File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/e0aed7a30bae9c463e2f33641ceeca/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:13:03
                             Started mapping on |	Jun 08 10:19:42
                                    Finished on |	Jun 08 11:17:50
       Mapping speed, Million of reads per hour |	272.81

                          Number of input reads |	264320833
                      Average input read length |	218
                                    UNIQUE READS:
                   Uniquely mapped reads number |	249154359
                        Uniquely mapped reads % |	94.26%
                          Average mapped length |	218.72
                       Number of splices: Total |	193648081
            Number of splices: Annotated (sjdb) |	188372523
                       Number of splices: GT/AG |	190912886
                       Number of splices: GC/AG |	1387529
                       Number of splices: AT/AC |	184178
               Number of splices: Non-canonical |	1163488
                      Mismatch rate per base, % |	0.38%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.84
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.73
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11712643
             % of reads mapped to multiple loci |	4.43%
        Number of reads mapped to too many loci |	739105
             % of reads mapped to too many loci |	0.28%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2150520
                 % of reads unmapped: too short |	0.81%
                Number of reads unmapped: other |	564206
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%