256946.2" ; hgnc_id "HGNC:1401" ; level 2 ; orig_coord_info "chr17,39197412,39197495,-" ; protein_id "ENSP00000345461.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CACNB1--LINC00536^ENST00000344140.5" ; transcript_name "CACNB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CACNB1--LINC00536 HAVANA mRNA 1001 13112 . + . FI_gene_label "CACNB1^ENSG00000067191.16" ; ID "CACNB1--LINC00536^ENST00000344140.5" ; Parent "CACNB1--LINC00536^CACNB1^ENSG00000067191.16" ; ccdsid "CCDS11334.1" ; exon_id "ENSE00002703065.1" ; exon_number 1 ; gene_id "CACNB1--LINC00536^CACNB1^ENSG00000067191.16" ; gene_name CACNB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133217.5" ; havana_transcript "OTTHUMT00000256946.2" ; hgnc_id "HGNC:1401" ; level 2 ; orig_coord_info "chr17,39197412,39197495,-" ; protein_id "ENSP00000345461.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CACNB1--LINC00536^ENST00000344140.5" ; transcript_name "CACNB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CACNB1--TRPS1 HAVANA gene 22277 38929 . + . FI_gene_label "TRPS1^ENSG00000104447.13" ; ID "CACNB1--TRPS1^TRPS1^ENSG00000104447.13" ; ccdsid "CCDS83316.1" ; exon_id "ENSE00003549754.1" ; exon_number 2 ; gene_id "CACNB1--TRPS1^TRPS1^ENSG00000104447.13" ; gene_name TRPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142829.6" ; havana_transcript "OTTHUMT00000286436.3" ; hgnc_id "HGNC:12340" ; level 2 ; orig_coord_info "chr8,115619132,115620058,-" ; protein_id "ENSP00000220888.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CACNB1--TRPS1^ENST00000220888.9" ; transcript_name "TRPS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CACNB1--TRPS1 HAVANA mRNA 22277 38929 . + . FI_gene_label "TRPS1^ENSG00000104447.13" ; ID "CACNB1--TRPS1^ENST00000220888.9" ; Parent "CACNB1--TRPS1^TRPS1^ENSG00000104447.13" ; ccdsid "CCDS83316.1" ; exon_id "ENSE00003549754.1" ; exon_number 2 ; gene_id "CACNB1--TRPS1^TRPS1^ENSG00000104447.13" ; gene_name TRPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142829.6" ; havana_transcript "OTTHUMT00000286436.3" ; hgnc_id "HGNC:12340" ; level 2 ; orig_coord_info "chr8,115619132,115620058,-" ; protein_id "ENSP00000220888.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CACNB1--TRPS1^ENST00000220888.9" ; transcript_name "TRPS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CACNB1--TRPS1 HAVANA gene 1001 13112 . + . FI_gene_label "CACNB1^ENSG00000067191.16" ; ID "CACNB1--TRPS1^CACNB1^ENSG00000067191.16" ; ccdsid "CCDS11334.1" ; exon_id "ENSE00002703065.1" ; exon_number 1 ; gene_id "CACNB1--TRPS1^CACNB1^ENSG00000067191.16" ; gene_name CACNB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133217.5" ; havana_transcript "OTTHUMT00000256946.2" ; hgnc_id "HGNC:1401" ; level 2 ; orig_coord_info "chr17,39197412,39197495,-" ; protein_id "ENSP00000345461.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CACNB1--TRPS1^ENST00000344140.5" ; transcript_name "CACNB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CACNB1--TRPS1 HAVANA mRNA 1001 13112 . + . FI_gene_label "CACNB1^ENSG00000067191.16" ; ID "CACNB1--TRPS1^ENST00000344140.5" ; Parent "CACNB1--TRPS1^CACNB1^ENSG00000067191.16" ; ccdsid "CCDS11334.1" ; exon_id "ENSE00002703065.1" ; exon_number 1 ; gene_id "CACNB1--TRPS1^CACNB1^ENSG00000067191.16" ; gene_name CACNB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133217.5" ; havana_transcript "OTTHUMT00000256946.2" ; hgnc_id "HGNC:1401" ; level 2 ; orig_coord_info "chr17,39197412,39197495,-" ; protein_id "ENSP00000345461.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CACNB1--TRPS1^ENST00000344140.5" ; transcript_name "CACNB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASC3--WIPF2 HAVANA gene 1220 12079 . + . FI_gene_label "CASC3^ENSG00000108349.17" ; ID "CASC3--WIPF2^CASC3^ENSG00000108349.17" ; ccdsid "CCDS11362.1" ; exon_id "ENSE00001306828.6" ; exon_number 1 ; gene_id "CASC3--WIPF2^CASC3^ENSG00000108349.17" ; gene_name CASC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133323.6" ; havana_transcript "OTTHUMT00000257127.4" ; hgnc_id "HGNC:17040" ; level 2 ; orig_coord_info "chr17,40140549,40140779,+" ; protein_id "ENSP00000264645.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASC3--WIPF2^ENST00000264645.12" ; transcript_name "CASC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CASC3--WIPF2 HAVANA mRNA 1220 12079 . + . FI_gene_label "CASC3^ENSG00000108349.17" ; ID "CASC3--WIPF2^ENST00000264645.12" ; Parent "CASC3--WIPF2^CASC3^ENSG00000108349.17" ; ccdsid "CCDS11362.1" ; exon_id "ENSE00001306828.6" ; exon_number 1 ; gene_id "CASC3--WIPF2^CASC3^ENSG00000108349.17" ; gene_name CASC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133323.6" ; havana_transcript "OTTHUMT00000257127.4" ; hgnc_id "HGNC:17040" ; level 2 ; orig_coord_info "chr17,40140549,40140779,+" ; protein_id "ENSP00000264645.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASC3--WIPF2^ENST00000264645.12" ; transcript_name "CASC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASC3--WIPF2 HAVANA gene 15080 30968 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "CASC3--WIPF2^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "CASC3--WIPF2^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CASC3--WIPF2^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CASC3--WIPF2 HAVANA mRNA 15080 30968 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "CASC3--WIPF2^ENST00000323571.9" ; Parent "CASC3--WIPF2^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "CASC3--WIPF2^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CASC3--WIPF2^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP43--ERBB4 HAVANA gene 32920 56152 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "CEP43--ERBB4^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "CEP43--ERBB4^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "CEP43--ERBB4^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
CEP43--ERBB4 HAVANA mRNA 32920 56152 . + . FI_gene_label "ERBB4^ENSG00000178568.15" ; ID "CEP43--ERBB4^ENST00000260943.10" ; Parent "CEP43--ERBB4^ERBB4^ENSG00000178568.15" ; exon_id "ENSE00001775290.1" ; exon_number 1 ; gene_id "CEP43--ERBB4^ERBB4^ENSG00000178568.15" ; gene_name ERBB4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133012.6" ; havana_transcript "OTTHUMT00000336978.3" ; hgnc_id "HGNC:3432" ; level 2 ; orig_coord_info "chr2,212538449,212538529,-" ; protein_id "ENSP00000260943.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "CEP43--ERBB4^ENST00000260943.10" ; transcript_name "ERBB4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CEP43--ERBB4 HAVANA gene 1092 15349 . + . FI_gene_label "CEP43^ENSG00000213066.13" ; ID "CEP43--ERBB4^CEP43^ENSG00000213066.13" ; ccdsid "CCDS5297.1" ; exon_id "ENSE00001934670.1" ; exon_number 1 ; gene_id "CEP43--ERBB4^CEP43^ENSG00000213066.13" ; gene_name CEP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016011.4" ; havana_transcript "OTTHUMT00000043100.1" ; hgnc_id "HGNC:17012" ; level 2 ; orig_coord_info "chr6,166999413,166999514,+" ; protein_id "ENSP00000230248.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "CEP43--ERBB4^ENST00000349556.4" ; transcript_name "CEP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP43--ERBB4 HAVANA mRNA 1092 15349 . + . FI_gene_label "CEP43^ENSG00000213066.13" ; ID "CEP43--ERBB4^ENST00000349556.4" ; Parent "CEP43--ERBB4^CEP43^ENSG00000213066.13" ; ccdsid "CCDS5297.1" ; exon_id "ENSE00001934670.1" ; exon_number 1 ; gene_id "CEP43--ERBB4^CEP43^ENSG00000213066.13" ; gene_name CEP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016011.4" ; havana_transcript "OTTHUMT00000043100.1" ; hgnc_id "HGNC:17012" ; level 2 ; orig_coord_info "chr6,166999413,166999514,+" ; protein_id "ENSP00000230248.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "CEP43--ERBB4^ENST00000349556.4" ; transcript_name "CEP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLINT1--TTC1 HAVANA gene 20940 30851 . + . FI_gene_label "TTC1^ENSG00000113312.11" ; ID "CLINT1--TTC1^TTC1^ENSG00000113312.11" ; ccdsid "CCDS4348.1" ; exon_id "ENSE00000972667.1" ; exon_number 2 ; gene_id "CLINT1--TTC1^TTC1^ENSG00000113312.11" ; gene_name TTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130326.5" ; havana_transcript "OTTHUMT00000252675.4" ; hgnc_id "HGNC:12391" ; level 2 ; orig_coord_info "chr5,160010529,160010858,+" ; protein_id "ENSP00000231238.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLINT1--TTC1^ENST00000231238.10" ; transcript_name "TTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLINT1--TTC1 HAVANA mRNA 20940 30851 . + . FI_gene_label "TTC1^ENSG00000113312.11" ; ID "CLINT1--TTC1^ENST00000231238.10" ; Parent "CLINT1--TTC1^TTC1^ENSG00000113312.11" ; ccdsid "CCDS4348.1" ; exon_id "ENSE00000972667.1" ; exon_number 2 ; gene_id "CLINT1--TTC1^TTC1^ENSG00000113312.11" ; gene_name TTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130326.5" ; havana_transcript "OTTHUMT00000252675.4" ; hgnc_id "HGNC:12391" ; level 2 ; orig_coord_info "chr5,160010529,160010858,+" ; protein_id "ENSP00000231238.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLINT1--TTC1^ENST00000231238.10" ; transcript_name "TTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLINT1--TTC1 HAVANA gene 1001 17909 . + . FI_gene_label "CLINT1^ENSG00000113282.14" ; ID "CLINT1--TTC1^CLINT1^ENSG00000113282.14" ; ccdsid "CCDS47330.1" ; exon_id "ENSE00002101605.2" ; exon_number 1 ; gene_id "CLINT1--TTC1^CLINT1^ENSG00000113282.14" ; gene_name CLINT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163527.3" ; havana_transcript "OTTHUMT00000374001.1" ; hgnc_id "HGNC:23186" ; level 2 ; orig_coord_info "chr5,157858930,157858970,-" ; protein_id "ENSP00000388340.2" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "CLINT1--TTC1^ENST00000411809.7" ; transcript_name "CLINT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLINT1--TTC1 HAVANA mRNA 1001 17909 . + . FI_gene_label "CLINT1^ENSG00000113282.14" ; ID "CLINT1--TTC1^ENST00000411809.7" ; Parent "CLINT1--TTC1^CLINT1^ENSG00000113282.14" ; ccdsid "CCDS47330.1" ; exon_id "ENSE00002101605.2" ; exon_number 1 ; gene_id "CLINT1--TTC1^CLINT1^ENSG00000113282.14" ; gene_name CLINT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163527.3" ; havana_transcript "OTTHUMT00000374001.1" ; hgnc_id "HGNC:23186" ; level 2 ; orig_coord_info "chr5,157858930,157858970,-" ; protein_id "ENSP00000388340.2" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "CLINT1--TTC1^ENST00000411809.7" ; transcript_name "CLINT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLTC--ZFPM2 HAVANA gene 1207 35742 . + . FI_gene_label "CLTC^ENSG00000141367.12" ; ID "CLTC--ZFPM2^CLTC^ENSG00000141367.12" ; ccdsid "CCDS32696.1" ; exon_id "ENSE00003895422.1" ; exon_number 1 ; gene_id "CLTC--ZFPM2^CLTC^ENSG00000141367.12" ; gene_name CLTC ; gene_type protein_coding ; havana_gene "OTTHUMG00000134279.5" ; havana_transcript "OTTHUMT00000258859.2" ; hgnc_id "HGNC:2092" ; level 2 ; orig_coord_info "chr17,59620132,59620173,+" ; protein_id "ENSP00000269122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--ZFPM2^ENST00000269122.8" ; transcript_name "CLTC-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLTC--ZFPM2 HAVANA mRNA 1207 35742 . + . FI_gene_label "CLTC^ENSG00000141367.12" ; ID "CLTC--ZFPM2^ENST00000269122.8" ; Parent "CLTC--ZFPM2^CLTC^ENSG00000141367.12" ; ccdsid "CCDS32696.1" ; exon_id "ENSE00003895422.1" ; exon_number 1 ; gene_id "CLTC--ZFPM2^CLTC^ENSG00000141367.12" ; gene_name CLTC ; gene_type protein_coding ; havana_gene "OTTHUMG00000134279.5" ; havana_transcript "OTTHUMT00000258859.2" ; hgnc_id "HGNC:2092" ; level 2 ; orig_coord_info "chr17,59620132,59620173,+" ; protein_id "ENSP00000269122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--ZFPM2^ENST00000269122.8" ; transcript_name "CLTC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLTC--ZFPM2 HAVANA gene 47812 70210 . + . FI_gene_label "ZFPM2^ENSG00000169946.14" ; ID "CLTC--ZFPM2^ZFPM2^ENSG00000169946.14" ; ccdsid "CCDS47908.1" ; exon_id "ENSE00001549408.3" ; exon_number 1 ; gene_id "CLTC--ZFPM2^ZFPM2^ENSG00000169946.14" ; gene_name ZFPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164818.5" ; havana_transcript "OTTHUMT00000380614.2" ; hgnc_id "HGNC:16700" ; level 2 ; orig_coord_info "chr8,105318942,105318981,+" ; protein_id "ENSP00000384179.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--ZFPM2^ENST00000407775.7" ; transcript_name "ZFPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLTC--ZFPM2 HAVANA mRNA 47812 70210 . + . FI_gene_label "ZFPM2^ENSG00000169946.14" ; ID "CLTC--ZFPM2^ENST00000407775.7" ; Parent "CLTC--ZFPM2^ZFPM2^ENSG00000169946.14" ; ccdsid "CCDS47908.1" ; exon_id "ENSE00001549408.3" ; exon_number 1 ; gene_id "CLTC--ZFPM2^ZFPM2^ENSG00000169946.14" ; gene_name ZFPM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164818.5" ; havana_transcript "OTTHUMT00000380614.2" ; hgnc_id "HGNC:16700" ; level 2 ; orig_coord_info "chr8,105318942,105318981,+" ; protein_id "ENSP00000384179.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--ZFPM2^ENST00000407775.7" ; transcript_name "ZFPM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DPYS--GRID2 HAVANA gene 20695 50868 . + . FI_gene_label "GRID2^ENSG00000152208.13" ; ID "DPYS--GRID2^GRID2^ENSG00000152208.13" ; ccdsid "CCDS3637.1" ; exon_id "ENSE00002056780.3" ; exon_number 1 ; gene_id "DPYS--GRID2^GRID2^ENSG00000152208.13" ; gene_name GRID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130975.8" ; havana_transcript "OTTHUMT00000253588.4" ; hgnc_id "HGNC:4576" ; level 2 ; orig_coord_info "chr4,92304657,92304744,+" ; protein_id "ENSP00000282020.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "DPYS--GRID2^ENST00000282020.9" ; transcript_name "GRID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DPYS--GRID2 HAVANA mRNA 20695 50868 . + . FI_gene_label "GRID2^ENSG00000152208.13" ; ID "DPYS--GRID2^ENST00000282020.9" ; Parent "DPYS--GRID2^GRID2^ENSG00000152208.13" ; ccdsid "CCDS3637.1" ; exon_id "ENSE00002056780.3" ; exon_number 1 ; gene_id "DPYS--GRID2^GRID2^ENSG00000152208.13" ; gene_name GRID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130975.8" ; havana_transcript "OTTHUMT00000253588.4" ; hgnc_id "HGNC:4576" ; level 2 ; orig_coord_info "chr4,92304657,92304744,+" ; protein_id "ENSP00000282020.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "DPYS--GRID2^ENST00000282020.9" ; transcript_name "GRID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DPYS--GRID2 HAVANA gene 1001 15221 . + . FI_gene_label "DPYS^ENSG00000147647.13" ; ID "DPYS--GRID2^DPYS^ENSG00000147647.13" ; ccdsid "CCDS6302.1" ; exon_id "ENSE00002092993.2" ; exon_number 1 ; gene_id "DPYS--GRID2^DPYS^ENSG00000147647.13" ; gene_name DPYS ; gene_type protein_coding ; havana_gene "OTTHUMG00000164891.5" ; havana_transcript "OTTHUMT00000380814.2" ; hgnc_id "HGNC:3013" ; level 2 ; orig_coord_info "chr8,104466657,104466920,-" ; protein_id "ENSP00000276651.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DPYS--GRID2^ENST00000351513.7" ; transcript_name "DPYS-201" ; transcript_support_level 1 ; transcript_type protein_coding
DPYS--GRID2 HAVANA mRNA 1001 15221 . + . FI_gene_label "DPYS^ENSG00000147647.13" ; ID "DPYS--GRID2^ENST00000351513.7" ; Parent "DPYS--GRID2^DPYS^ENSG00000147647.13" ; ccdsid "CCDS6302.1" ; exon_id "ENSE00002092993.2" ; exon_number 1 ; gene_id "DPYS--GRID2^DPYS^ENSG00000147647.13" ; gene_name DPYS ; gene_type protein_coding ; havana_gene "OTTHUMG00000164891.5" ; havana_transcript "OTTHUMT00000380814.2" ; hgnc_id "HGNC:3013" ; level 2 ; orig_coord_info "chr8,104466657,104466920,-" ; protein_id "ENSP00000276651.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DPYS--GRID2^ENST00000351513.7" ; transcript_name "DPYS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXL20--AC068413.1 HAVANA gene 1898 26528 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "FBXL20--AC068413.1^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "FBXL20--AC068413.1^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--AC068413.1^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXL20--AC068413.1 HAVANA mRNA 1898 26528 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "FBXL20--AC068413.1^ENST00000264658.11" ; Parent "FBXL20--AC068413.1^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "FBXL20--AC068413.1^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--AC068413.1^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXL20--LINC00536 HAVANA gene 1898 26528 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "FBXL20--LINC00536^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "FBXL20--LINC00536^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--LINC00536^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXL20--LINC00536 HAVANA mRNA 1898 26528 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "FBXL20--LINC00536^ENST00000264658.11" ; Parent "FBXL20--LINC00536^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "FBXL20--LINC00536^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--LINC00536^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IKZF3--BRINP1 HAVANA gene 21247 31716 . + . FI_gene_label "BRINP1^ENSG00000078725.13" ; ID "IKZF3--BRINP1^BRINP1^ENSG00000078725.13" ; ccdsid "CCDS6822.1" ; exon_id "ENSE00001168335.1" ; exon_number 2 ; gene_id "IKZF3--BRINP1^BRINP1^ENSG00000078725.13" ; gene_name BRINP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021020.3" ; havana_transcript "OTTHUMT00000055440.3" ; hgnc_id "HGNC:2687" ; level 2 ; orig_coord_info "chr9,119313138,119313355,-" ; protein_id "ENSP00000265922.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IKZF3--BRINP1^ENST00000265922.8" ; transcript_name "BRINP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IKZF3--BRINP1 HAVANA mRNA 21247 31716 . + . FI_gene_label "BRINP1^ENSG00000078725.13" ; ID "IKZF3--BRINP1^ENST00000265922.8" ; Parent "IKZF3--BRINP1^BRINP1^ENSG00000078725.13" ; ccdsid "CCDS6822.1" ; exon_id "ENSE00001168335.1" ; exon_number 2 ; gene_id "IKZF3--BRINP1^BRINP1^ENSG00000078725.13" ; gene_name BRINP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021020.3" ; havana_transcript "OTTHUMT00000055440.3" ; hgnc_id "HGNC:2687" ; level 2 ; orig_coord_info "chr9,119313138,119313355,-" ; protein_id "ENSP00000265922.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IKZF3--BRINP1^ENST00000265922.8" ; transcript_name "BRINP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IKZF3--BRINP1 HAVANA gene 1125 10680 . + . FI_gene_label "IKZF3^ENSG00000161405.17" ; ID "IKZF3--BRINP1^IKZF3^ENSG00000161405.17" ; exon_id "ENSE00002692875.1" ; exon_number 1 ; gene_id "IKZF3--BRINP1^IKZF3^ENSG00000161405.17" ; gene_name IKZF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133250.5" ; havana_transcript "OTTHUMT00000257011.2" ; hgnc_id "HGNC:13178" ; level 2 ; orig_coord_info "chr17,39864120,39864126,-" ; protein_id "ENSP00000462791.1" ; transcript_id "IKZF3--BRINP1^ENST00000293068.9" ; transcript_name "IKZF3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
IKZF3--BRINP1 HAVANA mRNA 1125 10680 . + . FI_gene_label "IKZF3^ENSG00000161405.17" ; ID "IKZF3--BRINP1^ENST00000293068.9" ; Parent "IKZF3--BRINP1^IKZF3^ENSG00000161405.17" ; exon_id "ENSE00002692875.1" ; exon_number 1 ; gene_id "IKZF3--BRINP1^IKZF3^ENSG00000161405.17" ; gene_name IKZF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133250.5" ; havana_transcript "OTTHUMT00000257011.2" ; hgnc_id "HGNC:13178" ; level 2 ; orig_coord_info "chr17,39864120,39864126,-" ; protein_id "ENSP00000462791.1" ; transcript_id "IKZF3--BRINP1^ENST00000293068.9" ; transcript_name "IKZF3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
IKZF3--TUBB4BP6 HAVANA gene 1125 10680 . + . FI_gene_label "IKZF3^ENSG00000161405.17" ; ID "IKZF3--TUBB4BP6^IKZF3^ENSG00000161405.17" ; exon_id "ENSE00002692875.1" ; exon_number 1 ; gene_id "IKZF3--TUBB4BP6^IKZF3^ENSG00000161405.17" ; gene_name IKZF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133250.5" ; havana_transcript "OTTHUMT00000257011.2" ; hgnc_id "HGNC:13178" ; level 2 ; orig_coord_info "chr17,39864120,39864126,-" ; protein_id "ENSP00000462791.1" ; transcript_id "IKZF3--TUBB4BP6^ENST00000293068.9" ; transcript_name "IKZF3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
IKZF3--TUBB4BP6 HAVANA mRNA 1125 10680 . + . FI_gene_label "IKZF3^ENSG00000161405.17" ; ID "IKZF3--TUBB4BP6^ENST00000293068.9" ; Parent "IKZF3--TUBB4BP6^IKZF3^ENSG00000161405.17" ; exon_id "ENSE00002692875.1" ; exon_number 1 ; gene_id "IKZF3--TUBB4BP6^IKZF3^ENSG00000161405.17" ; gene_name IKZF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133250.5" ; havana_transcript "OTTHUMT00000257011.2" ; hgnc_id "HGNC:13178" ; level 2 ; orig_coord_info "chr17,39864120,39864126,-" ; protein_id "ENSP00000462791.1" ; transcript_id "IKZF3--TUBB4BP6^ENST00000293068.9" ; transcript_name "IKZF3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
LHX2--GGTA1 HAVANA gene 2029 8945 . + . FI_gene_label "LHX2^ENSG00000106689.11" ; ID "LHX2--GGTA1^LHX2^ENSG00000106689.11" ; ccdsid "CCDS6853.1" ; exon_id "ENSE00001461029.2" ; exon_number 1 ; gene_id "LHX2--GGTA1^LHX2^ENSG00000106689.11" ; gene_name LHX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020647.6" ; havana_transcript "OTTHUMT00000054010.4" ; hgnc_id "HGNC:6594" ; level 2 ; orig_coord_info "chr9,124012349,124012468,+" ; protein_id "ENSP00000362717.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHX2--GGTA1^ENST00000373615.9" ; transcript_name "LHX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LHX2--GGTA1 HAVANA mRNA 2029 8945 . + . FI_gene_label "LHX2^ENSG00000106689.11" ; ID "LHX2--GGTA1^ENST00000373615.9" ; Parent "LHX2--GGTA1^LHX2^ENSG00000106689.11" ; ccdsid "CCDS6853.1" ; exon_id "ENSE00001461029.2" ; exon_number 1 ; gene_id "LHX2--GGTA1^LHX2^ENSG00000106689.11" ; gene_name LHX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020647.6" ; havana_transcript "OTTHUMT00000054010.4" ; hgnc_id "HGNC:6594" ; level 2 ; orig_coord_info "chr9,124012349,124012468,+" ; protein_id "ENSP00000362717.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHX2--GGTA1^ENST00000373615.9" ; transcript_name "LHX2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LHX2--GGTA1 HAVANA gene 11974 19517 . + . FI_gene_label "GGTA1^ENSG00000204136.12" ; ID "LHX2--GGTA1^GGTA1^ENSG00000204136.12" ; exon_id "ENSE00002315241.1" ; exon_number 3 ; gene_id "LHX2--GGTA1^GGTA1^ENSG00000204136.12" ; gene_name GGTA1 ; gene_type protein_coding ; hgnc_id "HGNC:4253" ; level 2 ; orig_coord_info "chr9,121467843,121467922,-" ; protein_id "ENSP00000504423.1" ; tag basic appris_principal_1 ; transcript_id "LHX2--GGTA1^ENST00000373793.3" ; transcript_name "GGTA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LHX2--GGTA1 HAVANA mRNA 11974 19517 . + . FI_gene_label "GGTA1^ENSG00000204136.12" ; ID "LHX2--GGTA1^ENST00000373793.3" ; Parent "LHX2--GGTA1^GGTA1^ENSG00000204136.12" ; exon_id "ENSE00002315241.1" ; exon_number 3 ; gene_id "LHX2--GGTA1^GGTA1^ENSG00000204136.12" ; gene_name GGTA1 ; gene_type protein_coding ; hgnc_id "HGNC:4253" ; level 2 ; orig_coord_info "chr9,121467843,121467922,-" ; protein_id "ENSP00000504423.1" ; tag basic appris_principal_1 ; transcript_id "LHX2--GGTA1^ENST00000373793.3" ; transcript_name "GGTA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP12--AC106881.1 HAVANA gene 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--AC106881.1^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--AC106881.1^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--AC106881.1^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP12--AC106881.1 HAVANA mRNA 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--AC106881.1^ENST00000276654.10" ; Parent "LRP12--AC106881.1^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--AC106881.1^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--AC106881.1^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP12--LINC01837 HAVANA gene 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--LINC01837^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--LINC01837^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--LINC01837^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP12--LINC01837 HAVANA mRNA 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--LINC01837^ENST00000276654.10" ; Parent "LRP12--LINC01837^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--LINC01837^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--LINC01837^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP12--RPL30P6 HAVANA gene 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--RPL30P6^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--RPL30P6^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--RPL30P6^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP12--RPL30P6 HAVANA mRNA 1001 16835 . + . FI_gene_label "LRP12^ENSG00000147650.12" ; ID "LRP12--RPL30P6^ENST00000276654.10" ; Parent "LRP12--RPL30P6^LRP12^ENSG00000147650.12" ; ccdsid "CCDS6303.1" ; exon_id "ENSE00002115998.2" ; exon_number 1 ; gene_id "LRP12--RPL30P6^LRP12^ENSG00000147650.12" ; gene_name LRP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164892.6" ; havana_transcript "OTTHUMT00000380821.1" ; hgnc_id "HGNC:31708" ; level 2 ; orig_coord_info "chr8,104588819,104588897,-" ; protein_id "ENSP00000276654.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRP12--RPL30P6^ENST00000276654.10" ; transcript_name "LRP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFX1--GSN HAVANA gene 1034 18325 . + . FI_gene_label "NFX1^ENSG00000086102.19" ; ID "NFX1--GSN^NFX1^ENSG00000086102.19" ; ccdsid "CCDS6540.1" ; exon_id "ENSE00001811099.1" ; exon_number 1 ; gene_id "NFX1--GSN^NFX1^ENSG00000086102.19" ; gene_name NFX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019772.6" ; havana_transcript "OTTHUMT00000052072.4" ; hgnc_id "HGNC:7803" ; level 2 ; orig_coord_info "chr9,33290573,33290597,+" ; protein_id "ENSP00000317695.6" ; tag basic CCDS ; transcript_id "NFX1--GSN^ENST00000318524.6" ; transcript_name "NFX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFX1--GSN HAVANA mRNA 1034 18325 . + . FI_gene_label "NFX1^ENSG00000086102.19" ; ID "NFX1--GSN^ENST00000318524.6" ; Parent "NFX1--GSN^NFX1^ENSG00000086102.19" ; ccdsid "CCDS6540.1" ; exon_id "ENSE00001811099.1" ; exon_number 1 ; gene_id "NFX1--GSN^NFX1^ENSG00000086102.19" ; gene_name NFX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019772.6" ; havana_transcript "OTTHUMT00000052072.4" ; hgnc_id "HGNC:7803" ; level 2 ; orig_coord_info "chr9,33290573,33290597,+" ; protein_id "ENSP00000317695.6" ; tag basic CCDS ; transcript_id "NFX1--GSN^ENST00000318524.6" ; transcript_name "NFX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFX1--GSN HAVANA gene 61598 66236 . + . FI_gene_label "GSN^ENSG00000148180.21" ; ID "NFX1--GSN^GSN^ENSG00000148180.21" ; exon_id "ENSE00001461614.1" ; exon_number 1 ; gene_id "NFX1--GSN^GSN^ENSG00000148180.21" ; gene_name GSN ; gene_type protein_coding ; havana_gene "OTTHUMG00000020584.8" ; havana_transcript "OTTHUMT00000053870.2" ; hgnc_id "HGNC:4620" ; level 2 ; orig_coord_info "chr9,121326582,121326781,+" ; protein_id "ENSP00000362912.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NFX1--GSN^ENST00000373806.1" ; transcript_name "GSN-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
NFX1--GSN HAVANA mRNA 61598 66236 . + . FI_gene_label "GSN^ENSG00000148180.21" ; ID "NFX1--GSN^ENST00000373806.1" ; Parent "NFX1--GSN^GSN^ENSG00000148180.21" ; exon_id "ENSE00001461614.1" ; exon_number 1 ; gene_id "NFX1--GSN^GSN^ENSG00000148180.21" ; gene_name GSN ; gene_type protein_coding ; havana_gene "OTTHUMG00000020584.8" ; havana_transcript "OTTHUMT00000053870.2" ; hgnc_id "HGNC:4620" ; level 2 ; orig_coord_info "chr9,121326582,121326781,+" ; protein_id "ENSP00000362912.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NFX1--GSN^ENST00000373806.1" ; transcript_name "GSN-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ENST00000264990.11" ; Parent "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^ENST00000337331.10" ; Parent "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSD3--ADAM9 HAVANA gene 1001 17199 . + . FI_gene_label "NSD3^ENSG00000147548.17" ; ID "NSD3--ADAM9^NSD3^ENSG00000147548.17" ; ccdsid "CCDS6105.1" ; exon_id "ENSE00002262898.1" ; exon_number 2 ; gene_id "NSD3--ADAM9^NSD3^ENSG00000147548.17" ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10" ; havana_transcript "OTTHUMT00000381925.1" ; hgnc_id "HGNC:12767" ; level 2 ; orig_coord_info "chr8,38347497,38348171,-" ; protein_id "ENSP00000313410.3" ; tag basic CCDS ; transcript_id "NSD3--ADAM9^ENST00000316985.7" ; transcript_name "NSD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NSD3--ADAM9 HAVANA mRNA 1001 17199 . + . FI_gene_label "NSD3^ENSG00000147548.17" ; ID "NSD3--ADAM9^ENST00000316985.7" ; Parent "NSD3--ADAM9^NSD3^ENSG00000147548.17" ; ccdsid "CCDS6105.1" ; exon_id "ENSE00002262898.1" ; exon_number 2 ; gene_id "NSD3--ADAM9^NSD3^ENSG00000147548.17" ; gene_name NSD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165115.10" ; havana_transcript "OTTHUMT00000381925.1" ; hgnc_id "HGNC:12767" ; level 2 ; orig_coord_info "chr8,38347497,38348171,-" ; protein_id "ENSP00000313410.3" ; tag basic CCDS ; transcript_id "NSD3--ADAM9^ENST00000316985.7" ; transcript_name "NSD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSD3--ADAM9 HAVANA gene 41563 79001 . + . FI_gene_label "ADAM9^ENSG00000168615.13" ; ID "NSD3--ADAM9^ADAM9^ENSG00000168615.13" ; exon_id "ENSE00001854428.1" ; exon_number 1 ; gene_id "NSD3--ADAM9^ADAM9^ENSG00000168615.13" ; gene_name ADAM9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159783.5" ; havana_transcript "OTTHUMT00000357297.1" ; hgnc_id "HGNC:216" ; level 2 ; orig_coord_info "chr8,38997064,38997160,+" ; protein_id "ENSP00000369249.3" ; transcript_id "NSD3--ADAM9^ENST00000379917.7" ; transcript_name "ADAM9-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
NSD3--ADAM9 HAVANA mRNA 41563 79001 . + . FI_gene_label "ADAM9^ENSG00000168615.13" ; ID "NSD3--ADAM9^ENST00000379917.7" ; Parent "NSD3--ADAM9^ADAM9^ENSG00000168615.13" ; exon_id "ENSE00001854428.1" ; exon_number 1 ; gene_id "NSD3--ADAM9^ADAM9^ENSG00000168615.13" ; gene_name ADAM9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159783.5" ; havana_transcript "OTTHUMT00000357297.1" ; hgnc_id "HGNC:216" ; level 2 ; orig_coord_info "chr8,38997064,38997160,+" ; protein_id "ENSP00000369249.3" ; transcript_id "NSD3--ADAM9^ENST00000379917.7" ; transcript_name "ADAM9-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PPP4R1--RNU6-245P HAVANA gene 1736 25741 . + . FI_gene_label "PPP4R1^ENSG00000154845.16" ; ID "PPP4R1--RNU6-245P^PPP4R1^ENSG00000154845.16" ; exon_id "ENSE00002239833.1" ; exon_number 1 ; gene_id "PPP4R1--RNU6-245P^PPP4R1^ENSG00000154845.16" ; gene_name PPP4R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137466.4" ; havana_transcript "OTTHUMT00000443214.1" ; hgnc_id "HGNC:9320" ; level 2 ; orig_coord_info "chr18,9614478,9614484,-" ; protein_id "ENSP00000285124.8" ; transcript_id "PPP4R1--RNU6-245P^ENST00000285124.12" ; transcript_name "PPP4R1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
PPP4R1--RNU6-245P HAVANA mRNA 1736 25741 . + . FI_gene_label "PPP4R1^ENSG00000154845.16" ; ID "PPP4R1--RNU6-245P^ENST00000285124.12" ; Parent "PPP4R1--RNU6-245P^PPP4R1^ENSG00000154845.16" ; exon_id "ENSE00002239833.1" ; exon_number 1 ; gene_id "PPP4R1--RNU6-245P^PPP4R1^ENSG00000154845.16" ; gene_name PPP4R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137466.4" ; havana_transcript "OTTHUMT00000443214.1" ; hgnc_id "HGNC:9320" ; level 2 ; orig_coord_info "chr18,9614478,9614484,-" ; protein_id "ENSP00000285124.8" ; transcript_id "PPP4R1--RNU6-245P^ENST00000285124.12" ; transcript_name "PPP4R1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PPP4R1--RPL31P63 HAVANA gene 1736 25741 . + . FI_gene_label "PPP4R1^ENSG00000154845.16" ; ID "PPP4R1--RPL31P63^PPP4R1^ENSG00000154845.16" ; exon_id "ENSE00002239833.1" ; exon_number 1 ; gene_id "PPP4R1--RPL31P63^PPP4R1^ENSG00000154845.16" ; gene_name PPP4R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137466.4" ; havana_transcript "OTTHUMT00000443214.1" ; hgnc_id "HGNC:9320" ; level 2 ; orig_coord_info "chr18,9614478,9614484,-" ; protein_id "ENSP00000285124.8" ; transcript_id "PPP4R1--RPL31P63^ENST00000285124.12" ; transcript_name "PPP4R1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
PPP4R1--RPL31P63 HAVANA mRNA 1736 25741 . + . FI_gene_label "PPP4R1^ENSG00000154845.16" ; ID "PPP4R1--RPL31P63^ENST00000285124.12" ; Parent "PPP4R1--RPL31P63^PPP4R1^ENSG00000154845.16" ; exon_id "ENSE00002239833.1" ; exon_number 1 ; gene_id "PPP4R1--RPL31P63^PPP4R1^ENSG00000154845.16" ; gene_name PPP4R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137466.4" ; havana_transcript "OTTHUMT00000443214.1" ; hgnc_id "HGNC:9320" ; level 2 ; orig_coord_info "chr18,9614478,9614484,-" ; protein_id "ENSP00000285124.8" ; transcript_id "PPP4R1--RPL31P63^ENST00000285124.12" ; transcript_name "PPP4R1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PSMD11--RIMS2 HAVANA gene 1132 17254 . + . FI_gene_label "PSMD11^ENSG00000108671.11" ; ID "PSMD11--RIMS2^PSMD11^ENSG00000108671.11" ; ccdsid "CCDS11272.1" ; exon_id "ENSE00002713989.2" ; exon_number 1 ; gene_id "PSMD11--RIMS2^PSMD11^ENSG00000108671.11" ; gene_name PSMD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132811.7" ; havana_transcript "OTTHUMT00000256252.4" ; hgnc_id "HGNC:9556" ; level 2 ; orig_coord_info "chr17,32444524,32444614,+" ; protein_id "ENSP00000261712.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PSMD11--RIMS2^ENST00000261712.8" ; transcript_name "PSMD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSMD11--RIMS2 HAVANA mRNA 1132 17254 . + . FI_gene_label "PSMD11^ENSG00000108671.11" ; ID "PSMD11--RIMS2^ENST00000261712.8" ; Parent "PSMD11--RIMS2^PSMD11^ENSG00000108671.11" ; ccdsid "CCDS11272.1" ; exon_id "ENSE00002713989.2" ; exon_number 1 ; gene_id "PSMD11--RIMS2^PSMD11^ENSG00000108671.11" ; gene_name PSMD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132811.7" ; havana_transcript "OTTHUMT00000256252.4" ; hgnc_id "HGNC:9556" ; level 2 ; orig_coord_info "chr17,32444524,32444614,+" ; protein_id "ENSP00000261712.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PSMD11--RIMS2^ENST00000261712.8" ; transcript_name "PSMD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSMD11--RIMS2 HAVANA gene 28983 68615 . + . FI_gene_label "RIMS2^ENSG00000176406.23" ; ID "PSMD11--RIMS2^RIMS2^ENSG00000176406.23" ; ccdsid "CCDS64948.1" ; exon_id "ENSE00002191590.1" ; exon_number 1 ; gene_id "PSMD11--RIMS2^RIMS2^ENSG00000176406.23" ; gene_name RIMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162097.12" ; havana_transcript "OTTHUMT00000367214.5" ; hgnc_id "HGNC:17283" ; level 2 ; orig_coord_info "chr8,103819508,103819629,+" ; protein_id "ENSP00000262231.10" ; tag basic CCDS ; transcript_id "PSMD11--RIMS2^ENST00000262231.14" ; transcript_name "RIMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSMD11--RIMS2 HAVANA mRNA 28983 68615 . + . FI_gene_label "RIMS2^ENSG00000176406.23" ; ID "PSMD11--RIMS2^ENST00000262231.14" ; Parent "PSMD11--RIMS2^RIMS2^ENSG00000176406.23" ; ccdsid "CCDS64948.1" ; exon_id "ENSE00002191590.1" ; exon_number 1 ; gene_id "PSMD11--RIMS2^RIMS2^ENSG00000176406.23" ; gene_name RIMS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162097.12" ; havana_transcript "OTTHUMT00000367214.5" ; hgnc_id "HGNC:17283" ; level 2 ; orig_coord_info "chr8,103819508,103819629,+" ; protein_id "ENSP00000262231.10" ; tag basic CCDS ; transcript_id "PSMD11--RIMS2^ENST00000262231.14" ; transcript_name "RIMS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS11--UQCRFS1 HAVANA gene 1070 4084 . + . FI_gene_label "RPS11^ENSG00000142534.7" ; ID "RPS11--UQCRFS1^RPS11^ENSG00000142534.7" ; ccdsid "CCDS12769.1" ; exon_id "ENSE00001116454.4" ; exon_number 1 ; gene_id "RPS11--UQCRFS1^RPS11^ENSG00000142534.7" ; gene_name RPS11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183156.4" ; havana_transcript "OTTHUMT00000465288.2" ; hgnc_id "HGNC:10384" ; level 2 ; orig_coord_info "chr19,49496457,49496471,+" ; protein_id "ENSP00000270625.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS11--UQCRFS1^ENST00000270625.7" ; transcript_name "RPS11-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS11--UQCRFS1 HAVANA mRNA 1070 4084 . + . FI_gene_label "RPS11^ENSG00000142534.7" ; ID "RPS11--UQCRFS1^ENST00000270625.7" ; Parent "RPS11--UQCRFS1^RPS11^ENSG00000142534.7" ; ccdsid "CCDS12769.1" ; exon_id "ENSE00001116454.4" ; exon_number 1 ; gene_id "RPS11--UQCRFS1^RPS11^ENSG00000142534.7" ; gene_name RPS11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183156.4" ; havana_transcript "OTTHUMT00000465288.2" ; hgnc_id "HGNC:10384" ; level 2 ; orig_coord_info "chr19,49496457,49496471,+" ; protein_id "ENSP00000270625.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS11--UQCRFS1^ENST00000270625.7" ; transcript_name "RPS11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS11--UQCRFS1 HAVANA gene 7085 11170 . + . FI_gene_label "UQCRFS1^ENSG00000169021.6" ; ID "RPS11--UQCRFS1^UQCRFS1^ENSG00000169021.6" ; ccdsid "CCDS12415.1" ; exon_id "ENSE00001124397.6" ; exon_number 1 ; gene_id "RPS11--UQCRFS1^UQCRFS1^ENSG00000169021.6" ; gene_name UQCRFS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181997.3" ; havana_transcript "OTTHUMT00000458563.3" ; hgnc_id "HGNC:12587" ; level 2 ; orig_coord_info "chr19,29212905,29213118,-" ; protein_id "ENSP00000306397.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS11--UQCRFS1^ENST00000304863.6" ; transcript_name "UQCRFS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS11--UQCRFS1 HAVANA mRNA 7085 11170 . + . FI_gene_label "UQCRFS1^ENSG00000169021.6" ; ID "RPS11--UQCRFS1^ENST00000304863.6" ; Parent "RPS11--UQCRFS1^UQCRFS1^ENSG00000169021.6" ; ccdsid "CCDS12415.1" ; exon_id "ENSE00001124397.6" ; exon_number 1 ; gene_id "RPS11--UQCRFS1^UQCRFS1^ENSG00000169021.6" ; gene_name UQCRFS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181997.3" ; havana_transcript "OTTHUMT00000458563.3" ; hgnc_id "HGNC:12587" ; level 2 ; orig_coord_info "chr19,29212905,29213118,-" ; protein_id "ENSP00000306397.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS11--UQCRFS1^ENST00000304863.6" ; transcript_name "UQCRFS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRM2B--VPS13B HAVANA gene 1001 15063 . + . FI_gene_label "RRM2B^ENSG00000048392.12" ; ID "RRM2B--VPS13B^RRM2B^ENSG00000048392.12" ; ccdsid "CCDS34932.1" ; exon_id "ENSE00001161985.2" ; exon_number 1 ; gene_id "RRM2B--VPS13B^RRM2B^ENSG00000048392.12" ; gene_name RRM2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000164776.7" ; havana_transcript "OTTHUMT00000380191.5" ; hgnc_id "HGNC:17296" ; level 2 ; orig_coord_info "chr8,102238827,102238874,-" ; protein_id "ENSP00000251810.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRM2B--VPS13B^ENST00000251810.8" ; transcript_name "RRM2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRM2B--VPS13B HAVANA mRNA 1001 15063 . + . FI_gene_label "RRM2B^ENSG00000048392.12" ; ID "RRM2B--VPS13B^ENST00000251810.8" ; Parent "RRM2B--VPS13B^RRM2B^ENSG00000048392.12" ; ccdsid "CCDS34932.1" ; exon_id "ENSE00001161985.2" ; exon_number 1 ; gene_id "RRM2B--VPS13B^RRM2B^ENSG00000048392.12" ; gene_name RRM2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000164776.7" ; havana_transcript "OTTHUMT00000380191.5" ; hgnc_id "HGNC:17296" ; level 2 ; orig_coord_info "chr8,102238827,102238874,-" ; protein_id "ENSP00000251810.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRM2B--VPS13B^ENST00000251810.8" ; transcript_name "RRM2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRM2B--VPS13B HAVANA gene 18064 36290 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "RRM2B--VPS13B^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "RRM2B--VPS13B^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "RRM2B--VPS13B^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRM2B--VPS13B HAVANA mRNA 18064 36290 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "RRM2B--VPS13B^ENST00000355155.5" ; Parent "RRM2B--VPS13B^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "RRM2B--VPS13B^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "RRM2B--VPS13B^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--AC034154.1 HAVANA gene 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--AC034154.1^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--AC034154.1^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--AC034154.1^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--AC034154.1 HAVANA mRNA 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--AC034154.1^ENST00000314727.9" ; Parent "SAMD12--AC034154.1^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--AC034154.1^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--AC034154.1^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--CA10 HAVANA gene 32599 48651 . + . FI_gene_label "CA10^ENSG00000154975.14" ; ID "SAMD12--CA10^CA10^ENSG00000154975.14" ; ccdsid "CCDS32684.1" ; exon_id "ENSE00001385786.3" ; exon_number 2 ; gene_id "SAMD12--CA10^CA10^ENSG00000154975.14" ; gene_name CA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177544.4" ; havana_transcript "OTTHUMT00000437480.1" ; hgnc_id "HGNC:1369" ; level 1 ; orig_coord_info "chr17,52157726,52157786,-" ; protein_id "ENSP00000285273.4" ; tag basic appris_principal_1 exp_conf CCDS ; transcript_id "SAMD12--CA10^ENST00000285273.8" ; transcript_name "CA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--CA10 HAVANA mRNA 32599 48651 . + . FI_gene_label "CA10^ENSG00000154975.14" ; ID "SAMD12--CA10^ENST00000285273.8" ; Parent "SAMD12--CA10^CA10^ENSG00000154975.14" ; ccdsid "CCDS32684.1" ; exon_id "ENSE00001385786.3" ; exon_number 2 ; gene_id "SAMD12--CA10^CA10^ENSG00000154975.14" ; gene_name CA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177544.4" ; havana_transcript "OTTHUMT00000437480.1" ; hgnc_id "HGNC:1369" ; level 1 ; orig_coord_info "chr17,52157726,52157786,-" ; protein_id "ENSP00000285273.4" ; tag basic appris_principal_1 exp_conf CCDS ; transcript_id "SAMD12--CA10^ENST00000285273.8" ; transcript_name "CA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--CA10 HAVANA gene 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--CA10^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--CA10^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--CA10^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--CA10 HAVANA mRNA 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--CA10^ENST00000314727.9" ; Parent "SAMD12--CA10^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--CA10^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--CA10^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--STPG2 HAVANA gene 32383 45426 . + . FI_gene_label "STPG2^ENSG00000163116.10" ; ID "SAMD12--STPG2^STPG2^ENSG00000163116.10" ; ccdsid "CCDS3645.1" ; exon_id "ENSE00001071788.4" ; exon_number 1 ; gene_id "SAMD12--STPG2^STPG2^ENSG00000163116.10" ; gene_name STPG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131009.4" ; havana_transcript "OTTHUMT00000253642.2" ; hgnc_id "HGNC:28712" ; level 2 ; orig_coord_info "chr4,98143042,98143150,-" ; protein_id "ENSP00000295268.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMD12--STPG2^ENST00000295268.4" ; transcript_name "STPG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--STPG2 HAVANA mRNA 32383 45426 . + . FI_gene_label "STPG2^ENSG00000163116.10" ; ID "SAMD12--STPG2^ENST00000295268.4" ; Parent "SAMD12--STPG2^STPG2^ENSG00000163116.10" ; ccdsid "CCDS3645.1" ; exon_id "ENSE00001071788.4" ; exon_number 1 ; gene_id "SAMD12--STPG2^STPG2^ENSG00000163116.10" ; gene_name STPG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131009.4" ; havana_transcript "OTTHUMT00000253642.2" ; hgnc_id "HGNC:28712" ; level 2 ; orig_coord_info "chr4,98143042,98143150,-" ; protein_id "ENSP00000295268.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMD12--STPG2^ENST00000295268.4" ; transcript_name "STPG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--STPG2 HAVANA gene 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--STPG2^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--STPG2^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--STPG2^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--STPG2 HAVANA mRNA 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--STPG2^ENST00000314727.9" ; Parent "SAMD12--STPG2^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--STPG2^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--STPG2^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--ZNF704 HAVANA gene 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--ZNF704^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--ZNF704^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--ZNF704^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--ZNF704 HAVANA mRNA 1150 12162 . + . FI_gene_label "SAMD12^ENSG00000177570.15" ; ID "SAMD12--ZNF704^ENST00000314727.9" ; Parent "SAMD12--ZNF704^SAMD12^ENSG00000177570.15" ; ccdsid "CCDS6325.1" ; exon_id "ENSE00002146278.2" ; exon_number 1 ; gene_id "SAMD12--ZNF704^SAMD12^ENSG00000177570.15" ; gene_name SAMD12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059817.6" ; havana_transcript "OTTHUMT00000132989.3" ; hgnc_id "HGNC:31750" ; level 2 ; orig_coord_info "chr8,118621804,118621816,-" ; protein_id "ENSP00000314173.4" ; tag basic MANE_Select CCDS ; transcript_id "SAMD12--ZNF704^ENST00000314727.9" ; transcript_name "SAMD12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD12--ZNF704 HAVANA gene 32383 60049 . + . FI_gene_label "ZNF704^ENSG00000164684.13" ; ID "SAMD12--ZNF704^ZNF704^ENSG00000164684.13" ; ccdsid "CCDS34913.1" ; exon_id "ENSE00001798298.1" ; exon_number 2 ; gene_id "SAMD12--ZNF704^ZNF704^ENSG00000164684.13" ; gene_name ZNF704 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164733.3" ; havana_transcript "OTTHUMT00000379964.2" ; hgnc_id "HGNC:32291" ; level 2 ; orig_coord_info "chr8,80821374,80821594,-" ; protein_id "ENSP00000331462.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMD12--ZNF704^ENST00000327835.7" ; transcript_name "ZNF704-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD12--ZNF704 HAVANA mRNA 32383 60049 . + . FI_gene_label "ZNF704^ENSG00000164684.13" ; ID "SAMD12--ZNF704^ENST00000327835.7" ; Parent "SAMD12--ZNF704^ZNF704^ENSG00000164684.13" ; ccdsid "CCDS34913.1" ; exon_id "ENSE00001798298.1" ; exon_number 2 ; gene_id "SAMD12--ZNF704^ZNF704^ENSG00000164684.13" ; gene_name ZNF704 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164733.3" ; havana_transcript "OTTHUMT00000379964.2" ; hgnc_id "HGNC:32291" ; level 2 ; orig_coord_info "chr8,80821374,80821594,-" ; protein_id "ENSP00000331462.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAMD12--ZNF704^ENST00000327835.7" ; transcript_name "ZNF704-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ST6GALNAC6--AL031073.2 HAVANA gene 4476 13405 . + . FI_gene_label "ST6GALNAC6^ENSG00000160408.15" ; ID "ST6GALNAC6--AL031073.2^ST6GALNAC6^ENSG00000160408.15" ; exon_id "ENSE00003630060.1" ; exon_number 2 ; gene_id "ST6GALNAC6--AL031073.2^ST6GALNAC6^ENSG00000160408.15" ; gene_name ST6GALNAC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020718.4" ; havana_transcript "OTTHUMT00000054280.1" ; hgnc_id "HGNC:23364" ; level 2 ; orig_coord_info "chr9,127897956,127897981,-" ; protein_id "ENSP00000291839.6" ; tag basic ; transcript_id "ST6GALNAC6--AL031073.2^ENST00000291839.10" ; transcript_name "ST6GALNAC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ST6GALNAC6--AL031073.2 HAVANA mRNA 4476 13405 . + . FI_gene_label "ST6GALNAC6^ENSG00000160408.15" ; ID "ST6GALNAC6--AL031073.2^ENST00000291839.10" ; Parent "ST6GALNAC6--AL031073.2^ST6GALNAC6^ENSG00000160408.15" ; exon_id "ENSE00003630060.1" ; exon_number 2 ; gene_id "ST6GALNAC6--AL031073.2^ST6GALNAC6^ENSG00000160408.15" ; gene_name ST6GALNAC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020718.4" ; havana_transcript "OTTHUMT00000054280.1" ; hgnc_id "HGNC:23364" ; level 2 ; orig_coord_info "chr9,127897956,127897981,-" ; protein_id "ENSP00000291839.6" ; tag basic ; transcript_id "ST6GALNAC6--AL031073.2^ENST00000291839.10" ; transcript_name "ST6GALNAC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ST6GALNAC6--SPANXN4 HAVANA gene 4476 13405 . + . FI_gene_label "ST6GALNAC6^ENSG00000160408.15" ; ID "ST6GALNAC6--SPANXN4^ST6GALNAC6^ENSG00000160408.15" ; exon_id "ENSE00003630060.1" ; exon_number 2 ; gene_id "ST6GALNAC6--SPANXN4^ST6GALNAC6^ENSG00000160408.15" ; gene_name ST6GALNAC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020718.4" ; havana_transcript "OTTHUMT00000054280.1" ; hgnc_id "HGNC:23364" ; level 2 ; orig_coord_info "chr9,127897956,127897981,-" ; protein_id "ENSP00000291839.6" ; tag basic ; transcript_id "ST6GALNAC6--SPANXN4^ENST00000291839.10" ; transcript_name "ST6GALNAC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ST6GALNAC6--SPANXN4 HAVANA mRNA 4476 13405 . + . FI_gene_label "ST6GALNAC6^ENSG00000160408.15" ; ID "ST6GALNAC6--SPANXN4^ENST00000291839.10" ; Parent "ST6GALNAC6--SPANXN4^ST6GALNAC6^ENSG00000160408.15" ; exon_id "ENSE00003630060.1" ; exon_number 2 ; gene_id "ST6GALNAC6--SPANXN4^ST6GALNAC6^ENSG00000160408.15" ; gene_name ST6GALNAC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020718.4" ; havana_transcript "OTTHUMT00000054280.1" ; hgnc_id "HGNC:23364" ; level 2 ; orig_coord_info "chr9,127897956,127897981,-" ; protein_id "ENSP00000291839.6" ; tag basic ; transcript_id "ST6GALNAC6--SPANXN4^ENST00000291839.10" ; transcript_name "ST6GALNAC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ST6GALNAC6--SPANXN4 HAVANA gene 16425 18263 . + . FI_gene_label "SPANXN4^ENSG00000189326.4" ; ID "ST6GALNAC6--SPANXN4^SPANXN4^ENSG00000189326.4" ; exon_id "ENSE00001692747.1" ; exon_number 1 ; gene_id "ST6GALNAC6--SPANXN4^SPANXN4^ENSG00000189326.4" ; gene_name SPANXN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022575.3" ; havana_transcript "OTTHUMT00000058612.2" ; hgnc_id "HGNC:33177" ; level 1 ; orig_coord_info "chrX,143026015,143026092,+" ; protein_id "ENSP00000359535.3" ; tag basic appris_alternative_2 exp_conf ; transcript_id "ST6GALNAC6--SPANXN4^ENST00000370504.3" ; transcript_name "SPANXN4-201" ; transcript_support_level 5 ; transcript_type protein_coding
ST6GALNAC6--SPANXN4 HAVANA mRNA 16425 18263 . + . FI_gene_label "SPANXN4^ENSG00000189326.4" ; ID "ST6GALNAC6--SPANXN4^ENST00000370504.3" ; Parent "ST6GALNAC6--SPANXN4^SPANXN4^ENSG00000189326.4" ; exon_id "ENSE00001692747.1" ; exon_number 1 ; gene_id "ST6GALNAC6--SPANXN4^SPANXN4^ENSG00000189326.4" ; gene_name SPANXN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022575.3" ; havana_transcript "OTTHUMT00000058612.2" ; hgnc_id "HGNC:33177" ; level 1 ; orig_coord_info "chrX,143026015,143026092,+" ; protein_id "ENSP00000359535.3" ; tag basic appris_alternative_2 exp_conf ; transcript_id "ST6GALNAC6--SPANXN4^ENST00000370504.3" ; transcript_name "SPANXN4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TAOK1--ABRA HAVANA gene 1001 36635 . + . FI_gene_label "TAOK1^ENSG00000160551.12" ; ID "TAOK1--ABRA^TAOK1^ENSG00000160551.12" ; ccdsid "CCDS32601.1" ; exon_id "ENSE00001254249.3" ; exon_number 2 ; gene_id "TAOK1--ABRA^TAOK1^ENSG00000160551.12" ; gene_name TAOK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179718.3" ; havana_transcript "OTTHUMT00000447790.1" ; hgnc_id "HGNC:29259" ; level 2 ; orig_coord_info "chr17,29451549,29451680,+" ; protein_id "ENSP00000261716.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAOK1--ABRA^ENST00000261716.8" ; transcript_name "TAOK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAOK1--ABRA HAVANA mRNA 1001 36635 . + . FI_gene_label "TAOK1^ENSG00000160551.12" ; ID "TAOK1--ABRA^ENST00000261716.8" ; Parent "TAOK1--ABRA^TAOK1^ENSG00000160551.12" ; ccdsid "CCDS32601.1" ; exon_id "ENSE00001254249.3" ; exon_number 2 ; gene_id "TAOK1--ABRA^TAOK1^ENSG00000160551.12" ; gene_name TAOK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179718.3" ; havana_transcript "OTTHUMT00000447790.1" ; hgnc_id "HGNC:29259" ; level 2 ; orig_coord_info "chr17,29451549,29451680,+" ; protein_id "ENSP00000261716.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAOK1--ABRA^ENST00000261716.8" ; transcript_name "TAOK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAOK1--ABRA HAVANA gene 39636 43389 . + . FI_gene_label "ABRA^ENSG00000174429.4" ; ID "TAOK1--ABRA^ABRA^ENSG00000174429.4" ; ccdsid "CCDS6305.1" ; exon_id "ENSE00001207130.8" ; exon_number 1 ; gene_id "TAOK1--ABRA^ABRA^ENSG00000174429.4" ; gene_name ABRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000164809.2" ; havana_transcript "OTTHUMT00000380416.2" ; hgnc_id "HGNC:30655" ; level 2 ; orig_coord_info "chr8,106769523,106770190,-" ; protein_id "ENSP00000311436.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAOK1--ABRA^ENST00000311955.4" ; transcript_name "ABRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAOK1--ABRA HAVANA mRNA 39636 43389 . + . FI_gene_label "ABRA^ENSG00000174429.4" ; ID "TAOK1--ABRA^ENST00000311955.4" ; Parent "TAOK1--ABRA^ABRA^ENSG00000174429.4" ; ccdsid "CCDS6305.1" ; exon_id "ENSE00001207130.8" ; exon_number 1 ; gene_id "TAOK1--ABRA^ABRA^ENSG00000174429.4" ; gene_name ABRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000164809.2" ; havana_transcript "OTTHUMT00000380416.2" ; hgnc_id "HGNC:30655" ; level 2 ; orig_coord_info "chr8,106769523,106770190,-" ; protein_id "ENSP00000311436.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAOK1--ABRA^ENST00000311955.4" ; transcript_name "ABRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAOK1--AP003789.1 HAVANA gene 1001 36635 . + . FI_gene_label "TAOK1^ENSG00000160551.12" ; ID "TAOK1--AP003789.1^TAOK1^ENSG00000160551.12" ; ccdsid "CCDS32601.1" ; exon_id "ENSE00001254249.3" ; exon_number 2 ; gene_id "TAOK1--AP003789.1^TAOK1^ENSG00000160551.12" ; gene_name TAOK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179718.3" ; havana_transcript "OTTHUMT00000447790.1" ; hgnc_id "HGNC:29259" ; level 2 ; orig_coord_info "chr17,29451549,29451680,+" ; protein_id "ENSP00000261716.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAOK1--AP003789.1^ENST00000261716.8" ; transcript_name "TAOK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAOK1--AP003789.1 HAVANA mRNA 1001 36635 . + . FI_gene_label "TAOK1^ENSG00000160551.12" ; ID "TAOK1--AP003789.1^ENST00000261716.8" ; Parent "TAOK1--AP003789.1^TAOK1^ENSG00000160551.12" ; ccdsid "CCDS32601.1" ; exon_id "ENSE00001254249.3" ; exon_number 2 ; gene_id "TAOK1--AP003789.1^TAOK1^ENSG00000160551.12" ; gene_name TAOK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179718.3" ; havana_transcript "OTTHUMT00000447790.1" ; hgnc_id "HGNC:29259" ; level 2 ; orig_coord_info "chr17,29451549,29451680,+" ; protein_id "ENSP00000261716.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAOK1--AP003789.1^ENST00000261716.8" ; transcript_name "TAOK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRPS1--AC034268.2 HAVANA gene 3960 20612 . + . FI_gene_label "TRPS1^ENSG00000104447.13" ; ID "TRPS1--AC034268.2^TRPS1^ENSG00000104447.13" ; ccdsid "CCDS83316.1" ; exon_id "ENSE00003549754.1" ; exon_number 2 ; gene_id "TRPS1--AC034268.2^TRPS1^ENSG00000104447.13" ; gene_name TRPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142829.6" ; havana_transcript "OTTHUMT00000286436.3" ; hgnc_id "HGNC:12340" ; level 2 ; orig_coord_info "chr8,115619132,115620058,-" ; protein_id "ENSP00000220888.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "TRPS1--AC034268.2^ENST00000220888.9" ; transcript_name "TRPS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRPS1--AC034268.2 HAVANA mRNA 3960 20612 . + . FI_gene_label "TRPS1^ENSG00000104447.13" ; ID "TRPS1--AC034268.2^ENST00000220888.9" ; Parent "TRPS1--AC034268.2^TRPS1^ENSG00000104447.13" ; ccdsid "CCDS83316.1" ; exon_id "ENSE00003549754.1" ; exon_number 2 ; gene_id "TRPS1--AC034268.2^TRPS1^ENSG00000104447.13" ; gene_name TRPS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000142829.6" ; havana_transcript "OTTHUMT00000286436.3" ; hgnc_id "HGNC:12340" ; level 2 ; orig_coord_info "chr8,115619132,115620058,-" ; protein_id "ENSP00000220888.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "TRPS1--AC034268.2^ENST00000220888.9" ; transcript_name "TRPS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP32--EXT1 HAVANA gene 3539 44774 . + . FI_gene_label "USP32^ENSG00000170832.13" ; ID "USP32--EXT1^USP32^ENSG00000170832.13" ; ccdsid "CCDS32697.1" ; exon_id "ENSE00002823319.2" ; exon_number 1 ; gene_id "USP32--EXT1^USP32^ENSG00000170832.13" ; gene_name USP32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180001.4" ; havana_transcript "OTTHUMT00000449235.3" ; hgnc_id "HGNC:19143" ; level 2 ; orig_coord_info "chr17,60391882,60391939,-" ; protein_id "ENSP00000300896.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--EXT1^ENST00000300896.9" ; transcript_name "USP32-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP32--EXT1 HAVANA mRNA 3539 44774 . + . FI_gene_label "USP32^ENSG00000170832.13" ; ID "USP32--EXT1^ENST00000300896.9" ; Parent "USP32--EXT1^USP32^ENSG00000170832.13" ; ccdsid "CCDS32697.1" ; exon_id "ENSE00002823319.2" ; exon_number 1 ; gene_id "USP32--EXT1^USP32^ENSG00000170832.13" ; gene_name USP32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180001.4" ; havana_transcript "OTTHUMT00000449235.3" ; hgnc_id "HGNC:19143" ; level 2 ; orig_coord_info "chr17,60391882,60391939,-" ; protein_id "ENSP00000300896.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--EXT1^ENST00000300896.9" ; transcript_name "USP32-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP32--EXT1 HAVANA gene 47775 67072 . + . FI_gene_label "EXT1^ENSG00000182197.12" ; ID "USP32--EXT1^EXT1^ENSG00000182197.12" ; ccdsid "CCDS6324.1" ; exon_id "ENSE00001476785.3" ; exon_number 1 ; gene_id "USP32--EXT1^EXT1^ENSG00000182197.12" ; gene_name EXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059718.6" ; havana_transcript "OTTHUMT00000132768.3" ; hgnc_id "HGNC:3512" ; level 2 ; orig_coord_info "chr8,118110085,118111046,-" ; protein_id "ENSP00000367446.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--EXT1^ENST00000378204.7" ; transcript_name "EXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP32--EXT1 HAVANA mRNA 47775 67072 . + . FI_gene_label "EXT1^ENSG00000182197.12" ; ID "USP32--EXT1^ENST00000378204.7" ; Parent "USP32--EXT1^EXT1^ENSG00000182197.12" ; ccdsid "CCDS6324.1" ; exon_id "ENSE00001476785.3" ; exon_number 1 ; gene_id "USP32--EXT1^EXT1^ENSG00000182197.12" ; gene_name EXT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059718.6" ; havana_transcript "OTTHUMT00000132768.3" ; hgnc_id "HGNC:3512" ; level 2 ; orig_coord_info "chr8,118110085,118111046,-" ; protein_id "ENSP00000367446.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--EXT1^ENST00000378204.7" ; transcript_name "EXT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP32--MED30 HAVANA gene 47775 52214 . + . FI_gene_label "MED30^ENSG00000164758.7" ; ID "USP32--MED30^MED30^ENSG00000164758.7" ; ccdsid "CCDS6323.1" ; exon_id "ENSE00001087222.3" ; exon_number 1 ; gene_id "USP32--MED30^MED30^ENSG00000164758.7" ; gene_name MED30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164920.2" ; havana_transcript "OTTHUMT00000380923.1" ; hgnc_id "HGNC:23032" ; level 2 ; orig_coord_info "chr8,117520877,117521053,+" ; protein_id "ENSP00000297347.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--MED30^ENST00000297347.7" ; transcript_name "MED30-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP32--MED30 HAVANA mRNA 47775 52214 . + . FI_gene_label "MED30^ENSG00000164758.7" ; ID "USP32--MED30^ENST00000297347.7" ; Parent "USP32--MED30^MED30^ENSG00000164758.7" ; ccdsid "CCDS6323.1" ; exon_id "ENSE00001087222.3" ; exon_number 1 ; gene_id "USP32--MED30^MED30^ENSG00000164758.7" ; gene_name MED30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164920.2" ; havana_transcript "OTTHUMT00000380923.1" ; hgnc_id "HGNC:23032" ; level 2 ; orig_coord_info "chr8,117520877,117521053,+" ; protein_id "ENSP00000297347.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--MED30^ENST00000297347.7" ; transcript_name "MED30-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP32--MED30 HAVANA gene 3539 44774 . + . FI_gene_label "USP32^ENSG00000170832.13" ; ID "USP32--MED30^USP32^ENSG00000170832.13" ; ccdsid "CCDS32697.1" ; exon_id "ENSE00002823319.2" ; exon_number 1 ; gene_id "USP32--MED30^USP32^ENSG00000170832.13" ; gene_name USP32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180001.4" ; havana_transcript "OTTHUMT00000449235.3" ; hgnc_id "HGNC:19143" ; level 2 ; orig_coord_info "chr17,60391882,60391939,-" ; protein_id "ENSP00000300896.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--MED30^ENST00000300896.9" ; transcript_name "USP32-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP32--MED30 HAVANA mRNA 3539 44774 . + . FI_gene_label "USP32^ENSG00000170832.13" ; ID "USP32--MED30^ENST00000300896.9" ; Parent "USP32--MED30^USP32^ENSG00000170832.13" ; ccdsid "CCDS32697.1" ; exon_id "ENSE00002823319.2" ; exon_number 1 ; gene_id "USP32--MED30^USP32^ENSG00000170832.13" ; gene_name USP32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180001.4" ; havana_transcript "OTTHUMT00000449235.3" ; hgnc_id "HGNC:19143" ; level 2 ; orig_coord_info "chr17,60391882,60391939,-" ; protein_id "ENSP00000300896.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP32--MED30^ENST00000300896.9" ; transcript_name "USP32-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VMP1--SRCIN1 HAVANA gene 1463 20165 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "VMP1--SRCIN1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "VMP1--SRCIN1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VMP1--SRCIN1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VMP1--SRCIN1 HAVANA mRNA 1463 20165 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "VMP1--SRCIN1^ENST00000262291.9" ; Parent "VMP1--SRCIN1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "VMP1--SRCIN1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VMP1--SRCIN1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VMP1--SRCIN1 HAVANA gene 24435 32538 . + . FI_gene_label "SRCIN1^ENSG00000277363.5" ; ID "VMP1--SRCIN1^SRCIN1^ENSG00000277363.5" ; exon_id "ENSE00003740142.1" ; exon_number 1 ; gene_id "VMP1--SRCIN1^SRCIN1^ENSG00000277363.5" ; gene_name SRCIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188493.4" ; havana_transcript "OTTHUMT00000477426.2" ; hgnc_id "HGNC:29506" ; level 2 ; orig_coord_info "chr17,38604479,38604602,-" ; protein_id "ENSP00000478342.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "VMP1--SRCIN1^ENST00000612431.1" ; transcript_name "SRCIN1-211" ; transcript_support_level 1 ; transcript_type protein_coding
VMP1--SRCIN1 HAVANA mRNA 24435 32538 . + . FI_gene_label "SRCIN1^ENSG00000277363.5" ; ID "VMP1--SRCIN1^ENST00000612431.1" ; Parent "VMP1--SRCIN1^SRCIN1^ENSG00000277363.5" ; exon_id "ENSE00003740142.1" ; exon_number 1 ; gene_id "VMP1--SRCIN1^SRCIN1^ENSG00000277363.5" ; gene_name SRCIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188493.4" ; havana_transcript "OTTHUMT00000477426.2" ; hgnc_id "HGNC:29506" ; level 2 ; orig_coord_info "chr17,38604479,38604602,-" ; protein_id "ENSP00000478342.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "VMP1--SRCIN1^ENST00000612431.1" ; transcript_name "SRCIN1-211" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS13B--UBR5-AS1 HAVANA gene 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--UBR5-AS1^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--UBR5-AS1^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--UBR5-AS1^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS13B--UBR5-AS1 HAVANA mRNA 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--UBR5-AS1^ENST00000355155.5" ; Parent "VPS13B--UBR5-AS1^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--UBR5-AS1^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--UBR5-AS1^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF394--ASNS ENSEMBL gene 19407 32139 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "ZNF394--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "ZNF394--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "ZNF394--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF394--ASNS ENSEMBL mRNA 19407 32139 . + . FI_gene_label "ASNS^ENSG00000070669.17" ; ID "ZNF394--ASNS^ENST00000175506.8" ; Parent "ZNF394--ASNS^ASNS^ENSG00000070669.17" ; ccdsid "CCDS5652.1" ; exon_id "ENSE00001212450.2" ; exon_number 4 ; gene_id "ZNF394--ASNS^ASNS^ENSG00000070669.17" ; gene_name ASNS ; gene_type protein_coding ; havana_gene "OTTHUMG00000022892.14" ; hgnc_id "HGNC:753" ; level 3 ; orig_coord_info "chr7,97868908,97869156,-" ; protein_id "ENSP00000175506.4" ; tag basic appris_principal_1 CCDS ; transcript_id "ZNF394--ASNS^ENST00000175506.8" ; transcript_name "ASNS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF394--ASNS HAVANA gene 3587 8398 . + . FI_gene_label "ZNF394^ENSG00000160908.15" ; ID "ZNF394--ASNS^ZNF394^ENSG00000160908.15" ; ccdsid "CCDS5666.1" ; exon_id "ENSE00003660774.2" ; exon_number 1 ; gene_id "ZNF394--ASNS^ZNF394^ENSG00000160908.15" ; gene_name ZNF394 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154660.3" ; havana_transcript "OTTHUMT00000336498.3" ; hgnc_id "HGNC:18832" ; level 2 ; orig_coord_info "chr7,99499638,99500093,-" ; protein_id "ENSP00000337363.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF394--ASNS^ENST00000337673.7" ; transcript_name "ZNF394-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF394--ASNS HAVANA mRNA 3587 8398 . + . FI_gene_label "ZNF394^ENSG00000160908.15" ; ID "ZNF394--ASNS^ENST00000337673.7" ; Parent "ZNF394--ASNS^ZNF394^ENSG00000160908.15" ; ccdsid "CCDS5666.1" ; exon_id "ENSE00003660774.2" ; exon_number 1 ; gene_id "ZNF394--ASNS^ZNF394^ENSG00000160908.15" ; gene_name ZNF394 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154660.3" ; havana_transcript "OTTHUMT00000336498.3" ; hgnc_id "HGNC:18832" ; level 2 ; orig_coord_info "chr7,99499638,99500093,-" ; protein_id "ENSP00000337363.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF394--ASNS^ENST00000337673.7" ; transcript_name "ZNF394-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF394--TAC1 HAVANA gene 19409 24825 . + . FI_gene_label "TAC1^ENSG00000006128.12" ; ID "ZNF394--TAC1^TAC1^ENSG00000006128.12" ; ccdsid "CCDS5649.1" ; exon_id "ENSE00001039798.1" ; exon_number 2 ; gene_id "ZNF394--TAC1^TAC1^ENSG00000006128.12" ; gene_name TAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154069.4" ; havana_transcript "OTTHUMT00000333696.2" ; hgnc_id "HGNC:11517" ; level 2 ; orig_coord_info "chr7,97732613,97732735,+" ; protein_id "ENSP00000321106.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF394--TAC1^ENST00000319273.10" ; transcript_name "TAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF394--TAC1 HAVANA mRNA 19409 24825 . + . FI_gene_label "TAC1^ENSG00000006128.12" ; ID "ZNF394--TAC1^ENST00000319273.10" ; Parent "ZNF394--TAC1^TAC1^ENSG00000006128.12" ; ccdsid "CCDS5649.1" ; exon_id "ENSE00001039798.1" ; exon_number 2 ; gene_id "ZNF394--TAC1^TAC1^ENSG00000006128.12" ; gene_name TAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154069.4" ; havana_transcript "OTTHUMT00000333696.2" ; hgnc_id "HGNC:11517" ; level 2 ; orig_coord_info "chr7,97732613,97732735,+" ; protein_id "ENSP00000321106.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF394--TAC1^ENST00000319273.10" ; transcript_name "TAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF394--TAC1 HAVANA gene 3587 8398 . + . FI_gene_label "ZNF394^ENSG00000160908.15" ; ID "ZNF394--TAC1^ZNF394^ENSG00000160908.15" ; ccdsid "CCDS5666.1" ; exon_id "ENSE00003660774.2" ; exon_number 1 ; gene_id "ZNF394--TAC1^ZNF394^ENSG00000160908.15" ; gene_name ZNF394 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154660.3" ; havana_transcript "OTTHUMT00000336498.3" ; hgnc_id "HGNC:18832" ; level 2 ; orig_coord_info "chr7,99499638,99500093,-" ; protein_id "ENSP00000337363.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF394--TAC1^ENST00000337673.7" ; transcript_name "ZNF394-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF394--TAC1 HAVANA mRNA 3587 8398 . + . FI_gene_label "ZNF394^ENSG00000160908.15" ; ID "ZNF394--TAC1^ENST00000337673.7" ; Parent "ZNF394--TAC1^ZNF394^ENSG00000160908.15" ; ccdsid "CCDS5666.1" ; exon_id "ENSE00003660774.2" ; exon_number 1 ; gene_id "ZNF394--TAC1^ZNF394^ENSG00000160908.15" ; gene_name ZNF394 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154660.3" ; havana_transcript "OTTHUMT00000336498.3" ; hgnc_id "HGNC:18832" ; level 2 ; orig_coord_info "chr7,99499638,99500093,-" ; protein_id "ENSP00000337363.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF394--TAC1^ENST00000337673.7" ; transcript_name "ZNF394-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC060809.1--ERBB4 HAVANA gene 1001 4564 . + . FI_gene_label "AC060809.1^ENSG00000259543.1" ; ID "AC060809.1--ERBB4^AC060809.1^ENSG00000259543.1" ; exon_id "ENSE00002544347.1" ; exon_number 1 ; gene_id "AC060809.1--ERBB4^AC060809.1^ENSG00000259543.1" ; gene_name "AC060809.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172164.1" ; havana_transcript "OTTHUMT00000417157.1" ; level 2 ; orig_coord_info "chr15,81427448,81427545,+" ; tag basic ; transcript_id "AC060809.1--ERBB4^ENST00000559211.1" ; transcript_name "AC060809.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC060809.1--ERBB4 HAVANA RNA 1001 4564 . + . FI_gene_label "AC060809.1^ENSG00000259543.1" ; ID "AC060809.1--ERBB4^ENST00000559211.1" ; Parent "AC060809.1--ERBB4^AC060809.1^ENSG00000259543.1" ; exon_id "ENSE00002544347.1" ; exon_number 1 ; gene_id "AC060809.1--ERBB4^AC060809.1^ENSG00000259543.1" ; gene_name "AC060809.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172164.1" ; havana_transcript "OTTHUMT00000417157.1" ; level 2 ; orig_coord_info "chr15,81427448,81427545,+" ; tag basic ; transcript_id "AC060809.1--ERBB4^ENST00000559211.1" ; transcript_name "AC060809.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
ASTN2--RNU6-710P ENSEMBL gene 38785 38889 . + . FI_gene_label "RNU6-710P^ENSG00000222356.1" ; ID "ASTN2--RNU6-710P^RNU6-710P^ENSG00000222356.1" ; exon_id "ENSE00001590242.1" ; exon_number 1 ; gene_id "ASTN2--RNU6-710P^RNU6-710P^ENSG00000222356.1" ; gene_name "RNU6-710P" ; gene_type snRNA ; hgnc_id "HGNC:47673" ; level 3 ; orig_coord_info "chr9,111996635,111996739,-" ; tag basic ; transcript_id "ASTN2--RNU6-710P^ENST00000410424.1" ; transcript_name "RNU6-710P-201" ; transcript_support_level NA ; transcript_type snRNA
ASTN2--RNU6-710P ENSEMBL RNA 38785 38889 . + . FI_gene_label "RNU6-710P^ENSG00000222356.1" ; ID "ASTN2--RNU6-710P^ENST00000410424.1" ; Parent "ASTN2--RNU6-710P^RNU6-710P^ENSG00000222356.1" ; exon_id "ENSE00001590242.1" ; exon_number 1 ; gene_id "ASTN2--RNU6-710P^RNU6-710P^ENSG00000222356.1" ; gene_name "RNU6-710P" ; gene_type snRNA ; hgnc_id "HGNC:47673" ; level 3 ; orig_coord_info "chr9,111996635,111996739,-" ; tag basic ; transcript_id "ASTN2--RNU6-710P^ENST00000410424.1" ; transcript_name "RNU6-710P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
CACNB1--LINC00536 HAVANA gene 19321 37563 . + . FI_gene_label "LINC00536^ENSG00000249917.3" ; ID "CACNB1--LINC00536^LINC00536^ENSG00000249917.3" ; exon_id "ENSE00002063497.1" ; exon_number 1 ; gene_id "CACNB1--LINC00536^LINC00536^ENSG00000249917.3" ; gene_name LINC00536 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164936.3" ; havana_transcript "OTTHUMT00000381020.1" ; hgnc_id "HGNC:43645" ; level 2 ; orig_coord_info "chr8,116324830,116325059,-" ; tag basic ; transcript_id "CACNB1--LINC00536^ENST00000505156.2" ; transcript_name "LINC00536-201" ; transcript_support_level 1 ; transcript_type lncRNA
CACNB1--LINC00536 HAVANA RNA 19321 37563 . + . FI_gene_label "LINC00536^ENSG00000249917.3" ; ID "CACNB1--LINC00536^ENST00000505156.2" ; Parent "CACNB1--LINC00536^LINC00536^ENSG00000249917.3" ; exon_id "ENSE00002063497.1" ; exon_number 1 ; gene_id "CACNB1--LINC00536^LINC00536^ENSG00000249917.3" ; gene_name LINC00536 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164936.3" ; havana_transcript "OTTHUMT00000381020.1" ; hgnc_id "HGNC:43645" ; level 2 ; orig_coord_info "chr8,116324830,116325059,-" ; tag basic ; transcript_id "CACNB1--LINC00536^ENST00000505156.2" ; transcript_name "LINC00536-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
FBXL20--AC068413.1 HAVANA gene 29529 33304 . + . FI_gene_label "AC068413.1^ENSG00000253619.1" ; ID "FBXL20--AC068413.1^AC068413.1^ENSG00000253619.1" ; exon_id "ENSE00002111591.1" ; exon_number 1 ; gene_id "FBXL20--AC068413.1^AC068413.1^ENSG00000253619.1" ; gene_name "AC068413.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000165043.1" ; havana_transcript "OTTHUMT00000381541.1" ; level 2 ; orig_coord_info "chr8,120913065,120913159,+" ; tag dotter_confirmed basic ; transcript_id "FBXL20--AC068413.1^ENST00000517739.1" ; transcript_name "AC068413.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
FBXL20--AC068413.1 HAVANA RNA 29529 33304 . + . FI_gene_label "AC068413.1^ENSG00000253619.1" ; ID "FBXL20--AC068413.1^ENST00000517739.1" ; Parent "FBXL20--AC068413.1^AC068413.1^ENSG00000253619.1" ; exon_id "ENSE00002111591.1" ; exon_number 1 ; gene_id "FBXL20--AC068413.1^AC068413.1^ENSG00000253619.1" ; gene_name "AC068413.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000165043.1" ; havana_transcript "OTTHUMT00000381541.1" ; level 2 ; orig_coord_info "chr8,120913065,120913159,+" ; tag dotter_confirmed basic ; transcript_id "FBXL20--AC068413.1^ENST00000517739.1" ; transcript_name "AC068413.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
FBXL20--LINC00536 HAVANA gene 29532 47774 . + . FI_gene_label "LINC00536^ENSG00000249917.3" ; ID "FBXL20--LINC00536^LINC00536^ENSG00000249917.3" ; exon_id "ENSE00002063497.1" ; exon_number 1 ; gene_id "FBXL20--LINC00536^LINC00536^ENSG00000249917.3" ; gene_name LINC00536 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164936.3" ; havana_transcript "OTTHUMT00000381020.1" ; hgnc_id "HGNC:43645" ; level 2 ; orig_coord_info "chr8,116324830,116325059,-" ; tag basic ; transcript_id "FBXL20--LINC00536^ENST00000505156.2" ; transcript_name "LINC00536-201" ; transcript_support_level 1 ; transcript_type lncRNA
FBXL20--LINC00536 HAVANA RNA 29532 47774 . + . FI_gene_label "LINC00536^ENSG00000249917.3" ; ID "FBXL20--LINC00536^ENST00000505156.2" ; Parent "FBXL20--LINC00536^LINC00536^ENSG00000249917.3" ; exon_id "ENSE00002063497.1" ; exon_number 1 ; gene_id "FBXL20--LINC00536^LINC00536^ENSG00000249917.3" ; gene_name LINC00536 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164936.3" ; havana_transcript "OTTHUMT00000381020.1" ; hgnc_id "HGNC:43645" ; level 2 ; orig_coord_info "chr8,116324830,116325059,-" ; tag basic ; transcript_id "FBXL20--LINC00536^ENST00000505156.2" ; transcript_name "LINC00536-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
IKZF3--TUBB4BP6 HAVANA gene 21247 21725 . + . FI_gene_label "TUBB4BP6^ENSG00000231166.2" ; ID "IKZF3--TUBB4BP6^TUBB4BP6^ENSG00000231166.2" ; exon_id "ENSE00001763285.2" ; exon_number 1 ; gene_id "IKZF3--TUBB4BP6^TUBB4BP6^ENSG00000231166.2" ; gene_name TUBB4BP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020568.2" ; havana_transcript "OTTHUMT00000053814.2" ; hgnc_id "HGNC:42336" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr9,118763867,118764345,+" ; tag basic ; transcript_id "IKZF3--TUBB4BP6^ENST00000437576.2" ; transcript_name "TUBB4BP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
IKZF3--TUBB4BP6 HAVANA RNA 21247 21725 . + . FI_gene_label "TUBB4BP6^ENSG00000231166.2" ; ID "IKZF3--TUBB4BP6^ENST00000437576.2" ; Parent "IKZF3--TUBB4BP6^TUBB4BP6^ENSG00000231166.2" ; exon_id "ENSE00001763285.2" ; exon_number 1 ; gene_id "IKZF3--TUBB4BP6^TUBB4BP6^ENSG00000231166.2" ; gene_name TUBB4BP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020568.2" ; havana_transcript "OTTHUMT00000053814.2" ; hgnc_id "HGNC:42336" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr9,118763867,118764345,+" ; tag basic ; transcript_id "IKZF3--TUBB4BP6^ENST00000437576.2" ; transcript_name "TUBB4BP6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
LRP12--AC106881.1 HAVANA gene 19841 23169 . + . FI_gene_label "AC106881.1^ENSG00000271474.1" ; ID "LRP12--AC106881.1^AC106881.1^ENSG00000271474.1" ; exon_id "ENSE00003549023.1" ; exon_number 1 ; gene_id "LRP12--AC106881.1^AC106881.1^ENSG00000271474.1" ; gene_name "AC106881.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185100.1" ; havana_transcript "OTTHUMT00000469558.1" ; level 2 ; orig_coord_info "chr4,95549129,95552457,+" ; tag basic ; transcript_id "LRP12--AC106881.1^ENST00000605849.1" ; transcript_name "AC106881.1-201" ; transcript_support_level NA ; transcript_type lncRNA
LRP12--AC106881.1 HAVANA RNA 19841 23169 . + . FI_gene_label "AC106881.1^ENSG00000271474.1" ; ID "LRP12--AC106881.1^ENST00000605849.1" ; Parent "LRP12--AC106881.1^AC106881.1^ENSG00000271474.1" ; exon_id "ENSE00003549023.1" ; exon_number 1 ; gene_id "LRP12--AC106881.1^AC106881.1^ENSG00000271474.1" ; gene_name "AC106881.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185100.1" ; havana_transcript "OTTHUMT00000469558.1" ; level 2 ; orig_coord_info "chr4,95549129,95552457,+" ; tag basic ; transcript_id "LRP12--AC106881.1^ENST00000605849.1" ; transcript_name "AC106881.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
LRP12--LINC01837 HAVANA gene 19872 30568 . + . FI_gene_label "LINC01837^ENSG00000267489.5" ; ID "LRP12--LINC01837^LINC01837^ENSG00000267489.5" ; exon_id "ENSE00003798766.1" ; exon_number 1 ; gene_id "LRP12--LINC01837^LINC01837^ENSG00000267489.5" ; gene_name LINC01837 ; gene_type lncRNA ; havana_gene "OTTHUMG00000180233.25" ; havana_transcript "OTTHUMT00000489998.1" ; hgnc_id "HGNC:52653" ; level 2 ; orig_coord_info "chr19,32072051,32072082,-" ; transcript_id "LRP12--LINC01837^ENST00000590021.2" ; transcript_name "LINC01837-201" ; transcript_support_level 5 ; transcript_type lncRNA
LRP12--LINC01837 HAVANA RNA 19872 30568 . + . FI_gene_label "LINC01837^ENSG00000267489.5" ; ID "LRP12--LINC01837^ENST00000590021.2" ; Parent "LRP12--LINC01837^LINC01837^ENSG00000267489.5" ; exon_id "ENSE00003798766.1" ; exon_number 1 ; gene_id "LRP12--LINC01837^LINC01837^ENSG00000267489.5" ; gene_name LINC01837 ; gene_type lncRNA ; havana_gene "OTTHUMG00000180233.25" ; havana_transcript "OTTHUMT00000489998.1" ; hgnc_id "HGNC:52653" ; level 2 ; orig_coord_info "chr19,32072051,32072082,-" ; transcript_id "LRP12--LINC01837^ENST00000590021.2" ; transcript_name "LINC01837-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
LRP12--RPL30P6 HAVANA gene 19841 20182 . + . FI_gene_label "RPL30P6^ENSG00000242936.1" ; ID "LRP12--RPL30P6^RPL30P6^ENSG00000242936.1" ; exon_id "ENSE00001831769.1" ; exon_number 1 ; gene_id "LRP12--RPL30P6^RPL30P6^ENSG00000242936.1" ; gene_name RPL30P6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157526.1" ; havana_transcript "OTTHUMT00000349052.1" ; hgnc_id "HGNC:37015" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,95644952,95645293,-" ; tag pseudo_consens basic ; transcript_id "LRP12--RPL30P6^ENST00000475925.1" ; transcript_name "RPL30P6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LRP12--RPL30P6 HAVANA RNA 19841 20182 . + . FI_gene_label "RPL30P6^ENSG00000242936.1" ; ID "LRP12--RPL30P6^ENST00000475925.1" ; Parent "LRP12--RPL30P6^RPL30P6^ENSG00000242936.1" ; exon_id "ENSE00001831769.1" ; exon_number 1 ; gene_id "LRP12--RPL30P6^RPL30P6^ENSG00000242936.1" ; gene_name RPL30P6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157526.1" ; havana_transcript "OTTHUMT00000349052.1" ; hgnc_id "HGNC:37015" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr4,95644952,95645293,-" ; tag pseudo_consens basic ; transcript_id "LRP12--RPL30P6^ENST00000475925.1" ; transcript_name "RPL30P6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PPP4R1--RNU6-245P ENSEMBL gene 29664 29770 . + . FI_gene_label "RNU6-245P^ENSG00000206747.1" ; ID "PPP4R1--RNU6-245P^RNU6-245P^ENSG00000206747.1" ; exon_id "ENSE00001807769.1" ; exon_number 1 ; gene_id "PPP4R1--RNU6-245P^RNU6-245P^ENSG00000206747.1" ; gene_name "RNU6-245P" ; gene_type snRNA ; hgnc_id "HGNC:47208" ; level 3 ; orig_coord_info "chrX,68539443,68539549,-" ; tag basic ; transcript_id "PPP4R1--RNU6-245P^ENST00000384020.1" ; transcript_name "RNU6-245P-201" ; transcript_support_level NA ; transcript_type snRNA
PPP4R1--RNU6-245P ENSEMBL RNA 29664 29770 . + . FI_gene_label "RNU6-245P^ENSG00000206747.1" ; ID "PPP4R1--RNU6-245P^ENST00000384020.1" ; Parent "PPP4R1--RNU6-245P^RNU6-245P^ENSG00000206747.1" ; exon_id "ENSE00001807769.1" ; exon_number 1 ; gene_id "PPP4R1--RNU6-245P^RNU6-245P^ENSG00000206747.1" ; gene_name "RNU6-245P" ; gene_type snRNA ; hgnc_id "HGNC:47208" ; level 3 ; orig_coord_info "chrX,68539443,68539549,-" ; tag basic ; transcript_id "PPP4R1--RNU6-245P^ENST00000384020.1" ; transcript_name "RNU6-245P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
PPP4R1--RPL31P63 HAVANA gene 29664 30038 . + . FI_gene_label "RPL31P63^ENSG00000236735.3" ; ID "PPP4R1--RPL31P63^RPL31P63^ENSG00000236735.3" ; exon_id "ENSE00001701253.1" ; exon_number 1 ; gene_id "PPP4R1--RPL31P63^RPL31P63^ENSG00000236735.3" ; gene_name RPL31P63 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000021746.1" ; havana_transcript "OTTHUMT00000057022.1" ; hgnc_id "HGNC:35666" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,68600099,68600473,+" ; tag pseudo_consens basic ; transcript_id "PPP4R1--RPL31P63^ENST00000422565.1" ; transcript_name "RPL31P63-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
PPP4R1--RPL31P63 HAVANA RNA 29664 30038 . + . FI_gene_label "RPL31P63^ENSG00000236735.3" ; ID "PPP4R1--RPL31P63^ENST00000422565.1" ; Parent "PPP4R1--RPL31P63^RPL31P63^ENSG00000236735.3" ; exon_id "ENSE00001701253.1" ; exon_number 1 ; gene_id "PPP4R1--RPL31P63^RPL31P63^ENSG00000236735.3" ; gene_name RPL31P63 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000021746.1" ; havana_transcript "OTTHUMT00000057022.1" ; hgnc_id "HGNC:35666" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chrX,68600099,68600473,+" ; tag pseudo_consens basic ; transcript_id "PPP4R1--RPL31P63^ENST00000422565.1" ; transcript_name "RPL31P63-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SAMD12--AC034154.1 HAVANA gene 32383 37073 . + . FI_gene_label "AC034154.1^ENSG00000254044.5" ; ID "SAMD12--AC034154.1^AC034154.1^ENSG00000254044.5" ; exon_id "ENSE00002116135.1" ; exon_number 1 ; gene_id "SAMD12--AC034154.1^AC034154.1^ENSG00000254044.5" ; gene_name "AC034154.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164938.1" ; havana_transcript "OTTHUMT00000381039.1" ; level 2 ; orig_coord_info "chr4,97633478,97633823,-" ; tag basic ; transcript_id "SAMD12--AC034154.1^ENST00000518105.1" ; transcript_name "AC034154.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
SAMD12--AC034154.1 HAVANA RNA 32383 37073 . + . FI_gene_label "AC034154.1^ENSG00000254044.5" ; ID "SAMD12--AC034154.1^ENST00000518105.1" ; Parent "SAMD12--AC034154.1^AC034154.1^ENSG00000254044.5" ; exon_id "ENSE00002116135.1" ; exon_number 1 ; gene_id "SAMD12--AC034154.1^AC034154.1^ENSG00000254044.5" ; gene_name "AC034154.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164938.1" ; havana_transcript "OTTHUMT00000381039.1" ; level 2 ; orig_coord_info "chr4,97633478,97633823,-" ; tag basic ; transcript_id "SAMD12--AC034154.1^ENST00000518105.1" ; transcript_name "AC034154.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
ST6GALNAC6--AL031073.2 HAVANA gene 16411 28091 . + . FI_gene_label "AL031073.2^ENSG00000288098.1" ; ID "ST6GALNAC6--AL031073.2^AL031073.2^ENSG00000288098.1" ; exon_id "ENSE00003874978.1" ; exon_number 1 ; gene_id "ST6GALNAC6--AL031073.2^AL031073.2^ENSG00000288098.1" ; gene_name "AL031073.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193766.1" ; havana_transcript "OTTHUMT00000504535.1" ; level 2 ; orig_coord_info "chrX,141934496,141934717,+" ; tag CAGE_supported_TSS basic ; transcript_id "ST6GALNAC6--AL031073.2^ENST00000664519.1" ; transcript_name "AL031073.2-201" ; transcript_type lncRNA
ST6GALNAC6--AL031073.2 HAVANA RNA 16411 28091 . + . FI_gene_label "AL031073.2^ENSG00000288098.1" ; ID "ST6GALNAC6--AL031073.2^ENST00000664519.1" ; Parent "ST6GALNAC6--AL031073.2^AL031073.2^ENSG00000288098.1" ; exon_id "ENSE00003874978.1" ; exon_number 1 ; gene_id "ST6GALNAC6--AL031073.2^AL031073.2^ENSG00000288098.1" ; gene_name "AL031073.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193766.1" ; havana_transcript "OTTHUMT00000504535.1" ; level 2 ; orig_coord_info "chrX,141934496,141934717,+" ; tag CAGE_supported_TSS basic ; transcript_id "ST6GALNAC6--AL031073.2^ENST00000664519.1" ; transcript_name "AL031073.2-201" ; transcript_type lncRNA
L1 and L2 created:
TAOK1--AP003789.1 HAVANA gene 39636 40240 . + . FI_gene_label "AP003789.1^ENSG00000275905.1" ; ID "TAOK1--AP003789.1^AP003789.1^ENSG00000275905.1" ; exon_id "ENSE00003744920.1" ; exon_number 1 ; gene_id "TAOK1--AP003789.1^AP003789.1^ENSG00000275905.1" ; gene_name "AP003789.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187749.1" ; havana_transcript "OTTHUMT00000475513.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr8,106980967,106981571,-" ; tag basic ; transcript_id "TAOK1--AP003789.1^ENST00000617737.1" ; transcript_name "AP003789.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
TAOK1--AP003789.1 HAVANA RNA 39636 40240 . + . FI_gene_label "AP003789.1^ENSG00000275905.1" ; ID "TAOK1--AP003789.1^ENST00000617737.1" ; Parent "TAOK1--AP003789.1^AP003789.1^ENSG00000275905.1" ; exon_id "ENSE00003744920.1" ; exon_number 1 ; gene_id "TAOK1--AP003789.1^AP003789.1^ENSG00000275905.1" ; gene_name "AP003789.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187749.1" ; havana_transcript "OTTHUMT00000475513.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr8,106980967,106981571,-" ; tag basic ; transcript_id "TAOK1--AP003789.1^ENST00000617737.1" ; transcript_name "AP003789.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TRPS1--AC034268.2 HAVANA gene 29960 37459 . + . FI_gene_label "AC034268.2^ENSG00000285939.2" ; ID "TRPS1--AC034268.2^AC034268.2^ENSG00000285939.2" ; exon_id "ENSE00003838408.1" ; exon_number 1 ; gene_id "TRPS1--AC034268.2^AC034268.2^ENSG00000285939.2" ; gene_name "AC034268.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192905.2" ; havana_transcript "OTTHUMT00000499536.1" ; level 2 ; orig_coord_info "chr17,54066577,54066825,-" ; tag basic ; transcript_id "TRPS1--AC034268.2^ENST00000650577.1" ; transcript_name "AC034268.2-201" ; transcript_type lncRNA
TRPS1--AC034268.2 HAVANA RNA 29960 37459 . + . FI_gene_label "AC034268.2^ENSG00000285939.2" ; ID "TRPS1--AC034268.2^ENST00000650577.1" ; Parent "TRPS1--AC034268.2^AC034268.2^ENSG00000285939.2" ; exon_id "ENSE00003838408.1" ; exon_number 1 ; gene_id "TRPS1--AC034268.2^AC034268.2^ENSG00000285939.2" ; gene_name "AC034268.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192905.2" ; havana_transcript "OTTHUMT00000499536.1" ; level 2 ; orig_coord_info "chr17,54066577,54066825,-" ; tag basic ; transcript_id "TRPS1--AC034268.2^ENST00000650577.1" ; transcript_name "AC034268.2-201" ; transcript_type lncRNA
L1 and L2 created:
VPS13B--UBR5-AS1 HAVANA gene 81956 85003 . + . FI_gene_label "UBR5-AS1^ENSG00000246263.3" ; ID "VPS13B--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; exon_id "ENSE00001962645.1" ; exon_number 1 ; gene_id "VPS13B--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; gene_name "UBR5-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164878.2" ; havana_transcript "OTTHUMT00000380743.1" ; hgnc_id "HGNC:51661" ; level 2 ; orig_coord_info "chr8,102243609,102244121,+" ; transcript_id "VPS13B--UBR5-AS1^ENST00000499653.1" ; transcript_name "UBR5-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
VPS13B--UBR5-AS1 HAVANA RNA 81956 85003 . + . FI_gene_label "UBR5-AS1^ENSG00000246263.3" ; ID "VPS13B--UBR5-AS1^ENST00000499653.1" ; Parent "VPS13B--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; exon_id "ENSE00001962645.1" ; exon_number 1 ; gene_id "VPS13B--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; gene_name "UBR5-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164878.2" ; havana_transcript "OTTHUMT00000380743.1" ; hgnc_id "HGNC:51661" ; level 2 ; orig_coord_info "chr8,102243609,102244121,+" ; transcript_id "VPS13B--UBR5-AS1^ENST00000499653.1" ; transcript_name "UBR5-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
876 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
1476 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 72 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 0 second) ------
GFF3 file parsed