Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 09:35:48.856 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 09:35:48 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-ffabe0-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 09:35:48 GMT 2026] Executing as ?@nf-f898a8f858b91258b44da366d8edf170-b5448-jfwdl on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 09:35:48 MarkDuplicates Start of doWork freeMemory: 105802112; totalMemory: 134217728; maxMemory: 127137742848 INFO 2026-06-08 09:35:48 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 09:35:48 MarkDuplicates Will retain up to 460643995 data points before spilling to disk. INFO 2026-06-08 09:35:54 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,353,921 INFO 2026-06-08 09:35:54 MarkDuplicates Tracking 2032 as yet unmatched pairs. 465 records in RAM. INFO 2026-06-08 09:35:57 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,502,520 INFO 2026-06-08 09:35:57 MarkDuplicates Tracking 3467 as yet unmatched pairs. 44 records in RAM. INFO 2026-06-08 09:35:59 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,358,250 INFO 2026-06-08 09:35:59 MarkDuplicates Tracking 5595 as yet unmatched pairs. 380 records in RAM. INFO 2026-06-08 09:36:01 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,013,824 INFO 2026-06-08 09:36:01 MarkDuplicates Tracking 6992 as yet unmatched pairs. 244 records in RAM. INFO 2026-06-08 09:36:03 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:13,780,912 INFO 2026-06-08 09:36:03 MarkDuplicates Tracking 8667 as yet unmatched pairs. 405 records in RAM. INFO 2026-06-08 09:36:05 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:16,685,620 INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 9596 as yet unmatched pairs. 31 records in RAM. INFO 2026-06-08 09:36:08 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,419,723 INFO 2026-06-08 09:36:08 MarkDuplicates Tracking 11173 as yet unmatched pairs. 56 records in RAM. INFO 2026-06-08 09:36:10 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,836,909 INFO 2026-06-08 09:36:10 MarkDuplicates Tracking 12936 as yet unmatched pairs. 334 records in RAM. INFO 2026-06-08 09:36:12 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:22,638,960 INFO 2026-06-08 09:36:12 MarkDuplicates Tracking 15337 as yet unmatched pairs. 1096 records in RAM. INFO 2026-06-08 09:36:14 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:24,453,436 INFO 2026-06-08 09:36:14 MarkDuplicates Tracking 15892 as yet unmatched pairs. 200 records in RAM. INFO 2026-06-08 09:36:17 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:26,773,821 INFO 2026-06-08 09:36:17 MarkDuplicates Tracking 17497 as yet unmatched pairs. 383 records in RAM. INFO 2026-06-08 09:36:19 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:28,737,139 INFO 2026-06-08 09:36:19 MarkDuplicates Tracking 19026 as yet unmatched pairs. 413 records in RAM. INFO 2026-06-08 09:36:21 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:31,699,794 INFO 2026-06-08 09:36:21 MarkDuplicates Tracking 20534 as yet unmatched pairs. 304 records in RAM. INFO 2026-06-08 09:36:23 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:33,024,466 INFO 2026-06-08 09:36:23 MarkDuplicates Tracking 22378 as yet unmatched pairs. 590 records in RAM. INFO 2026-06-08 09:36:26 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:36,286,594 INFO 2026-06-08 09:36:26 MarkDuplicates Tracking 23927 as yet unmatched pairs. 471 records in RAM. INFO 2026-06-08 09:36:28 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:39,334,978 INFO 2026-06-08 09:36:28 MarkDuplicates Tracking 25562 as yet unmatched pairs. 599 records in RAM. INFO 2026-06-08 09:36:30 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:40,495,366 INFO 2026-06-08 09:36:30 MarkDuplicates Tracking 26483 as yet unmatched pairs. 98 records in RAM. INFO 2026-06-08 09:36:32 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:43,598,860 INFO 2026-06-08 09:36:32 MarkDuplicates Tracking 28321 as yet unmatched pairs. 310 records in RAM. INFO 2026-06-08 09:36:34 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:46,022,915 INFO 2026-06-08 09:36:34 MarkDuplicates Tracking 29713 as yet unmatched pairs. 242 records in RAM. INFO 2026-06-08 09:36:37 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:51,818,076 INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 31331 as yet unmatched pairs. 476 records in RAM. INFO 2026-06-08 09:36:39 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:58,576,175 INFO 2026-06-08 09:36:39 MarkDuplicates Tracking 32496 as yet unmatched pairs. 149 records in RAM. INFO 2026-06-08 09:36:42 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:64,652,160 INFO 2026-06-08 09:36:42 MarkDuplicates Tracking 33923 as yet unmatched pairs. 82 records in RAM. INFO 2026-06-08 09:36:44 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:77,956,592 INFO 2026-06-08 09:36:44 MarkDuplicates Tracking 35252 as yet unmatched pairs. 120 records in RAM. INFO 2026-06-08 09:36:46 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:90,010,464 INFO 2026-06-08 09:36:46 MarkDuplicates Tracking 36687 as yet unmatched pairs. 103 records in RAM. INFO 2026-06-08 09:36:49 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 3s. Last read position: chr1:99,748,586 INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 38052 as yet unmatched pairs. 125 records in RAM. INFO 2026-06-08 09:36:52 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:109,161,900 INFO 2026-06-08 09:36:52 MarkDuplicates Tracking 39832 as yet unmatched pairs. 551 records in RAM. INFO 2026-06-08 09:36:54 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:109,671,534 INFO 2026-06-08 09:36:54 MarkDuplicates Tracking 41819 as yet unmatched pairs. 1037 records in RAM. INFO 2026-06-08 09:36:56 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:112,701,489 INFO 2026-06-08 09:36:56 MarkDuplicates Tracking 43510 as yet unmatched pairs. 1256 records in RAM. INFO 2026-06-08 09:36:58 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:114,421,530 INFO 2026-06-08 09:36:58 MarkDuplicates Tracking 44197 as yet unmatched pairs. 629 records in RAM. INFO 2026-06-08 09:37:01 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:117,368,262 INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 45588 as yet unmatched pairs. 582 records in RAM. INFO 2026-06-08 09:37:03 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:119,929,198 INFO 2026-06-08 09:37:03 MarkDuplicates Tracking 49153 as yet unmatched pairs. 2632 records in RAM. INFO 2026-06-08 09:37:05 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:120,511,685 INFO 2026-06-08 09:37:05 MarkDuplicates Tracking 47832 as yet unmatched pairs. 123 records in RAM. INFO 2026-06-08 09:37:07 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:145,926,124 INFO 2026-06-08 09:37:07 MarkDuplicates Tracking 48585 as yet unmatched pairs. 188 records in RAM. INFO 2026-06-08 09:37:09 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:146,164,826 INFO 2026-06-08 09:37:09 MarkDuplicates Tracking 49663 as yet unmatched pairs. 634 records in RAM. INFO 2026-06-08 09:37:12 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:148,539,472 INFO 2026-06-08 09:37:12 MarkDuplicates Tracking 49880 as yet unmatched pairs. 168 records in RAM. INFO 2026-06-08 09:37:14 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:148,665,865 INFO 2026-06-08 09:37:14 MarkDuplicates Tracking 50303 as yet unmatched pairs. 217 records in RAM. INFO 2026-06-08 09:37:16 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:149,508,625 INFO 2026-06-08 09:37:16 MarkDuplicates Tracking 50617 as yet unmatched pairs. 76 records in RAM. INFO 2026-06-08 09:37:17 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:150,446,320 INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 51943 as yet unmatched pairs. 280 records in RAM. INFO 2026-06-08 09:37:19 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:150,836,426 INFO 2026-06-08 09:37:19 MarkDuplicates Tracking 53285 as yet unmatched pairs. 251 records in RAM. INFO 2026-06-08 09:37:22 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:151,411,702 INFO 2026-06-08 09:37:22 MarkDuplicates Tracking 55307 as yet unmatched pairs. 714 records in RAM. INFO 2026-06-08 09:37:24 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:153,937,578 INFO 2026-06-08 09:37:24 MarkDuplicates Tracking 56132 as yet unmatched pairs. 138 records in RAM. INFO 2026-06-08 09:37:26 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,057 INFO 2026-06-08 09:37:26 MarkDuplicates Tracking 57371 as yet unmatched pairs. 49 records in RAM. INFO 2026-06-08 09:37:28 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:154,959,139 INFO 2026-06-08 09:37:28 MarkDuplicates Tracking 59079 as yet unmatched pairs. 364 records in RAM. INFO 2026-06-08 09:37:30 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:155,187,764 INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 61935 as yet unmatched pairs. 1693 records in RAM. INFO 2026-06-08 09:37:32 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:155,207,852 INFO 2026-06-08 09:37:32 MarkDuplicates Tracking 61464 as yet unmatched pairs. 245 records in RAM. INFO 2026-06-08 09:37:35 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:155,721,515 INFO 2026-06-08 09:37:35 MarkDuplicates Tracking 63189 as yet unmatched pairs. 722 records in RAM. INFO 2026-06-08 09:37:37 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:156,135,260 INFO 2026-06-08 09:37:37 MarkDuplicates Tracking 66287 as yet unmatched pairs. 2081 records in RAM. INFO 2026-06-08 09:37:40 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:156,677,121 INFO 2026-06-08 09:37:40 MarkDuplicates Tracking 66073 as yet unmatched pairs. 156 records in RAM. INFO 2026-06-08 09:37:42 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:160,177,633 INFO 2026-06-08 09:37:42 MarkDuplicates Tracking 67422 as yet unmatched pairs. 35 records in RAM. INFO 2026-06-08 09:37:44 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:161,102,161 INFO 2026-06-08 09:37:44 MarkDuplicates Tracking 68964 as yet unmatched pairs. 71 records in RAM. INFO 2026-06-08 09:37:46 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:162,020,115 INFO 2026-06-08 09:37:46 MarkDuplicates Tracking 70463 as yet unmatched pairs. 260 records in RAM. INFO 2026-06-08 09:37:48 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:169,130,017 INFO 2026-06-08 09:37:48 MarkDuplicates Tracking 73248 as yet unmatched pairs. 1680 records in RAM. INFO 2026-06-08 09:37:50 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:172,578,338 INFO 2026-06-08 09:37:50 MarkDuplicates Tracking 73268 as yet unmatched pairs. 400 records in RAM. INFO 2026-06-08 09:37:53 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:180,019,965 INFO 2026-06-08 09:37:53 MarkDuplicates Tracking 74516 as yet unmatched pairs. 251 records in RAM. INFO 2026-06-08 09:37:55 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr1:183,122,240 INFO 2026-06-08 09:37:55 MarkDuplicates Tracking 76101 as yet unmatched pairs. 281 records in RAM. INFO 2026-06-08 09:37:57 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr1:186,325,791 INFO 2026-06-08 09:37:57 MarkDuplicates Tracking 77505 as yet unmatched pairs. 348 records in RAM. INFO 2026-06-08 09:37:59 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr1:197,199,965 INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 78861 as yet unmatched pairs. 590 records in RAM. INFO 2026-06-08 09:38:01 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:202,729,032 INFO 2026-06-08 09:38:01 MarkDuplicates Tracking 80252 as yet unmatched pairs. 615 records in RAM. INFO 2026-06-08 09:38:04 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr1:203,849,742 INFO 2026-06-08 09:38:04 MarkDuplicates Tracking 81919 as yet unmatched pairs. 967 records in RAM. INFO 2026-06-08 09:38:06 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:206,728,703 INFO 2026-06-08 09:38:06 MarkDuplicates Tracking 82470 as yet unmatched pairs. 154 records in RAM. INFO 2026-06-08 09:38:08 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr1:211,982,677 INFO 2026-06-08 09:38:08 MarkDuplicates Tracking 83817 as yet unmatched pairs. 104 records in RAM. INFO 2026-06-08 09:38:10 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr1:222,645,640 INFO 2026-06-08 09:38:10 MarkDuplicates Tracking 85469 as yet unmatched pairs. 350 records in RAM. INFO 2026-06-08 09:38:12 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr1:225,514,809 INFO 2026-06-08 09:38:12 MarkDuplicates Tracking 87716 as yet unmatched pairs. 1361 records in RAM. INFO 2026-06-08 09:38:14 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr1:227,759,409 INFO 2026-06-08 09:38:14 MarkDuplicates Tracking 87939 as yet unmatched pairs. 156 records in RAM. INFO 2026-06-08 09:38:16 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr1:231,265,258 INFO 2026-06-08 09:38:16 MarkDuplicates Tracking 89687 as yet unmatched pairs. 90 records in RAM. INFO 2026-06-08 09:38:18 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr1:235,781,949 INFO 2026-06-08 09:38:18 MarkDuplicates Tracking 91401 as yet unmatched pairs. 163 records in RAM. INFO 2026-06-08 09:38:20 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,856 INFO 2026-06-08 09:38:20 MarkDuplicates Tracking 94624 as yet unmatched pairs. 2029 records in RAM. INFO 2026-06-08 09:38:22 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr1:248,848,482 INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 94239 as yet unmatched pairs. 101 records in RAM. INFO 2026-06-08 09:38:25 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 3s. Last read position: chr2:10,789,781 INFO 2026-06-08 09:38:25 MarkDuplicates Tracking 95998 as yet unmatched pairs. 94918 records in RAM. INFO 2026-06-08 09:38:28 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:20,447,524 INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 98910 as yet unmatched pairs. 97816 records in RAM. INFO 2026-06-08 09:38:30 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:26,234,316 INFO 2026-06-08 09:38:30 MarkDuplicates Tracking 99299 as yet unmatched pairs. 98197 records in RAM. INFO 2026-06-08 09:38:32 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:27,492,337 INFO 2026-06-08 09:38:32 MarkDuplicates Tracking 100435 as yet unmatched pairs. 99313 records in RAM. INFO 2026-06-08 09:38:35 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:32,502,853 INFO 2026-06-08 09:38:35 MarkDuplicates Tracking 102141 as yet unmatched pairs. 100996 records in RAM. INFO 2026-06-08 09:38:37 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 09:38:37 MarkDuplicates Tracking 290014 as yet unmatched pairs. 92394 records in RAM. INFO 2026-06-08 09:38:39 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:38:39 MarkDuplicates Tracking 759154 as yet unmatched pairs. 70582 records in RAM. INFO 2026-06-08 09:38:41 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:33,389,282 INFO 2026-06-08 09:38:41 MarkDuplicates Tracking 813898 as yet unmatched pairs. 68309 records in RAM. INFO 2026-06-08 09:38:43 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:42,256,569 INFO 2026-06-08 09:38:43 MarkDuplicates Tracking 813407 as yet unmatched pairs. 67806 records in RAM. INFO 2026-06-08 09:38:45 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:45,488,313 INFO 2026-06-08 09:38:45 MarkDuplicates Tracking 810980 as yet unmatched pairs. 65355 records in RAM. INFO 2026-06-08 09:38:48 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:54,632,673 INFO 2026-06-08 09:38:48 MarkDuplicates Tracking 809647 as yet unmatched pairs. 64006 records in RAM. INFO 2026-06-08 09:38:50 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:61,188,523 INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 808278 as yet unmatched pairs. 62617 records in RAM. INFO 2026-06-08 09:38:52 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:68,467,738 INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 806788 as yet unmatched pairs. 61120 records in RAM. INFO 2026-06-08 09:38:54 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:72,988,320 INFO 2026-06-08 09:38:54 MarkDuplicates Tracking 805771 as yet unmatched pairs. 60094 records in RAM. INFO 2026-06-08 09:38:57 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:74,493,007 INFO 2026-06-08 09:38:57 MarkDuplicates Tracking 803898 as yet unmatched pairs. 58207 records in RAM. INFO 2026-06-08 09:38:59 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:86,477,853 INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 802561 as yet unmatched pairs. 56854 records in RAM. INFO 2026-06-08 09:39:01 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:96,269,096 INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 801386 as yet unmatched pairs. 55672 records in RAM. INFO 2026-06-08 09:39:04 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:98,822,155 INFO 2026-06-08 09:39:04 MarkDuplicates Tracking 800023 as yet unmatched pairs. 54300 records in RAM. INFO 2026-06-08 09:39:06 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:106,436,734 INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 798633 as yet unmatched pairs. 52897 records in RAM. INFO 2026-06-08 09:39:08 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:109,803,985 INFO 2026-06-08 09:39:08 MarkDuplicates Tracking 797824 as yet unmatched pairs. 52073 records in RAM. INFO 2026-06-08 09:39:09 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:112,401,517 INFO 2026-06-08 09:39:09 MarkDuplicates Tracking 797267 as yet unmatched pairs. 51493 records in RAM. INFO 2026-06-08 09:39:11 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:127,059,093 INFO 2026-06-08 09:39:11 MarkDuplicates Tracking 796115 as yet unmatched pairs. 50320 records in RAM. INFO 2026-06-08 09:39:13 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:131,596,846 INFO 2026-06-08 09:39:13 MarkDuplicates Tracking 795896 as yet unmatched pairs. 50088 records in RAM. INFO 2026-06-08 09:39:16 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:148,470,099 INFO 2026-06-08 09:39:16 MarkDuplicates Tracking 793303 as yet unmatched pairs. 47465 records in RAM. INFO 2026-06-08 09:39:18 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:159,748,345 INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 792069 as yet unmatched pairs. 46218 records in RAM. INFO 2026-06-08 09:39:20 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:169,896,570 INFO 2026-06-08 09:39:20 MarkDuplicates Tracking 790610 as yet unmatched pairs. 44741 records in RAM. INFO 2026-06-08 09:39:22 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:174,720,619 INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 790056 as yet unmatched pairs. 44172 records in RAM. INFO 2026-06-08 09:39:25 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:181,523,454 INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 788108 as yet unmatched pairs. 42208 records in RAM. INFO 2026-06-08 09:39:27 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:188,974,441 INFO 2026-06-08 09:39:27 MarkDuplicates Tracking 788935 as yet unmatched pairs. 43006 records in RAM. INFO 2026-06-08 09:39:30 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:188,996,162 INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 787958 as yet unmatched pairs. 42011 records in RAM. INFO 2026-06-08 09:39:32 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:189,006,943 INFO 2026-06-08 09:39:32 MarkDuplicates Tracking 786070 as yet unmatched pairs. 40114 records in RAM. INFO 2026-06-08 09:39:34 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:189,056,977 INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 782013 as yet unmatched pairs. 36051 records in RAM. INFO 2026-06-08 09:39:36 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:190,976,909 INFO 2026-06-08 09:39:36 MarkDuplicates Tracking 780639 as yet unmatched pairs. 34667 records in RAM. INFO 2026-06-08 09:39:39 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr2:201,064,048 INFO 2026-06-08 09:39:39 MarkDuplicates Tracking 778946 as yet unmatched pairs. 32962 records in RAM. INFO 2026-06-08 09:39:41 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:206,161,452 INFO 2026-06-08 09:39:41 MarkDuplicates Tracking 778687 as yet unmatched pairs. 32684 records in RAM. INFO 2026-06-08 09:39:43 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,562 INFO 2026-06-08 09:39:43 MarkDuplicates Tracking 791268 as yet unmatched pairs. 45239 records in RAM. INFO 2026-06-08 09:39:45 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,918 INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 782015 as yet unmatched pairs. 35985 records in RAM. INFO 2026-06-08 09:39:47 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,118 INFO 2026-06-08 09:39:47 MarkDuplicates Tracking 796427 as yet unmatched pairs. 50387 records in RAM. INFO 2026-06-08 09:39:49 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,227 INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 785988 as yet unmatched pairs. 39948 records in RAM. INFO 2026-06-08 09:39:52 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,628 INFO 2026-06-08 09:39:52 MarkDuplicates Tracking 794962 as yet unmatched pairs. 48914 records in RAM. INFO 2026-06-08 09:39:54 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr2:215,382,212 INFO 2026-06-08 09:39:54 MarkDuplicates Tracking 788380 as yet unmatched pairs. 42331 records in RAM. INFO 2026-06-08 09:39:57 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,386,766 INFO 2026-06-08 09:39:57 MarkDuplicates Tracking 777993 as yet unmatched pairs. 31938 records in RAM. INFO 2026-06-08 09:39:59 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,394,605 INFO 2026-06-08 09:39:59 MarkDuplicates Tracking 775720 as yet unmatched pairs. 29655 records in RAM. INFO 2026-06-08 09:40:02 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr2:215,404,458 INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 778483 as yet unmatched pairs. 32415 records in RAM. INFO 2026-06-08 09:40:04 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr2:215,408,115 INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 779643 as yet unmatched pairs. 33562 records in RAM. INFO 2026-06-08 09:40:06 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,087 INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 778597 as yet unmatched pairs. 32509 records in RAM. INFO 2026-06-08 09:40:08 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,380 INFO 2026-06-08 09:40:08 MarkDuplicates Tracking 766887 as yet unmatched pairs. 20794 records in RAM. INFO 2026-06-08 09:40:10 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr2:215,430,712 INFO 2026-06-08 09:40:10 MarkDuplicates Tracking 770772 as yet unmatched pairs. 24670 records in RAM. INFO 2026-06-08 09:40:13 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr2:215,435,700 INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 766009 as yet unmatched pairs. 19895 records in RAM. INFO 2026-06-08 09:40:15 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr2:217,818,386 INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 759226 as yet unmatched pairs. 13094 records in RAM. INFO 2026-06-08 09:40:17 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr2:219,374,884 INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 757353 as yet unmatched pairs. 11199 records in RAM. INFO 2026-06-08 09:40:19 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr2:227,533,598 INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 755636 as yet unmatched pairs. 9447 records in RAM. INFO 2026-06-08 09:40:21 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr2:232,336,295 INFO 2026-06-08 09:40:21 MarkDuplicates Tracking 754061 as yet unmatched pairs. 7862 records in RAM. INFO 2026-06-08 09:40:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr2:237,340,671 INFO 2026-06-08 09:40:24 MarkDuplicates Tracking 754396 as yet unmatched pairs. 8184 records in RAM. INFO 2026-06-08 09:40:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr2:237,367,040 INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 752499 as yet unmatched pairs. 6279 records in RAM. INFO 2026-06-08 09:40:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr2:237,394,579 INFO 2026-06-08 09:40:28 MarkDuplicates Tracking 751362 as yet unmatched pairs. 5119 records in RAM. INFO 2026-06-08 09:40:31 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr2:240,574,113 INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 748241 as yet unmatched pairs. 1966 records in RAM. INFO 2026-06-08 09:40:33 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr2:241,735,235 INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 747315 as yet unmatched pairs. 1022 records in RAM. INFO 2026-06-08 09:40:36 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr3:9,739,163 INFO 2026-06-08 09:40:36 MarkDuplicates Tracking 745114 as yet unmatched pairs. 39983 records in RAM. INFO 2026-06-08 09:40:38 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:12,840,148 INFO 2026-06-08 09:40:38 MarkDuplicates Tracking 743515 as yet unmatched pairs. 38372 records in RAM. INFO 2026-06-08 09:40:40 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,568 INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 742038 as yet unmatched pairs. 36875 records in RAM. INFO 2026-06-08 09:40:42 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr3:32,391,901 INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 740682 as yet unmatched pairs. 35485 records in RAM. INFO 2026-06-08 09:40:44 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr3:39,089,303 INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 739199 as yet unmatched pairs. 33979 records in RAM. INFO 2026-06-08 09:40:46 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr3:42,635,271 INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 738142 as yet unmatched pairs. 32912 records in RAM. INFO 2026-06-08 09:40:49 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr3:46,446,446 INFO 2026-06-08 09:40:49 MarkDuplicates Tracking 738935 as yet unmatched pairs. 33693 records in RAM. INFO 2026-06-08 09:40:51 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr3:47,662,553 INFO 2026-06-08 09:40:51 MarkDuplicates Tracking 735078 as yet unmatched pairs. 29825 records in RAM. INFO 2026-06-08 09:40:53 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr3:48,695,367 INFO 2026-06-08 09:40:53 MarkDuplicates Tracking 733476 as yet unmatched pairs. 28202 records in RAM. INFO 2026-06-08 09:40:56 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr3:49,132,604 INFO 2026-06-08 09:40:56 MarkDuplicates Tracking 732567 as yet unmatched pairs. 27283 records in RAM. INFO 2026-06-08 09:40:58 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr3:50,118,382 INFO 2026-06-08 09:40:58 MarkDuplicates Tracking 730292 as yet unmatched pairs. 25004 records in RAM. INFO 2026-06-08 09:41:00 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr3:52,292,658 INFO 2026-06-08 09:41:00 MarkDuplicates Tracking 728887 as yet unmatched pairs. 23594 records in RAM. INFO 2026-06-08 09:41:03 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr3:53,228,098 INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 727320 as yet unmatched pairs. 22017 records in RAM. INFO 2026-06-08 09:41:05 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr3:58,526,513 INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 725878 as yet unmatched pairs. 20544 records in RAM. INFO 2026-06-08 09:41:07 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr3:71,112,487 INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 724595 as yet unmatched pairs. 19241 records in RAM. INFO 2026-06-08 09:41:09 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr3:100,744,832 INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 724291 as yet unmatched pairs. 18917 records in RAM. INFO 2026-06-08 09:41:11 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr3:108,060,775 INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 722456 as yet unmatched pairs. 17070 records in RAM. INFO 2026-06-08 09:41:13 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr3:114,351,419 INFO 2026-06-08 09:41:13 MarkDuplicates Tracking 720871 as yet unmatched pairs. 15480 records in RAM. INFO 2026-06-08 09:41:15 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr3:122,701,081 INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 719383 as yet unmatched pairs. 13981 records in RAM. INFO 2026-06-08 09:41:18 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr3:127,821,741 INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 717730 as yet unmatched pairs. 12302 records in RAM. INFO 2026-06-08 09:41:20 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr3:129,605,866 INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 716414 as yet unmatched pairs. 10978 records in RAM. INFO 2026-06-08 09:41:23 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr3:138,508,513 INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 714918 as yet unmatched pairs. 9470 records in RAM. INFO 2026-06-08 09:41:25 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr3:149,542,390 INFO 2026-06-08 09:41:25 MarkDuplicates Tracking 714393 as yet unmatched pairs. 8930 records in RAM. INFO 2026-06-08 09:41:27 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr3:160,412,306 INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 711986 as yet unmatched pairs. 6502 records in RAM. INFO 2026-06-08 09:41:29 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr3:179,234,187 INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 711071 as yet unmatched pairs. 5551 records in RAM. INFO 2026-06-08 09:41:31 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr3:184,321,709 INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 709752 as yet unmatched pairs. 4219 records in RAM. INFO 2026-06-08 09:41:33 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr3:188,609,216 INFO 2026-06-08 09:41:33 MarkDuplicates Tracking 709763 as yet unmatched pairs. 4211 records in RAM. INFO 2026-06-08 09:41:36 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr3:195,878,252 INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 706723 as yet unmatched pairs. 1143 records in RAM. INFO 2026-06-08 09:41:38 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr4:867,085 INFO 2026-06-08 09:41:38 MarkDuplicates Tracking 705289 as yet unmatched pairs. 23367 records in RAM. INFO 2026-06-08 09:41:40 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr4:2,305,260 INFO 2026-06-08 09:41:40 MarkDuplicates Tracking 703365 as yet unmatched pairs. 21416 records in RAM. INFO 2026-06-08 09:41:43 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 3s. Last read position: chr4:6,708,623 INFO 2026-06-08 09:41:43 MarkDuplicates Tracking 701724 as yet unmatched pairs. 19759 records in RAM. INFO 2026-06-08 09:41:45 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr4:15,625,317 INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 700495 as yet unmatched pairs. 18498 records in RAM. INFO 2026-06-08 09:41:48 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr4:38,878,222 INFO 2026-06-08 09:41:48 MarkDuplicates Tracking 699302 as yet unmatched pairs. 17263 records in RAM. INFO 2026-06-08 09:41:50 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr4:48,499,495 INFO 2026-06-08 09:41:50 MarkDuplicates Tracking 697866 as yet unmatched pairs. 15805 records in RAM. INFO 2026-06-08 09:41:52 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr4:56,995,401 INFO 2026-06-08 09:41:52 MarkDuplicates Tracking 696452 as yet unmatched pairs. 14374 records in RAM. INFO 2026-06-08 09:41:54 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr4:75,812,217 INFO 2026-06-08 09:41:54 MarkDuplicates Tracking 695159 as yet unmatched pairs. 13044 records in RAM. INFO 2026-06-08 09:41:56 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr4:82,824,584 INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 693841 as yet unmatched pairs. 11715 records in RAM. INFO 2026-06-08 09:41:59 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr4:87,981,641 INFO 2026-06-08 09:41:59 MarkDuplicates Tracking 692997 as yet unmatched pairs. 10846 records in RAM. INFO 2026-06-08 09:42:01 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr4:98,420,018 INFO 2026-06-08 09:42:01 MarkDuplicates Tracking 691054 as yet unmatched pairs. 8876 records in RAM. INFO 2026-06-08 09:42:03 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr4:109,494,751 INFO 2026-06-08 09:42:03 MarkDuplicates Tracking 689955 as yet unmatched pairs. 7757 records in RAM. INFO 2026-06-08 09:42:05 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr4:122,266,890 INFO 2026-06-08 09:42:05 MarkDuplicates Tracking 688606 as yet unmatched pairs. 6398 records in RAM. INFO 2026-06-08 09:42:07 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr4:140,627,515 INFO 2026-06-08 09:42:07 MarkDuplicates Tracking 688021 as yet unmatched pairs. 5791 records in RAM. INFO 2026-06-08 09:42:10 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr4:151,014,460 INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 686290 as yet unmatched pairs. 4032 records in RAM. INFO 2026-06-08 09:42:12 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr4:157,363,426 INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 684779 as yet unmatched pairs. 2496 records in RAM. INFO 2026-06-08 09:42:14 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr4:183,099,408 INFO 2026-06-08 09:42:14 MarkDuplicates Tracking 683169 as yet unmatched pairs. 865 records in RAM. INFO 2026-06-08 09:42:17 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr5:1,463,703 INFO 2026-06-08 09:42:17 MarkDuplicates Tracking 681707 as yet unmatched pairs. 45425 records in RAM. INFO 2026-06-08 09:42:19 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr5:14,297,125 INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 680867 as yet unmatched pairs. 44567 records in RAM. INFO 2026-06-08 09:42:22 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr5:14,498,537 INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 679770 as yet unmatched pairs. 43464 records in RAM. INFO 2026-06-08 09:42:24 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr5:34,185,671 INFO 2026-06-08 09:42:24 MarkDuplicates Tracking 676957 as yet unmatched pairs. 40635 records in RAM. INFO 2026-06-08 09:42:26 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr5:39,202,673 INFO 2026-06-08 09:42:26 MarkDuplicates Tracking 676235 as yet unmatched pairs. 39892 records in RAM. INFO 2026-06-08 09:42:28 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr5:55,231,357 INFO 2026-06-08 09:42:28 MarkDuplicates Tracking 674315 as yet unmatched pairs. 37965 records in RAM. INFO 2026-06-08 09:42:31 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr5:65,576,954 INFO 2026-06-08 09:42:31 MarkDuplicates Tracking 673076 as yet unmatched pairs. 36713 records in RAM. INFO 2026-06-08 09:42:33 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr5:70,970,408 INFO 2026-06-08 09:42:33 MarkDuplicates Tracking 672183 as yet unmatched pairs. 35806 records in RAM. INFO 2026-06-08 09:42:36 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr5:76,241,941 INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 670950 as yet unmatched pairs. 34564 records in RAM. INFO 2026-06-08 09:42:38 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr5:82,164,410 INFO 2026-06-08 09:42:38 MarkDuplicates Tracking 669681 as yet unmatched pairs. 33288 records in RAM. INFO 2026-06-08 09:42:40 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr5:83,541,108 INFO 2026-06-08 09:42:40 MarkDuplicates Tracking 669572 as yet unmatched pairs. 33177 records in RAM. INFO 2026-06-08 09:42:43 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr5:96,750,630 INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 667806 as yet unmatched pairs. 31399 records in RAM. INFO 2026-06-08 09:42:45 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr5:113,049,124 INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 666074 as yet unmatched pairs. 29645 records in RAM. INFO 2026-06-08 09:42:47 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr5:131,159,575 INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 665330 as yet unmatched pairs. 28887 records in RAM. INFO 2026-06-08 09:42:50 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr5:132,824,092 INFO 2026-06-08 09:42:50 MarkDuplicates Tracking 665604 as yet unmatched pairs. 29150 records in RAM. INFO 2026-06-08 09:42:52 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr5:134,157,714 INFO 2026-06-08 09:42:52 MarkDuplicates Tracking 660966 as yet unmatched pairs. 24502 records in RAM. INFO 2026-06-08 09:42:55 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr5:138,398,264 INFO 2026-06-08 09:42:55 MarkDuplicates Tracking 659189 as yet unmatched pairs. 22712 records in RAM. INFO 2026-06-08 09:42:57 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr5:139,403,889 INFO 2026-06-08 09:42:57 MarkDuplicates Tracking 657757 as yet unmatched pairs. 21261 records in RAM. INFO 2026-06-08 09:43:00 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr5:141,375,368 INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 656330 as yet unmatched pairs. 19787 records in RAM. INFO 2026-06-08 09:43:02 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr5:146,164,341 INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 655169 as yet unmatched pairs. 18592 records in RAM. INFO 2026-06-08 09:43:04 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr5:150,120,945 INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 655841 as yet unmatched pairs. 19253 records in RAM. INFO 2026-06-08 09:43:07 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,186 INFO 2026-06-08 09:43:07 MarkDuplicates Tracking 688744 as yet unmatched pairs. 52151 records in RAM. INFO 2026-06-08 09:43:09 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr5:150,404,681 INFO 2026-06-08 09:43:09 MarkDuplicates Tracking 672644 as yet unmatched pairs. 36048 records in RAM. INFO 2026-06-08 09:43:11 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,272 INFO 2026-06-08 09:43:11 MarkDuplicates Tracking 677485 as yet unmatched pairs. 40883 records in RAM. INFO 2026-06-08 09:43:14 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr5:150,535,692 INFO 2026-06-08 09:43:14 MarkDuplicates Tracking 647396 as yet unmatched pairs. 10786 records in RAM. INFO 2026-06-08 09:43:16 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr5:151,673,157 INFO 2026-06-08 09:43:16 MarkDuplicates Tracking 647068 as yet unmatched pairs. 10448 records in RAM. INFO 2026-06-08 09:43:19 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 2s. Last read position: chr5:168,493,937 INFO 2026-06-08 09:43:19 MarkDuplicates Tracking 644585 as yet unmatched pairs. 7943 records in RAM. INFO 2026-06-08 09:43:22 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr5:171,407,727 INFO 2026-06-08 09:43:22 MarkDuplicates Tracking 651815 as yet unmatched pairs. 15162 records in RAM. INFO 2026-06-08 09:43:24 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr5:176,969,169 INFO 2026-06-08 09:43:24 MarkDuplicates Tracking 641537 as yet unmatched pairs. 4869 records in RAM. INFO 2026-06-08 09:43:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr5:179,060,618 INFO 2026-06-08 09:43:27 MarkDuplicates Tracking 639993 as yet unmatched pairs. 3318 records in RAM. INFO 2026-06-08 09:43:29 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr5:179,823,961 INFO 2026-06-08 09:43:29 MarkDuplicates Tracking 640026 as yet unmatched pairs. 3346 records in RAM. INFO 2026-06-08 09:43:31 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr5:181,238,194 INFO 2026-06-08 09:43:31 MarkDuplicates Tracking 639295 as yet unmatched pairs. 2609 records in RAM. INFO 2026-06-08 09:43:34 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,743 INFO 2026-06-08 09:43:34 MarkDuplicates Tracking 636308 as yet unmatched pairs. 42343 records in RAM. INFO 2026-06-08 09:43:36 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr6:14,136,247 INFO 2026-06-08 09:43:36 MarkDuplicates Tracking 634533 as yet unmatched pairs. 40562 records in RAM. INFO 2026-06-08 09:43:39 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr6:26,056,344 INFO 2026-06-08 09:43:39 MarkDuplicates Tracking 632703 as yet unmatched pairs. 38705 records in RAM. INFO 2026-06-08 09:43:41 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr6:29,553,845 INFO 2026-06-08 09:43:41 MarkDuplicates Tracking 631274 as yet unmatched pairs. 37270 records in RAM. INFO 2026-06-08 09:43:43 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr6:30,705,195 INFO 2026-06-08 09:43:43 MarkDuplicates Tracking 630095 as yet unmatched pairs. 36078 records in RAM. INFO 2026-06-08 09:43:45 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr6:31,548,195 INFO 2026-06-08 09:43:45 MarkDuplicates Tracking 628556 as yet unmatched pairs. 34529 records in RAM. INFO 2026-06-08 09:43:48 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,627 INFO 2026-06-08 09:43:48 MarkDuplicates Tracking 627038 as yet unmatched pairs. 32999 records in RAM. INFO 2026-06-08 09:43:50 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr6:31,983,877 INFO 2026-06-08 09:43:50 MarkDuplicates Tracking 626642 as yet unmatched pairs. 32599 records in RAM. INFO 2026-06-08 09:43:52 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr6:32,008,635 INFO 2026-06-08 09:43:52 MarkDuplicates Tracking 629278 as yet unmatched pairs. 35225 records in RAM. INFO 2026-06-08 09:43:54 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr6:32,034,513 INFO 2026-06-08 09:43:54 MarkDuplicates Tracking 625743 as yet unmatched pairs. 31687 records in RAM. INFO 2026-06-08 09:43:56 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr6:32,442,586 INFO 2026-06-08 09:43:56 MarkDuplicates Tracking 624840 as yet unmatched pairs. 30779 records in RAM. INFO 2026-06-08 09:43:59 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr6:32,979,973 INFO 2026-06-08 09:43:59 MarkDuplicates Tracking 622296 as yet unmatched pairs. 28224 records in RAM. INFO 2026-06-08 09:44:01 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr6:33,301,744 INFO 2026-06-08 09:44:01 MarkDuplicates Tracking 621058 as yet unmatched pairs. 26984 records in RAM. INFO 2026-06-08 09:44:04 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr6:34,590,488 INFO 2026-06-08 09:44:04 MarkDuplicates Tracking 618086 as yet unmatched pairs. 24005 records in RAM. INFO 2026-06-08 09:44:06 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr6:39,907,094 INFO 2026-06-08 09:44:06 MarkDuplicates Tracking 616715 as yet unmatched pairs. 22610 records in RAM. INFO 2026-06-08 09:44:09 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr6:43,186,330 INFO 2026-06-08 09:44:09 MarkDuplicates Tracking 615062 as yet unmatched pairs. 20945 records in RAM. INFO 2026-06-08 09:44:11 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr6:47,606,236 INFO 2026-06-08 09:44:11 MarkDuplicates Tracking 613849 as yet unmatched pairs. 19711 records in RAM. INFO 2026-06-08 09:44:14 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr6:56,640,360 INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 612680 as yet unmatched pairs. 18513 records in RAM. INFO 2026-06-08 09:44:16 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr6:75,133,411 INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 611794 as yet unmatched pairs. 17601 records in RAM. INFO 2026-06-08 09:44:19 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr6:82,365,826 INFO 2026-06-08 09:44:19 MarkDuplicates Tracking 610171 as yet unmatched pairs. 15961 records in RAM. INFO 2026-06-08 09:44:21 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr6:96,537,433 INFO 2026-06-08 09:44:21 MarkDuplicates Tracking 608668 as yet unmatched pairs. 14438 records in RAM. INFO 2026-06-08 09:44:23 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr6:109,453,783 INFO 2026-06-08 09:44:23 MarkDuplicates Tracking 607502 as yet unmatched pairs. 13245 records in RAM. INFO 2026-06-08 09:44:25 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr6:117,675,672 INFO 2026-06-08 09:44:25 MarkDuplicates Tracking 605796 as yet unmatched pairs. 11523 records in RAM. INFO 2026-06-08 09:44:28 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr6:130,956,112 INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 604515 as yet unmatched pairs. 10221 records in RAM. INFO 2026-06-08 09:44:30 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr6:137,016,992 INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 603074 as yet unmatched pairs. 8769 records in RAM. INFO 2026-06-08 09:44:33 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr6:145,926,241 INFO 2026-06-08 09:44:33 MarkDuplicates Tracking 601661 as yet unmatched pairs. 7338 records in RAM. INFO 2026-06-08 09:44:35 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr6:151,808,141 INFO 2026-06-08 09:44:35 MarkDuplicates Tracking 602408 as yet unmatched pairs. 8066 records in RAM. INFO 2026-06-08 09:44:38 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr6:156,829,352 INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 598942 as yet unmatched pairs. 4575 records in RAM. INFO 2026-06-08 09:44:40 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr6:159,225,579 INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 597292 as yet unmatched pairs. 2920 records in RAM. INFO 2026-06-08 09:44:42 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr6:167,827,109 INFO 2026-06-08 09:44:42 MarkDuplicates Tracking 595944 as yet unmatched pairs. 1548 records in RAM. INFO 2026-06-08 09:44:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr7:253,131 INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 594411 as yet unmatched pairs. 40792 records in RAM. INFO 2026-06-08 09:44:48 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr7:4,790,488 INFO 2026-06-08 09:44:48 MarkDuplicates Tracking 592497 as yet unmatched pairs. 38869 records in RAM. INFO 2026-06-08 09:44:50 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,093 INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 595251 as yet unmatched pairs. 41614 records in RAM. INFO 2026-06-08 09:44:53 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr7:6,400,139 INFO 2026-06-08 09:44:53 MarkDuplicates Tracking 589589 as yet unmatched pairs. 35942 records in RAM. INFO 2026-06-08 09:44:55 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr7:20,391,481 INFO 2026-06-08 09:44:55 MarkDuplicates Tracking 588034 as yet unmatched pairs. 34365 records in RAM. INFO 2026-06-08 09:44:57 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr7:30,594,945 INFO 2026-06-08 09:44:57 MarkDuplicates Tracking 586738 as yet unmatched pairs. 33050 records in RAM. INFO 2026-06-08 09:44:59 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr7:42,045,415 INFO 2026-06-08 09:44:59 MarkDuplicates Tracking 585330 as yet unmatched pairs. 31630 records in RAM. INFO 2026-06-08 09:45:02 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr7:44,113,619 INFO 2026-06-08 09:45:02 MarkDuplicates Tracking 585255 as yet unmatched pairs. 31545 records in RAM. INFO 2026-06-08 09:45:04 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr7:55,151,323 INFO 2026-06-08 09:45:04 MarkDuplicates Tracking 582656 as yet unmatched pairs. 28925 records in RAM. INFO 2026-06-08 09:45:06 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr7:70,771,586 INFO 2026-06-08 09:45:06 MarkDuplicates Tracking 581763 as yet unmatched pairs. 28008 records in RAM. INFO 2026-06-08 09:45:09 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr7:73,595,858 INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 580213 as yet unmatched pairs. 26451 records in RAM. INFO 2026-06-08 09:45:11 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr7:75,196,782 INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 579391 as yet unmatched pairs. 25613 records in RAM. INFO 2026-06-08 09:45:13 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr7:76,482,933 INFO 2026-06-08 09:45:13 MarkDuplicates Tracking 577857 as yet unmatched pairs. 24063 records in RAM. INFO 2026-06-08 09:45:15 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr7:88,279,449 INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 576774 as yet unmatched pairs. 22961 records in RAM. INFO 2026-06-08 09:45:18 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr7:93,131,622 INFO 2026-06-08 09:45:18 MarkDuplicates Tracking 575616 as yet unmatched pairs. 21782 records in RAM. INFO 2026-06-08 09:45:20 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr7:94,409,409 INFO 2026-06-08 09:45:20 MarkDuplicates Tracking 577542 as yet unmatched pairs. 23703 records in RAM. INFO 2026-06-08 09:45:23 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr7:94,420,575 INFO 2026-06-08 09:45:23 MarkDuplicates Tracking 573757 as yet unmatched pairs. 19900 records in RAM. INFO 2026-06-08 09:45:26 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr7:94,430,266 INFO 2026-06-08 09:45:26 MarkDuplicates Tracking 574827 as yet unmatched pairs. 20956 records in RAM. INFO 2026-06-08 09:45:28 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr7:99,494,467 INFO 2026-06-08 09:45:28 MarkDuplicates Tracking 569428 as yet unmatched pairs. 15551 records in RAM. INFO 2026-06-08 09:45:30 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr7:100,430,167 INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 568013 as yet unmatched pairs. 14135 records in RAM. INFO 2026-06-08 09:45:33 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr7:101,240,158 INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 566449 as yet unmatched pairs. 12555 records in RAM. INFO 2026-06-08 09:45:35 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr7:102,595,345 INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 566341 as yet unmatched pairs. 12438 records in RAM. INFO 2026-06-08 09:45:37 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr7:106,284,549 INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 564565 as yet unmatched pairs. 10660 records in RAM. INFO 2026-06-08 09:45:39 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr7:121,015,827 INFO 2026-06-08 09:45:39 MarkDuplicates Tracking 563113 as yet unmatched pairs. 9189 records in RAM. INFO 2026-06-08 09:45:41 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr7:128,754,376 INFO 2026-06-08 09:45:41 MarkDuplicates Tracking 561999 as yet unmatched pairs. 8065 records in RAM. INFO 2026-06-08 09:45:44 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr7:135,644,933 INFO 2026-06-08 09:45:44 MarkDuplicates Tracking 560610 as yet unmatched pairs. 6654 records in RAM. INFO 2026-06-08 09:45:46 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr7:140,808,862 INFO 2026-06-08 09:45:46 MarkDuplicates Tracking 559516 as yet unmatched pairs. 5548 records in RAM. INFO 2026-06-08 09:45:48 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr7:144,363,354 INFO 2026-06-08 09:45:48 MarkDuplicates Tracking 557803 as yet unmatched pairs. 3823 records in RAM. INFO 2026-06-08 09:45:51 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr7:151,064,262 INFO 2026-06-08 09:45:51 MarkDuplicates Tracking 556387 as yet unmatched pairs. 2393 records in RAM. INFO 2026-06-08 09:45:54 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr7:155,706,909 INFO 2026-06-08 09:45:54 MarkDuplicates Tracking 554671 as yet unmatched pairs. 672 records in RAM. INFO 2026-06-08 09:45:56 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr8:11,838,444 INFO 2026-06-08 09:45:56 MarkDuplicates Tracking 553353 as yet unmatched pairs. 27445 records in RAM. INFO 2026-06-08 09:45:59 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr8:17,972,419 INFO 2026-06-08 09:45:59 MarkDuplicates Tracking 552230 as yet unmatched pairs. 26316 records in RAM. INFO 2026-06-08 09:46:01 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr8:22,613,040 INFO 2026-06-08 09:46:01 MarkDuplicates Tracking 550857 as yet unmatched pairs. 24926 records in RAM. INFO 2026-06-08 09:46:03 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr8:27,515,767 INFO 2026-06-08 09:46:03 MarkDuplicates Tracking 549068 as yet unmatched pairs. 23127 records in RAM. INFO 2026-06-08 09:46:06 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,501 INFO 2026-06-08 09:46:06 MarkDuplicates Tracking 548604 as yet unmatched pairs. 22644 records in RAM. INFO 2026-06-08 09:46:09 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr8:38,428,373 INFO 2026-06-08 09:46:09 MarkDuplicates Tracking 547137 as yet unmatched pairs. 21168 records in RAM. INFO 2026-06-08 09:46:11 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr8:43,059,144 INFO 2026-06-08 09:46:11 MarkDuplicates Tracking 544425 as yet unmatched pairs. 18452 records in RAM. INFO 2026-06-08 09:46:13 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr8:56,980,005 INFO 2026-06-08 09:46:13 MarkDuplicates Tracking 542992 as yet unmatched pairs. 17008 records in RAM. INFO 2026-06-08 09:46:16 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr8:70,126,941 INFO 2026-06-08 09:46:16 MarkDuplicates Tracking 542201 as yet unmatched pairs. 16206 records in RAM. INFO 2026-06-08 09:46:18 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr8:86,431,634 INFO 2026-06-08 09:46:18 MarkDuplicates Tracking 540641 as yet unmatched pairs. 14618 records in RAM. INFO 2026-06-08 09:46:21 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr8:98,706,466 INFO 2026-06-08 09:46:21 MarkDuplicates Tracking 539095 as yet unmatched pairs. 13054 records in RAM. INFO 2026-06-08 09:46:23 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr8:102,313,906 INFO 2026-06-08 09:46:23 MarkDuplicates Tracking 537982 as yet unmatched pairs. 11937 records in RAM. INFO 2026-06-08 09:46:26 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr8:115,604,521 INFO 2026-06-08 09:46:26 MarkDuplicates Tracking 537714 as yet unmatched pairs. 11643 records in RAM. INFO 2026-06-08 09:46:28 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr8:123,254,368 INFO 2026-06-08 09:46:28 MarkDuplicates Tracking 535054 as yet unmatched pairs. 8979 records in RAM. INFO 2026-06-08 09:46:30 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr8:138,598,809 INFO 2026-06-08 09:46:30 MarkDuplicates Tracking 533450 as yet unmatched pairs. 7363 records in RAM. INFO 2026-06-08 09:46:33 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr8:143,795,460 INFO 2026-06-08 09:46:33 MarkDuplicates Tracking 531813 as yet unmatched pairs. 5709 records in RAM. INFO 2026-06-08 09:46:35 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,738 INFO 2026-06-08 09:46:35 MarkDuplicates Tracking 530903 as yet unmatched pairs. 4799 records in RAM. INFO 2026-06-08 09:46:37 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr8:143,938,091 INFO 2026-06-08 09:46:37 MarkDuplicates Tracking 529544 as yet unmatched pairs. 3431 records in RAM. INFO 2026-06-08 09:46:39 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr8:144,521,076 INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 526772 as yet unmatched pairs. 646 records in RAM. INFO 2026-06-08 09:46:42 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr9:5,919,678 INFO 2026-06-08 09:46:42 MarkDuplicates Tracking 525550 as yet unmatched pairs. 30660 records in RAM. INFO 2026-06-08 09:46:44 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr9:19,347,000 INFO 2026-06-08 09:46:44 MarkDuplicates Tracking 524063 as yet unmatched pairs. 29140 records in RAM. INFO 2026-06-08 09:46:47 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr9:34,402,414 INFO 2026-06-08 09:46:47 MarkDuplicates Tracking 522735 as yet unmatched pairs. 27805 records in RAM. INFO 2026-06-08 09:46:49 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr9:35,721,669 INFO 2026-06-08 09:46:49 MarkDuplicates Tracking 521443 as yet unmatched pairs. 26508 records in RAM. INFO 2026-06-08 09:46:51 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr9:68,247,656 INFO 2026-06-08 09:46:51 MarkDuplicates Tracking 519783 as yet unmatched pairs. 24812 records in RAM. INFO 2026-06-08 09:46:54 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr9:84,745,050 INFO 2026-06-08 09:46:54 MarkDuplicates Tracking 518769 as yet unmatched pairs. 23786 records in RAM. INFO 2026-06-08 09:46:56 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr9:92,514,811 INFO 2026-06-08 09:46:56 MarkDuplicates Tracking 517023 as yet unmatched pairs. 22026 records in RAM. INFO 2026-06-08 09:46:59 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr9:97,627,436 INFO 2026-06-08 09:46:59 MarkDuplicates Tracking 515619 as yet unmatched pairs. 20597 records in RAM. INFO 2026-06-08 09:47:01 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr9:107,283,665 INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 514451 as yet unmatched pairs. 19420 records in RAM. INFO 2026-06-08 09:47:03 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr9:113,290,730 INFO 2026-06-08 09:47:03 MarkDuplicates Tracking 512835 as yet unmatched pairs. 17781 records in RAM. INFO 2026-06-08 09:47:06 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr9:120,713,783 INFO 2026-06-08 09:47:06 MarkDuplicates Tracking 511259 as yet unmatched pairs. 16196 records in RAM. INFO 2026-06-08 09:47:09 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr9:124,353,585 INFO 2026-06-08 09:47:09 MarkDuplicates Tracking 509898 as yet unmatched pairs. 14830 records in RAM. INFO 2026-06-08 09:47:11 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr9:127,808,570 INFO 2026-06-08 09:47:11 MarkDuplicates Tracking 508255 as yet unmatched pairs. 13180 records in RAM. INFO 2026-06-08 09:47:13 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr9:128,588,861 INFO 2026-06-08 09:47:13 MarkDuplicates Tracking 506710 as yet unmatched pairs. 11622 records in RAM. INFO 2026-06-08 09:47:16 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr9:130,354,916 INFO 2026-06-08 09:47:16 MarkDuplicates Tracking 504932 as yet unmatched pairs. 9840 records in RAM. INFO 2026-06-08 09:47:18 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr9:131,629,144 INFO 2026-06-08 09:47:18 MarkDuplicates Tracking 503773 as yet unmatched pairs. 8677 records in RAM. INFO 2026-06-08 09:47:20 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr9:134,041,786 INFO 2026-06-08 09:47:20 MarkDuplicates Tracking 502175 as yet unmatched pairs. 7069 records in RAM. INFO 2026-06-08 09:47:22 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr9:134,820,184 INFO 2026-06-08 09:47:22 MarkDuplicates Tracking 502107 as yet unmatched pairs. 6982 records in RAM. INFO 2026-06-08 09:47:25 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr9:136,496,986 INFO 2026-06-08 09:47:25 MarkDuplicates Tracking 498473 as yet unmatched pairs. 3348 records in RAM. INFO 2026-06-08 09:47:27 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr9:137,175,366 INFO 2026-06-08 09:47:27 MarkDuplicates Tracking 496701 as yet unmatched pairs. 1571 records in RAM. INFO 2026-06-08 09:47:30 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr10:3,148,183 INFO 2026-06-08 09:47:30 MarkDuplicates Tracking 494830 as yet unmatched pairs. 27902 records in RAM. INFO 2026-06-08 09:47:32 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr10:8,063,999 INFO 2026-06-08 09:47:32 MarkDuplicates Tracking 494077 as yet unmatched pairs. 27140 records in RAM. INFO 2026-06-08 09:47:35 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr10:17,237,262 INFO 2026-06-08 09:47:35 MarkDuplicates Tracking 493683 as yet unmatched pairs. 26736 records in RAM. INFO 2026-06-08 09:47:37 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr10:27,033,231 INFO 2026-06-08 09:47:37 MarkDuplicates Tracking 490522 as yet unmatched pairs. 23559 records in RAM. INFO 2026-06-08 09:47:39 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr10:32,032,741 INFO 2026-06-08 09:47:39 MarkDuplicates Tracking 489902 as yet unmatched pairs. 22929 records in RAM. INFO 2026-06-08 09:47:42 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr10:37,158,576 INFO 2026-06-08 09:47:42 MarkDuplicates Tracking 488935 as yet unmatched pairs. 21956 records in RAM. INFO 2026-06-08 09:47:44 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr10:37,199,772 INFO 2026-06-08 09:47:44 MarkDuplicates Tracking 489520 as yet unmatched pairs. 22538 records in RAM. INFO 2026-06-08 09:47:47 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr10:45,700,017 INFO 2026-06-08 09:47:47 MarkDuplicates Tracking 486112 as yet unmatched pairs. 19096 records in RAM. INFO 2026-06-08 09:47:49 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr10:48,828,804 INFO 2026-06-08 09:47:49 MarkDuplicates Tracking 485266 as yet unmatched pairs. 18246 records in RAM. INFO 2026-06-08 09:47:51 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr10:62,057,171 INFO 2026-06-08 09:47:51 MarkDuplicates Tracking 483929 as yet unmatched pairs. 16883 records in RAM. INFO 2026-06-08 09:47:53 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr10:70,538,904 INFO 2026-06-08 09:47:53 MarkDuplicates Tracking 482503 as yet unmatched pairs. 15445 records in RAM. INFO 2026-06-08 09:47:55 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr10:73,796,893 INFO 2026-06-08 09:47:55 MarkDuplicates Tracking 481141 as yet unmatched pairs. 14071 records in RAM. INFO 2026-06-08 09:47:58 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr10:78,037,259 INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 479809 as yet unmatched pairs. 12737 records in RAM. INFO 2026-06-08 09:48:00 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr10:87,441,365 INFO 2026-06-08 09:48:00 MarkDuplicates Tracking 478243 as yet unmatched pairs. 11163 records in RAM. INFO 2026-06-08 09:48:03 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr10:93,409,573 INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 477098 as yet unmatched pairs. 10005 records in RAM. INFO 2026-06-08 09:48:05 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr10:98,422,494 INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 475678 as yet unmatched pairs. 8583 records in RAM. INFO 2026-06-08 09:48:07 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr10:102,158,181 INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 474201 as yet unmatched pairs. 7088 records in RAM. INFO 2026-06-08 09:48:10 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr10:110,118,637 INFO 2026-06-08 09:48:10 MarkDuplicates Tracking 472812 as yet unmatched pairs. 5685 records in RAM. INFO 2026-06-08 09:48:12 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr10:116,929,973 INFO 2026-06-08 09:48:12 MarkDuplicates Tracking 472089 as yet unmatched pairs. 4953 records in RAM. INFO 2026-06-08 09:48:14 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr10:122,461,661 INFO 2026-06-08 09:48:14 MarkDuplicates Tracking 469873 as yet unmatched pairs. 2733 records in RAM. INFO 2026-06-08 09:48:17 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr10:127,362,136 INFO 2026-06-08 09:48:17 MarkDuplicates Tracking 468255 as yet unmatched pairs. 1098 records in RAM. INFO 2026-06-08 09:48:20 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr11:294,391 INFO 2026-06-08 09:48:20 MarkDuplicates Tracking 467965 as yet unmatched pairs. 51974 records in RAM. INFO 2026-06-08 09:48:22 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:613,203 INFO 2026-06-08 09:48:22 MarkDuplicates Tracking 464974 as yet unmatched pairs. 48981 records in RAM. INFO 2026-06-08 09:48:25 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr11:1,243,260 INFO 2026-06-08 09:48:25 MarkDuplicates Tracking 462899 as yet unmatched pairs. 46896 records in RAM. INFO 2026-06-08 09:48:27 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr11:1,880,093 INFO 2026-06-08 09:48:27 MarkDuplicates Tracking 461926 as yet unmatched pairs. 45921 records in RAM. INFO 2026-06-08 09:48:29 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr11:6,391,437 INFO 2026-06-08 09:48:29 MarkDuplicates Tracking 460188 as yet unmatched pairs. 44178 records in RAM. INFO 2026-06-08 09:48:31 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr11:8,750,627 INFO 2026-06-08 09:48:31 MarkDuplicates Tracking 458631 as yet unmatched pairs. 42605 records in RAM. INFO 2026-06-08 09:48:34 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr11:12,226,298 INFO 2026-06-08 09:48:34 MarkDuplicates Tracking 457275 as yet unmatched pairs. 41241 records in RAM. INFO 2026-06-08 09:48:36 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr11:18,744,171 INFO 2026-06-08 09:48:36 MarkDuplicates Tracking 455716 as yet unmatched pairs. 39667 records in RAM. INFO 2026-06-08 09:48:39 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr11:34,656,926 INFO 2026-06-08 09:48:39 MarkDuplicates Tracking 454615 as yet unmatched pairs. 38556 records in RAM. INFO 2026-06-08 09:48:41 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr11:46,347,623 INFO 2026-06-08 09:48:41 MarkDuplicates Tracking 453269 as yet unmatched pairs. 37197 records in RAM. INFO 2026-06-08 09:48:43 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr11:47,710,416 INFO 2026-06-08 09:48:43 MarkDuplicates Tracking 451553 as yet unmatched pairs. 35467 records in RAM. INFO 2026-06-08 09:48:45 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr11:57,711,950 INFO 2026-06-08 09:48:45 MarkDuplicates Tracking 450109 as yet unmatched pairs. 34012 records in RAM. INFO 2026-06-08 09:48:48 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr11:61,008,557 INFO 2026-06-08 09:48:48 MarkDuplicates Tracking 448631 as yet unmatched pairs. 32519 records in RAM. INFO 2026-06-08 09:48:50 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr11:62,243,294 INFO 2026-06-08 09:48:50 MarkDuplicates Tracking 455728 as yet unmatched pairs. 39601 records in RAM. INFO 2026-06-08 09:48:52 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr11:62,272,975 INFO 2026-06-08 09:48:52 MarkDuplicates Tracking 458733 as yet unmatched pairs. 42599 records in RAM. INFO 2026-06-08 09:48:55 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr11:62,524,670 INFO 2026-06-08 09:48:55 MarkDuplicates Tracking 445921 as yet unmatched pairs. 29786 records in RAM. INFO 2026-06-08 09:48:57 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr11:62,533,482 INFO 2026-06-08 09:48:57 MarkDuplicates Tracking 444530 as yet unmatched pairs. 28389 records in RAM. INFO 2026-06-08 09:49:00 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr11:62,881,098 INFO 2026-06-08 09:49:00 MarkDuplicates Tracking 442058 as yet unmatched pairs. 25910 records in RAM. INFO 2026-06-08 09:49:02 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr11:64,765,873 INFO 2026-06-08 09:49:02 MarkDuplicates Tracking 440490 as yet unmatched pairs. 24335 records in RAM. INFO 2026-06-08 09:49:04 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr11:65,502,324 INFO 2026-06-08 09:49:04 MarkDuplicates Tracking 438563 as yet unmatched pairs. 22393 records in RAM. INFO 2026-06-08 09:49:07 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr11:65,654,942 INFO 2026-06-08 09:49:07 MarkDuplicates Tracking 437367 as yet unmatched pairs. 21187 records in RAM. INFO 2026-06-08 09:49:09 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr11:66,333,293 INFO 2026-06-08 09:49:09 MarkDuplicates Tracking 435059 as yet unmatched pairs. 18878 records in RAM. INFO 2026-06-08 09:49:11 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr11:67,420,450 INFO 2026-06-08 09:49:11 MarkDuplicates Tracking 433240 as yet unmatched pairs. 17053 records in RAM. INFO 2026-06-08 09:49:14 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr11:69,643,040 INFO 2026-06-08 09:49:14 MarkDuplicates Tracking 432367 as yet unmatched pairs. 16168 records in RAM. INFO 2026-06-08 09:49:16 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr11:72,015,890 INFO 2026-06-08 09:49:16 MarkDuplicates Tracking 430533 as yet unmatched pairs. 14322 records in RAM. INFO 2026-06-08 09:49:19 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr11:73,891,145 INFO 2026-06-08 09:49:19 MarkDuplicates Tracking 428444 as yet unmatched pairs. 12227 records in RAM. INFO 2026-06-08 09:49:21 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr11:77,685,155 INFO 2026-06-08 09:49:21 MarkDuplicates Tracking 427136 as yet unmatched pairs. 10911 records in RAM. INFO 2026-06-08 09:49:23 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr11:89,021,175 INFO 2026-06-08 09:49:23 MarkDuplicates Tracking 425661 as yet unmatched pairs. 9406 records in RAM. INFO 2026-06-08 09:49:26 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr11:103,091,791 INFO 2026-06-08 09:49:26 MarkDuplicates Tracking 424457 as yet unmatched pairs. 8188 records in RAM. INFO 2026-06-08 09:49:28 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr11:114,312,331 INFO 2026-06-08 09:49:28 MarkDuplicates Tracking 423493 as yet unmatched pairs. 7221 records in RAM. INFO 2026-06-08 09:49:31 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr11:118,504,981 INFO 2026-06-08 09:49:31 MarkDuplicates Tracking 421752 as yet unmatched pairs. 5473 records in RAM. INFO 2026-06-08 09:49:33 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr11:119,110,853 INFO 2026-06-08 09:49:33 MarkDuplicates Tracking 420104 as yet unmatched pairs. 3821 records in RAM. INFO 2026-06-08 09:49:36 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr11:124,632,186 INFO 2026-06-08 09:49:36 MarkDuplicates Tracking 418554 as yet unmatched pairs. 2265 records in RAM. INFO 2026-06-08 09:49:38 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr11:130,129,135 INFO 2026-06-08 09:49:38 MarkDuplicates Tracking 417371 as yet unmatched pairs. 1071 records in RAM. INFO 2026-06-08 09:49:41 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr12:887,223 INFO 2026-06-08 09:49:41 MarkDuplicates Tracking 416014 as yet unmatched pairs. 44334 records in RAM. INFO 2026-06-08 09:49:43 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr12:6,333,392 INFO 2026-06-08 09:49:43 MarkDuplicates Tracking 414776 as yet unmatched pairs. 43082 records in RAM. INFO 2026-06-08 09:49:45 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr12:6,933,857 INFO 2026-06-08 09:49:45 MarkDuplicates Tracking 412923 as yet unmatched pairs. 41229 records in RAM. INFO 2026-06-08 09:49:48 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 3s. Last read position: chr12:7,099,969 INFO 2026-06-08 09:49:48 MarkDuplicates Tracking 411522 as yet unmatched pairs. 39824 records in RAM. INFO 2026-06-08 09:49:50 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr12:9,663,797 INFO 2026-06-08 09:49:50 MarkDuplicates Tracking 410074 as yet unmatched pairs. 38372 records in RAM. INFO 2026-06-08 09:49:53 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr12:14,497,942 INFO 2026-06-08 09:49:53 MarkDuplicates Tracking 409104 as yet unmatched pairs. 37397 records in RAM. INFO 2026-06-08 09:49:55 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr12:21,635,588 INFO 2026-06-08 09:49:55 MarkDuplicates Tracking 408217 as yet unmatched pairs. 36509 records in RAM. INFO 2026-06-08 09:49:57 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr12:32,010,073 INFO 2026-06-08 09:49:57 MarkDuplicates Tracking 406279 as yet unmatched pairs. 34565 records in RAM. INFO 2026-06-08 09:50:00 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr12:40,488,181 INFO 2026-06-08 09:50:00 MarkDuplicates Tracking 406078 as yet unmatched pairs. 34354 records in RAM. INFO 2026-06-08 09:50:02 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr12:47,078,428 INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 403539 as yet unmatched pairs. 31791 records in RAM. INFO 2026-06-08 09:50:04 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr12:49,049,207 INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 402040 as yet unmatched pairs. 30280 records in RAM. INFO 2026-06-08 09:50:07 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr12:49,796,380 INFO 2026-06-08 09:50:07 MarkDuplicates Tracking 400865 as yet unmatched pairs. 29099 records in RAM. INFO 2026-06-08 09:50:09 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr12:52,233,480 INFO 2026-06-08 09:50:09 MarkDuplicates Tracking 399286 as yet unmatched pairs. 27516 records in RAM. INFO 2026-06-08 09:50:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr12:53,406,665 INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 397789 as yet unmatched pairs. 26012 records in RAM. INFO 2026-06-08 09:50:14 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr12:54,282,865 INFO 2026-06-08 09:50:14 MarkDuplicates Tracking 397304 as yet unmatched pairs. 25522 records in RAM. INFO 2026-06-08 09:50:16 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr12:56,101,140 INFO 2026-06-08 09:50:16 MarkDuplicates Tracking 395637 as yet unmatched pairs. 23853 records in RAM. INFO 2026-06-08 09:50:18 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr12:56,601,898 INFO 2026-06-08 09:50:18 MarkDuplicates Tracking 394125 as yet unmatched pairs. 22333 records in RAM. INFO 2026-06-08 09:50:21 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr12:57,102,411 INFO 2026-06-08 09:50:21 MarkDuplicates Tracking 394417 as yet unmatched pairs. 22623 records in RAM. INFO 2026-06-08 09:50:24 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 3s. Last read position: chr12:57,187,269 INFO 2026-06-08 09:50:24 MarkDuplicates Tracking 391654 as yet unmatched pairs. 19859 records in RAM. INFO 2026-06-08 09:50:26 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr12:57,525,541 INFO 2026-06-08 09:50:26 MarkDuplicates Tracking 389476 as yet unmatched pairs. 17672 records in RAM. INFO 2026-06-08 09:50:28 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr12:64,694,761 INFO 2026-06-08 09:50:28 MarkDuplicates Tracking 387947 as yet unmatched pairs. 16136 records in RAM. INFO 2026-06-08 09:50:30 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr12:71,656,943 INFO 2026-06-08 09:50:30 MarkDuplicates Tracking 386942 as yet unmatched pairs. 15118 records in RAM. INFO 2026-06-08 09:50:33 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr12:91,108,865 INFO 2026-06-08 09:50:33 MarkDuplicates Tracking 387494 as yet unmatched pairs. 15661 records in RAM. INFO 2026-06-08 09:50:35 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr12:95,787,220 INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 385496 as yet unmatched pairs. 13658 records in RAM. INFO 2026-06-08 09:50:38 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr12:103,947,658 INFO 2026-06-08 09:50:38 MarkDuplicates Tracking 383374 as yet unmatched pairs. 11533 records in RAM. INFO 2026-06-08 09:50:40 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr12:109,247,640 INFO 2026-06-08 09:50:40 MarkDuplicates Tracking 381411 as yet unmatched pairs. 9565 records in RAM. INFO 2026-06-08 09:50:43 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr12:112,203,711 INFO 2026-06-08 09:50:43 MarkDuplicates Tracking 379957 as yet unmatched pairs. 8107 records in RAM. INFO 2026-06-08 09:50:45 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr12:116,019,766 INFO 2026-06-08 09:50:45 MarkDuplicates Tracking 378777 as yet unmatched pairs. 6922 records in RAM. INFO 2026-06-08 09:50:48 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr12:121,221,962 INFO 2026-06-08 09:50:48 MarkDuplicates Tracking 377119 as yet unmatched pairs. 5257 records in RAM. INFO 2026-06-08 09:50:50 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr12:123,261,731 INFO 2026-06-08 09:50:50 MarkDuplicates Tracking 375767 as yet unmatched pairs. 3904 records in RAM. INFO 2026-06-08 09:50:52 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr12:124,912,421 INFO 2026-06-08 09:50:52 MarkDuplicates Tracking 374306 as yet unmatched pairs. 2435 records in RAM. INFO 2026-06-08 09:50:54 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr12:132,786,485 INFO 2026-06-08 09:50:54 MarkDuplicates Tracking 372467 as yet unmatched pairs. 587 records in RAM. INFO 2026-06-08 09:50:57 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr13:22,843,364 INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 370969 as yet unmatched pairs. 11791 records in RAM. INFO 2026-06-08 09:51:00 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr13:30,657,666 INFO 2026-06-08 09:51:00 MarkDuplicates Tracking 369762 as yet unmatched pairs. 10576 records in RAM. INFO 2026-06-08 09:51:02 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr13:37,580,623 INFO 2026-06-08 09:51:02 MarkDuplicates Tracking 370709 as yet unmatched pairs. 11517 records in RAM. INFO 2026-06-08 09:51:04 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr13:45,337,255 INFO 2026-06-08 09:51:04 MarkDuplicates Tracking 369266 as yet unmatched pairs. 10065 records in RAM. INFO 2026-06-08 09:51:07 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr13:51,975,132 INFO 2026-06-08 09:51:07 MarkDuplicates Tracking 365833 as yet unmatched pairs. 6620 records in RAM. INFO 2026-06-08 09:51:09 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr13:77,326,579 INFO 2026-06-08 09:51:09 MarkDuplicates Tracking 364825 as yet unmatched pairs. 5597 records in RAM. INFO 2026-06-08 09:51:11 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr13:99,536,630 INFO 2026-06-08 09:51:11 MarkDuplicates Tracking 364065 as yet unmatched pairs. 4831 records in RAM. INFO 2026-06-08 09:51:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr13:110,450,321 INFO 2026-06-08 09:51:14 MarkDuplicates Tracking 361732 as yet unmatched pairs. 2495 records in RAM. INFO 2026-06-08 09:51:16 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr13:113,548,377 INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 360132 as yet unmatched pairs. 886 records in RAM. INFO 2026-06-08 09:51:19 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr14:21,231,041 INFO 2026-06-08 09:51:19 MarkDuplicates Tracking 360303 as yet unmatched pairs. 28304 records in RAM. INFO 2026-06-08 09:51:21 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr14:23,049,712 INFO 2026-06-08 09:51:21 MarkDuplicates Tracking 356929 as yet unmatched pairs. 24926 records in RAM. INFO 2026-06-08 09:51:24 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr14:24,186,733 INFO 2026-06-08 09:51:24 MarkDuplicates Tracking 355284 as yet unmatched pairs. 23275 records in RAM. INFO 2026-06-08 09:51:26 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 2s. Last read position: chr14:31,343,923 INFO 2026-06-08 09:51:26 MarkDuplicates Tracking 353663 as yet unmatched pairs. 21654 records in RAM. INFO 2026-06-08 09:51:28 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr14:39,176,536 INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 352513 as yet unmatched pairs. 20492 records in RAM. INFO 2026-06-08 09:51:30 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr14:50,468,661 INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 351379 as yet unmatched pairs. 19349 records in RAM. INFO 2026-06-08 09:51:33 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr14:55,661,588 INFO 2026-06-08 09:51:33 MarkDuplicates Tracking 350656 as yet unmatched pairs. 18610 records in RAM. INFO 2026-06-08 09:51:35 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr14:64,087,760 INFO 2026-06-08 09:51:35 MarkDuplicates Tracking 348615 as yet unmatched pairs. 16563 records in RAM. INFO 2026-06-08 09:51:38 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr14:68,877,092 INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 347633 as yet unmatched pairs. 15573 records in RAM. INFO 2026-06-08 09:51:40 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr14:73,211,851 INFO 2026-06-08 09:51:40 MarkDuplicates Tracking 345744 as yet unmatched pairs. 13681 records in RAM. INFO 2026-06-08 09:51:42 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr14:74,809,398 INFO 2026-06-08 09:51:42 MarkDuplicates Tracking 344187 as yet unmatched pairs. 12118 records in RAM. INFO 2026-06-08 09:51:45 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr14:77,552,175 INFO 2026-06-08 09:51:45 MarkDuplicates Tracking 342629 as yet unmatched pairs. 10557 records in RAM. INFO 2026-06-08 09:51:47 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr14:92,000,002 INFO 2026-06-08 09:51:47 MarkDuplicates Tracking 341213 as yet unmatched pairs. 9135 records in RAM. INFO 2026-06-08 09:51:50 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr14:95,203,971 INFO 2026-06-08 09:51:50 MarkDuplicates Tracking 339906 as yet unmatched pairs. 7821 records in RAM. INFO 2026-06-08 09:51:52 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr14:101,979,488 INFO 2026-06-08 09:51:52 MarkDuplicates Tracking 338536 as yet unmatched pairs. 6430 records in RAM. INFO 2026-06-08 09:51:55 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr14:103,340,547 INFO 2026-06-08 09:51:55 MarkDuplicates Tracking 337040 as yet unmatched pairs. 4932 records in RAM. INFO 2026-06-08 09:51:57 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr14:104,954,017 INFO 2026-06-08 09:51:57 MarkDuplicates Tracking 335161 as yet unmatched pairs. 3052 records in RAM. INFO 2026-06-08 09:51:59 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr14:105,644,598 INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 335391 as yet unmatched pairs. 3278 records in RAM. INFO 2026-06-08 09:52:01 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,856 INFO 2026-06-08 09:52:01 MarkDuplicates Tracking 334874 as yet unmatched pairs. 2757 records in RAM. INFO 2026-06-08 09:52:04 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr15:24,967,979 INFO 2026-06-08 09:52:04 MarkDuplicates Tracking 331883 as yet unmatched pairs. 24214 records in RAM. INFO 2026-06-08 09:52:06 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr15:32,730,883 INFO 2026-06-08 09:52:06 MarkDuplicates Tracking 330971 as yet unmatched pairs. 23294 records in RAM. INFO 2026-06-08 09:52:08 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 2s. Last read position: chr15:39,592,999 INFO 2026-06-08 09:52:08 MarkDuplicates Tracking 330255 as yet unmatched pairs. 22569 records in RAM. INFO 2026-06-08 09:52:11 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr15:41,767,229 INFO 2026-06-08 09:52:11 MarkDuplicates Tracking 328080 as yet unmatched pairs. 20387 records in RAM. INFO 2026-06-08 09:52:13 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr15:43,528,004 INFO 2026-06-08 09:52:13 MarkDuplicates Tracking 326727 as yet unmatched pairs. 19033 records in RAM. INFO 2026-06-08 09:52:15 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr15:45,147,925 INFO 2026-06-08 09:52:15 MarkDuplicates Tracking 325311 as yet unmatched pairs. 17612 records in RAM. INFO 2026-06-08 09:52:18 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 2s. Last read position: chr15:50,439,149 INFO 2026-06-08 09:52:18 MarkDuplicates Tracking 323938 as yet unmatched pairs. 16236 records in RAM. INFO 2026-06-08 09:52:20 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 2s. Last read position: chr15:56,921,025 INFO 2026-06-08 09:52:20 MarkDuplicates Tracking 324041 as yet unmatched pairs. 16332 records in RAM. INFO 2026-06-08 09:52:23 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr15:61,936,619 INFO 2026-06-08 09:52:23 MarkDuplicates Tracking 321576 as yet unmatched pairs. 13860 records in RAM. INFO 2026-06-08 09:52:25 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr15:64,414,143 INFO 2026-06-08 09:52:25 MarkDuplicates Tracking 319997 as yet unmatched pairs. 12278 records in RAM. INFO 2026-06-08 09:52:28 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 2s. Last read position: chr15:66,502,613 INFO 2026-06-08 09:52:28 MarkDuplicates Tracking 319062 as yet unmatched pairs. 11339 records in RAM. INFO 2026-06-08 09:52:31 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 2s. Last read position: chr15:71,737,764 INFO 2026-06-08 09:52:31 MarkDuplicates Tracking 317007 as yet unmatched pairs. 9269 records in RAM. INFO 2026-06-08 09:52:33 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 2s. Last read position: chr15:74,023,249 INFO 2026-06-08 09:52:33 MarkDuplicates Tracking 316198 as yet unmatched pairs. 8452 records in RAM. INFO 2026-06-08 09:52:36 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 2s. Last read position: chr15:75,639,701 INFO 2026-06-08 09:52:36 MarkDuplicates Tracking 313948 as yet unmatched pairs. 6201 records in RAM. INFO 2026-06-08 09:52:38 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 2s. Last read position: chr15:80,925,723 INFO 2026-06-08 09:52:38 MarkDuplicates Tracking 312366 as yet unmatched pairs. 4613 records in RAM. INFO 2026-06-08 09:52:40 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 2s. Last read position: chr15:85,639,425 INFO 2026-06-08 09:52:40 MarkDuplicates Tracking 311926 as yet unmatched pairs. 4169 records in RAM. INFO 2026-06-08 09:52:43 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr15:90,487,005 INFO 2026-06-08 09:52:43 MarkDuplicates Tracking 310112 as yet unmatched pairs. 2351 records in RAM. INFO 2026-06-08 09:52:45 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr15:100,896,018 INFO 2026-06-08 09:52:45 MarkDuplicates Tracking 308348 as yet unmatched pairs. 578 records in RAM. INFO 2026-06-08 09:52:48 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 2s. Last read position: chr16:658,286 INFO 2026-06-08 09:52:48 MarkDuplicates Tracking 306764 as yet unmatched pairs. 40731 records in RAM. INFO 2026-06-08 09:52:51 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr16:1,669,000 INFO 2026-06-08 09:52:51 MarkDuplicates Tracking 304673 as yet unmatched pairs. 38638 records in RAM. INFO 2026-06-08 09:52:53 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr16:2,115,599 INFO 2026-06-08 09:52:53 MarkDuplicates Tracking 302984 as yet unmatched pairs. 36946 records in RAM. INFO 2026-06-08 09:52:55 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr16:2,764,178 INFO 2026-06-08 09:52:55 MarkDuplicates Tracking 301667 as yet unmatched pairs. 35627 records in RAM. INFO 2026-06-08 09:52:58 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 2s. Last read position: chr16:3,408,659 INFO 2026-06-08 09:52:58 MarkDuplicates Tracking 299769 as yet unmatched pairs. 33723 records in RAM. INFO 2026-06-08 09:53:00 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr16:4,832,099 INFO 2026-06-08 09:53:00 MarkDuplicates Tracking 298272 as yet unmatched pairs. 32219 records in RAM. INFO 2026-06-08 09:53:02 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 2s. Last read position: chr16:11,927,674 INFO 2026-06-08 09:53:02 MarkDuplicates Tracking 296747 as yet unmatched pairs. 30686 records in RAM. INFO 2026-06-08 09:53:04 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr16:14,930,212 INFO 2026-06-08 09:53:04 MarkDuplicates Tracking 295891 as yet unmatched pairs. 29823 records in RAM. INFO 2026-06-08 09:53:06 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr16:16,294,673 INFO 2026-06-08 09:53:06 MarkDuplicates Tracking 294889 as yet unmatched pairs. 28818 records in RAM. INFO 2026-06-08 09:53:08 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,777 INFO 2026-06-08 09:53:08 MarkDuplicates Tracking 294843 as yet unmatched pairs. 28772 records in RAM. INFO 2026-06-08 09:53:10 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr16:18,876,174 INFO 2026-06-08 09:53:10 MarkDuplicates Tracking 293967 as yet unmatched pairs. 27890 records in RAM. INFO 2026-06-08 09:53:12 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr16:21,411,225 INFO 2026-06-08 09:53:12 MarkDuplicates Tracking 294146 as yet unmatched pairs. 28066 records in RAM. INFO 2026-06-08 09:53:14 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr16:21,895,688 INFO 2026-06-08 09:53:14 MarkDuplicates Tracking 292387 as yet unmatched pairs. 26305 records in RAM. INFO 2026-06-08 09:53:16 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,258 INFO 2026-06-08 09:53:16 MarkDuplicates Tracking 291858 as yet unmatched pairs. 25776 records in RAM. INFO 2026-06-08 09:53:18 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr16:28,342,875 INFO 2026-06-08 09:53:18 MarkDuplicates Tracking 290565 as yet unmatched pairs. 24481 records in RAM. INFO 2026-06-08 09:53:20 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr16:28,975,121 INFO 2026-06-08 09:53:20 MarkDuplicates Tracking 289571 as yet unmatched pairs. 23479 records in RAM. INFO 2026-06-08 09:53:22 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,695,106 INFO 2026-06-08 09:53:22 MarkDuplicates Tracking 288788 as yet unmatched pairs. 22694 records in RAM. INFO 2026-06-08 09:53:24 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr16:30,187,204 INFO 2026-06-08 09:53:24 MarkDuplicates Tracking 287408 as yet unmatched pairs. 21306 records in RAM. INFO 2026-06-08 09:53:26 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr16:30,668,897 INFO 2026-06-08 09:53:26 MarkDuplicates Tracking 286114 as yet unmatched pairs. 20011 records in RAM. INFO 2026-06-08 09:53:28 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 2s. Last read position: chr16:31,182,411 INFO 2026-06-08 09:53:28 MarkDuplicates Tracking 285509 as yet unmatched pairs. 19398 records in RAM. INFO 2026-06-08 09:53:30 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr16:34,161,248 INFO 2026-06-08 09:53:30 MarkDuplicates Tracking 282959 as yet unmatched pairs. 16843 records in RAM. INFO 2026-06-08 09:53:33 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr16:53,238,342 INFO 2026-06-08 09:53:33 MarkDuplicates Tracking 281879 as yet unmatched pairs. 15755 records in RAM. INFO 2026-06-08 09:53:35 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr16:55,502,777 INFO 2026-06-08 09:53:35 MarkDuplicates Tracking 281421 as yet unmatched pairs. 15289 records in RAM. INFO 2026-06-08 09:53:37 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr16:58,545,376 INFO 2026-06-08 09:53:37 MarkDuplicates Tracking 278605 as yet unmatched pairs. 12464 records in RAM. INFO 2026-06-08 09:53:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 2s. Last read position: chr16:67,247,333 INFO 2026-06-08 09:53:40 MarkDuplicates Tracking 276876 as yet unmatched pairs. 10733 records in RAM. INFO 2026-06-08 09:53:42 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr16:68,563,067 INFO 2026-06-08 09:53:42 MarkDuplicates Tracking 275492 as yet unmatched pairs. 9347 records in RAM. INFO 2026-06-08 09:53:44 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr16:70,473,286 INFO 2026-06-08 09:53:44 MarkDuplicates Tracking 273867 as yet unmatched pairs. 7722 records in RAM. INFO 2026-06-08 09:53:47 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr16:74,494,778 INFO 2026-06-08 09:53:47 MarkDuplicates Tracking 272712 as yet unmatched pairs. 6567 records in RAM. INFO 2026-06-08 09:53:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 2s. Last read position: chr16:81,445,221 INFO 2026-06-08 09:53:49 MarkDuplicates Tracking 270907 as yet unmatched pairs. 4753 records in RAM. INFO 2026-06-08 09:53:52 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr16:88,428,621 INFO 2026-06-08 09:53:52 MarkDuplicates Tracking 269859 as yet unmatched pairs. 3699 records in RAM. INFO 2026-06-08 09:53:54 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 2s. Last read position: chr16:89,279,484 INFO 2026-06-08 09:53:54 MarkDuplicates Tracking 267477 as yet unmatched pairs. 1307 records in RAM. INFO 2026-06-08 09:53:58 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 3s. Last read position: chr17:1,312,072 INFO 2026-06-08 09:53:58 MarkDuplicates Tracking 265728 as yet unmatched pairs. 106188 records in RAM. INFO 2026-06-08 09:54:00 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,178 INFO 2026-06-08 09:54:00 MarkDuplicates Tracking 264339 as yet unmatched pairs. 104796 records in RAM. INFO 2026-06-08 09:54:02 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:3,814,411 INFO 2026-06-08 09:54:02 MarkDuplicates Tracking 262574 as yet unmatched pairs. 103019 records in RAM. INFO 2026-06-08 09:54:04 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,780 INFO 2026-06-08 09:54:04 MarkDuplicates Tracking 261957 as yet unmatched pairs. 102401 records in RAM. INFO 2026-06-08 09:54:06 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr17:7,225,001 INFO 2026-06-08 09:54:06 MarkDuplicates Tracking 259958 as yet unmatched pairs. 100387 records in RAM. INFO 2026-06-08 09:54:08 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,259 INFO 2026-06-08 09:54:08 MarkDuplicates Tracking 259722 as yet unmatched pairs. 100149 records in RAM. INFO 2026-06-08 09:54:10 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr17:7,900,636 INFO 2026-06-08 09:54:10 MarkDuplicates Tracking 256719 as yet unmatched pairs. 97146 records in RAM. INFO 2026-06-08 09:54:12 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:10,529,598 INFO 2026-06-08 09:54:12 MarkDuplicates Tracking 255069 as yet unmatched pairs. 95496 records in RAM. INFO 2026-06-08 09:54:14 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 2s. Last read position: chr17:17,193,581 INFO 2026-06-08 09:54:14 MarkDuplicates Tracking 253702 as yet unmatched pairs. 94128 records in RAM. INFO 2026-06-08 09:54:17 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr17:18,607,962 INFO 2026-06-08 09:54:17 MarkDuplicates Tracking 252092 as yet unmatched pairs. 92517 records in RAM. INFO 2026-06-08 09:54:19 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 2s. Last read position: chr17:28,611,190 INFO 2026-06-08 09:54:19 MarkDuplicates Tracking 250776 as yet unmatched pairs. 91201 records in RAM. INFO 2026-06-08 09:54:21 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:29,571,969 INFO 2026-06-08 09:54:21 MarkDuplicates Tracking 249580 as yet unmatched pairs. 90004 records in RAM. INFO 2026-06-08 09:54:24 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr17:32,365,329 INFO 2026-06-08 09:54:24 MarkDuplicates Tracking 248625 as yet unmatched pairs. 89047 records in RAM. INFO 2026-06-08 09:54:26 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:36,310,692 INFO 2026-06-08 09:54:26 MarkDuplicates Tracking 246763 as yet unmatched pairs. 87185 records in RAM. INFO 2026-06-08 09:54:28 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr17:38,722,711 INFO 2026-06-08 09:54:28 MarkDuplicates Tracking 245894 as yet unmatched pairs. 86315 records in RAM. INFO 2026-06-08 09:54:30 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,245 INFO 2026-06-08 09:54:30 MarkDuplicates Tracking 244860 as yet unmatched pairs. 85279 records in RAM. INFO 2026-06-08 09:54:32 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:40,084,723 INFO 2026-06-08 09:54:32 MarkDuplicates Tracking 242729 as yet unmatched pairs. 83143 records in RAM. INFO 2026-06-08 09:54:34 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:41,527,952 INFO 2026-06-08 09:54:34 MarkDuplicates Tracking 242359 as yet unmatched pairs. 82770 records in RAM. INFO 2026-06-08 09:54:37 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr17:42,329,575 INFO 2026-06-08 09:54:37 MarkDuplicates Tracking 240623 as yet unmatched pairs. 81024 records in RAM. INFO 2026-06-08 09:54:39 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr17:43,209,912 INFO 2026-06-08 09:54:39 MarkDuplicates Tracking 238068 as yet unmatched pairs. 78464 records in RAM. INFO 2026-06-08 09:54:41 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr17:45,222,117 INFO 2026-06-08 09:54:41 MarkDuplicates Tracking 236529 as yet unmatched pairs. 76923 records in RAM. INFO 2026-06-08 09:54:44 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr17:46,540,216 INFO 2026-06-08 09:54:44 MarkDuplicates Tracking 235277 as yet unmatched pairs. 75666 records in RAM. INFO 2026-06-08 09:54:45 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:48,059,349 INFO 2026-06-08 09:54:45 MarkDuplicates Tracking 234350 as yet unmatched pairs. 74737 records in RAM. INFO 2026-06-08 09:54:48 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,504 INFO 2026-06-08 09:54:48 MarkDuplicates Tracking 248064 as yet unmatched pairs. 88441 records in RAM. INFO 2026-06-08 09:54:50 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,324 INFO 2026-06-08 09:54:50 MarkDuplicates Tracking 244920 as yet unmatched pairs. 85296 records in RAM. INFO 2026-06-08 09:54:52 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,843 INFO 2026-06-08 09:54:52 MarkDuplicates Tracking 240380 as yet unmatched pairs. 80754 records in RAM. INFO 2026-06-08 09:54:55 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,080 INFO 2026-06-08 09:54:55 MarkDuplicates Tracking 277899 as yet unmatched pairs. 118269 records in RAM. INFO 2026-06-08 09:54:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,927 INFO 2026-06-08 09:54:57 MarkDuplicates Tracking 257729 as yet unmatched pairs. 98099 records in RAM. INFO 2026-06-08 09:54:59 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,539 INFO 2026-06-08 09:54:59 MarkDuplicates Tracking 249047 as yet unmatched pairs. 89415 records in RAM. INFO 2026-06-08 09:55:02 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,773 INFO 2026-06-08 09:55:02 MarkDuplicates Tracking 272170 as yet unmatched pairs. 112533 records in RAM. INFO 2026-06-08 09:57:38 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 155s. Last read position: chr17:50,189,221 INFO 2026-06-08 09:57:38 MarkDuplicates Tracking 247492 as yet unmatched pairs. 87854 records in RAM. INFO 2026-06-08 09:57:41 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,493 INFO 2026-06-08 09:57:41 MarkDuplicates Tracking 254932 as yet unmatched pairs. 95292 records in RAM. INFO 2026-06-08 09:57:43 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,874 INFO 2026-06-08 09:57:43 MarkDuplicates Tracking 261885 as yet unmatched pairs. 102233 records in RAM. INFO 2026-06-08 09:57:45 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,081 INFO 2026-06-08 09:57:45 MarkDuplicates Tracking 262764 as yet unmatched pairs. 103108 records in RAM. INFO 2026-06-08 09:57:47 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,824 INFO 2026-06-08 09:57:47 MarkDuplicates Tracking 229164 as yet unmatched pairs. 69507 records in RAM. INFO 2026-06-08 09:57:50 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,428 INFO 2026-06-08 09:57:50 MarkDuplicates Tracking 261690 as yet unmatched pairs. 102033 records in RAM. INFO 2026-06-08 09:57:52 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,981 INFO 2026-06-08 09:57:52 MarkDuplicates Tracking 256368 as yet unmatched pairs. 96710 records in RAM. INFO 2026-06-08 09:57:55 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,672 INFO 2026-06-08 09:57:55 MarkDuplicates Tracking 260420 as yet unmatched pairs. 100762 records in RAM. INFO 2026-06-08 09:57:57 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,024 INFO 2026-06-08 09:57:57 MarkDuplicates Tracking 260033 as yet unmatched pairs. 100373 records in RAM. INFO 2026-06-08 09:57:59 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,025 INFO 2026-06-08 09:57:59 MarkDuplicates Tracking 263587 as yet unmatched pairs. 103926 records in RAM. INFO 2026-06-08 09:58:02 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,396 INFO 2026-06-08 09:58:02 MarkDuplicates Tracking 249758 as yet unmatched pairs. 90097 records in RAM. INFO 2026-06-08 09:58:04 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,737 INFO 2026-06-08 09:58:04 MarkDuplicates Tracking 238124 as yet unmatched pairs. 78463 records in RAM. INFO 2026-06-08 09:58:07 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 3s. Last read position: chr17:50,195,231 INFO 2026-06-08 09:58:07 MarkDuplicates Tracking 237195 as yet unmatched pairs. 77531 records in RAM. INFO 2026-06-08 09:58:09 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,572 INFO 2026-06-08 09:58:09 MarkDuplicates Tracking 232269 as yet unmatched pairs. 72602 records in RAM. INFO 2026-06-08 09:58:11 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,965 INFO 2026-06-08 09:58:11 MarkDuplicates Tracking 240298 as yet unmatched pairs. 80631 records in RAM. INFO 2026-06-08 09:58:14 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,322 INFO 2026-06-08 09:58:14 MarkDuplicates Tracking 254804 as yet unmatched pairs. 95137 records in RAM. INFO 2026-06-08 09:58:16 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,640 INFO 2026-06-08 09:58:16 MarkDuplicates Tracking 229939 as yet unmatched pairs. 70271 records in RAM. INFO 2026-06-08 09:58:18 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,182 INFO 2026-06-08 09:58:18 MarkDuplicates Tracking 245669 as yet unmatched pairs. 86001 records in RAM. INFO 2026-06-08 09:58:20 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,964 INFO 2026-06-08 09:58:20 MarkDuplicates Tracking 220746 as yet unmatched pairs. 61078 records in RAM. INFO 2026-06-08 09:58:23 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,494 INFO 2026-06-08 09:58:23 MarkDuplicates Tracking 219119 as yet unmatched pairs. 59449 records in RAM. INFO 2026-06-08 09:58:26 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,429 INFO 2026-06-08 09:58:26 MarkDuplicates Tracking 200949 as yet unmatched pairs. 41277 records in RAM. INFO 2026-06-08 09:58:28 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,901 INFO 2026-06-08 09:58:28 MarkDuplicates Tracking 198253 as yet unmatched pairs. 38581 records in RAM. INFO 2026-06-08 09:58:30 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 2s. Last read position: chr17:51,120,525 INFO 2026-06-08 09:58:30 MarkDuplicates Tracking 183553 as yet unmatched pairs. 23881 records in RAM. INFO 2026-06-08 09:58:32 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chr17:59,607,112 INFO 2026-06-08 09:58:32 MarkDuplicates Tracking 181926 as yet unmatched pairs. 22250 records in RAM. INFO 2026-06-08 09:58:34 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,635 INFO 2026-06-08 09:58:34 MarkDuplicates Tracking 182977 as yet unmatched pairs. 23301 records in RAM. INFO 2026-06-08 09:58:36 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 2s. Last read position: chr17:62,690,164 INFO 2026-06-08 09:58:36 MarkDuplicates Tracking 179310 as yet unmatched pairs. 19632 records in RAM. INFO 2026-06-08 09:58:38 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 1s. Last read position: chr17:64,500,043 INFO 2026-06-08 09:58:38 MarkDuplicates Tracking 178626 as yet unmatched pairs. 18942 records in RAM. INFO 2026-06-08 09:58:41 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 2s. Last read position: chr17:67,893,400 INFO 2026-06-08 09:58:41 MarkDuplicates Tracking 176246 as yet unmatched pairs. 16560 records in RAM. INFO 2026-06-08 09:58:43 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr17:69,008,199 INFO 2026-06-08 09:58:43 MarkDuplicates Tracking 174919 as yet unmatched pairs. 15227 records in RAM. INFO 2026-06-08 09:58:45 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr17:75,237,559 INFO 2026-06-08 09:58:45 MarkDuplicates Tracking 173418 as yet unmatched pairs. 13723 records in RAM. INFO 2026-06-08 09:58:47 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 1s. Last read position: chr17:75,758,533 INFO 2026-06-08 09:58:47 MarkDuplicates Tracking 171429 as yet unmatched pairs. 11731 records in RAM. INFO 2026-06-08 09:58:50 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr17:76,710,609 INFO 2026-06-08 09:58:50 MarkDuplicates Tracking 169733 as yet unmatched pairs. 10034 records in RAM. INFO 2026-06-08 09:58:52 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 1s. Last read position: chr17:78,827,189 INFO 2026-06-08 09:58:52 MarkDuplicates Tracking 168237 as yet unmatched pairs. 8531 records in RAM. INFO 2026-06-08 09:58:54 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 2s. Last read position: chr17:80,289,669 INFO 2026-06-08 09:58:54 MarkDuplicates Tracking 166508 as yet unmatched pairs. 6797 records in RAM. INFO 2026-06-08 09:58:56 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,246,280 INFO 2026-06-08 09:58:56 MarkDuplicates Tracking 164950 as yet unmatched pairs. 5237 records in RAM. INFO 2026-06-08 09:58:58 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr17:81,859,222 INFO 2026-06-08 09:58:58 MarkDuplicates Tracking 163729 as yet unmatched pairs. 4014 records in RAM. INFO 2026-06-08 09:59:00 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 2s. Last read position: chr17:82,088,454 INFO 2026-06-08 09:59:00 MarkDuplicates Tracking 161749 as yet unmatched pairs. 2033 records in RAM. INFO 2026-06-08 09:59:03 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 2s. Last read position: chr18:480,738 INFO 2026-06-08 09:59:03 MarkDuplicates Tracking 159682 as yet unmatched pairs. 9421 records in RAM. INFO 2026-06-08 09:59:05 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 1s. Last read position: chr18:10,487,981 INFO 2026-06-08 09:59:05 MarkDuplicates Tracking 158261 as yet unmatched pairs. 7992 records in RAM. INFO 2026-06-08 09:59:07 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 2s. Last read position: chr18:23,022,176 INFO 2026-06-08 09:59:07 MarkDuplicates Tracking 156993 as yet unmatched pairs. 6719 records in RAM. INFO 2026-06-08 09:59:09 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 1s. Last read position: chr18:36,109,697 INFO 2026-06-08 09:59:09 MarkDuplicates Tracking 157886 as yet unmatched pairs. 7598 records in RAM. INFO 2026-06-08 09:59:11 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 2s. Last read position: chr18:47,896,563 INFO 2026-06-08 09:59:11 MarkDuplicates Tracking 154400 as yet unmatched pairs. 4110 records in RAM. INFO 2026-06-08 09:59:13 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 1s. Last read position: chr18:58,335,492 INFO 2026-06-08 09:59:13 MarkDuplicates Tracking 152829 as yet unmatched pairs. 2534 records in RAM. INFO 2026-06-08 09:59:15 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chr18:74,633,198 INFO 2026-06-08 09:59:15 MarkDuplicates Tracking 151377 as yet unmatched pairs. 1072 records in RAM. INFO 2026-06-08 09:59:18 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 3s. Last read position: chr19:808,607 INFO 2026-06-08 09:59:18 MarkDuplicates Tracking 149720 as yet unmatched pairs. 62393 records in RAM. INFO 2026-06-08 09:59:21 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chr19:1,250,276 INFO 2026-06-08 09:59:21 MarkDuplicates Tracking 147625 as yet unmatched pairs. 60291 records in RAM. INFO 2026-06-08 09:59:23 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,303 INFO 2026-06-08 09:59:23 MarkDuplicates Tracking 146612 as yet unmatched pairs. 59278 records in RAM. INFO 2026-06-08 09:59:25 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 2s. Last read position: chr19:3,192,473 INFO 2026-06-08 09:59:25 MarkDuplicates Tracking 143910 as yet unmatched pairs. 56574 records in RAM. INFO 2026-06-08 09:59:27 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 1s. Last read position: chr19:4,496,346 INFO 2026-06-08 09:59:27 MarkDuplicates Tracking 141949 as yet unmatched pairs. 54611 records in RAM. INFO 2026-06-08 09:59:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 2s. Last read position: chr19:5,654,134 INFO 2026-06-08 09:59:29 MarkDuplicates Tracking 140223 as yet unmatched pairs. 52884 records in RAM. INFO 2026-06-08 09:59:32 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 2s. Last read position: chr19:6,694,546 INFO 2026-06-08 09:59:32 MarkDuplicates Tracking 139508 as yet unmatched pairs. 52169 records in RAM. INFO 2026-06-08 09:59:34 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 2s. Last read position: chr19:7,541,383 INFO 2026-06-08 09:59:34 MarkDuplicates Tracking 137008 as yet unmatched pairs. 49669 records in RAM. INFO 2026-06-08 09:59:36 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 1s. Last read position: chr19:8,596,362 INFO 2026-06-08 09:59:36 MarkDuplicates Tracking 135265 as yet unmatched pairs. 47922 records in RAM. INFO 2026-06-08 09:59:39 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 2s. Last read position: chr19:10,118,698 INFO 2026-06-08 09:59:39 MarkDuplicates Tracking 134319 as yet unmatched pairs. 46976 records in RAM. INFO 2026-06-08 09:59:40 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 1s. Last read position: chr19:10,922,705 INFO 2026-06-08 09:59:40 MarkDuplicates Tracking 132271 as yet unmatched pairs. 44926 records in RAM. INFO 2026-06-08 09:59:43 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 2s. Last read position: chr19:12,465,016 INFO 2026-06-08 09:59:43 MarkDuplicates Tracking 130881 as yet unmatched pairs. 43535 records in RAM. INFO 2026-06-08 09:59:45 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 1s. Last read position: chr19:13,073,937 INFO 2026-06-08 09:59:45 MarkDuplicates Tracking 129375 as yet unmatched pairs. 42028 records in RAM. INFO 2026-06-08 09:59:47 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 2s. Last read position: chr19:14,470,267 INFO 2026-06-08 09:59:47 MarkDuplicates Tracking 127359 as yet unmatched pairs. 40012 records in RAM. INFO 2026-06-08 09:59:49 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 1s. Last read position: chr19:15,249,241 INFO 2026-06-08 09:59:49 MarkDuplicates Tracking 126922 as yet unmatched pairs. 39572 records in RAM. INFO 2026-06-08 09:59:51 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 2s. Last read position: chr19:16,577,212 INFO 2026-06-08 09:59:51 MarkDuplicates Tracking 123800 as yet unmatched pairs. 36446 records in RAM. INFO 2026-06-08 09:59:53 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 2s. Last read position: chr19:17,862,952 INFO 2026-06-08 09:59:53 MarkDuplicates Tracking 123317 as yet unmatched pairs. 35961 records in RAM. INFO 2026-06-08 09:59:56 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 2s. Last read position: chr19:18,777,337 INFO 2026-06-08 09:59:56 MarkDuplicates Tracking 120356 as yet unmatched pairs. 33000 records in RAM. INFO 2026-06-08 09:59:58 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 1s. Last read position: chr19:23,360,292 INFO 2026-06-08 09:59:58 MarkDuplicates Tracking 118842 as yet unmatched pairs. 31479 records in RAM. INFO 2026-06-08 10:00:00 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chr19:35,119,387 INFO 2026-06-08 10:00:00 MarkDuplicates Tracking 117935 as yet unmatched pairs. 30572 records in RAM. INFO 2026-06-08 10:00:02 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 1s. Last read position: chr19:36,032,282 INFO 2026-06-08 10:00:02 MarkDuplicates Tracking 114994 as yet unmatched pairs. 27631 records in RAM. INFO 2026-06-08 10:00:04 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 2s. Last read position: chr19:38,724,012 INFO 2026-06-08 10:00:04 MarkDuplicates Tracking 113617 as yet unmatched pairs. 26251 records in RAM. INFO 2026-06-08 10:00:07 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 3s. Last read position: chr19:39,435,640 INFO 2026-06-08 10:00:07 MarkDuplicates Tracking 112561 as yet unmatched pairs. 25184 records in RAM. INFO 2026-06-08 10:00:09 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:24:17s. Time for last 1,000,000: 1s. Last read position: chr19:40,611,154 INFO 2026-06-08 10:00:09 MarkDuplicates Tracking 110477 as yet unmatched pairs. 23100 records in RAM. INFO 2026-06-08 10:00:11 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:24:20s. Time for last 1,000,000: 2s. Last read position: chr19:41,378,114 INFO 2026-06-08 10:00:11 MarkDuplicates Tracking 108802 as yet unmatched pairs. 21423 records in RAM. INFO 2026-06-08 10:00:13 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 1s. Last read position: chr19:42,286,856 INFO 2026-06-08 10:00:13 MarkDuplicates Tracking 108563 as yet unmatched pairs. 21183 records in RAM. INFO 2026-06-08 10:00:15 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 2s. Last read position: chr19:43,914,688 INFO 2026-06-08 10:00:15 MarkDuplicates Tracking 105496 as yet unmatched pairs. 18098 records in RAM. INFO 2026-06-08 10:00:17 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 1s. Last read position: chr19:45,142,202 INFO 2026-06-08 10:00:17 MarkDuplicates Tracking 103582 as yet unmatched pairs. 16184 records in RAM. INFO 2026-06-08 10:00:20 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 2s. Last read position: chr19:45,953,794 INFO 2026-06-08 10:00:20 MarkDuplicates Tracking 101736 as yet unmatched pairs. 14337 records in RAM. INFO 2026-06-08 10:00:21 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:24:30s. Time for last 1,000,000: 1s. Last read position: chr19:47,716,805 INFO 2026-06-08 10:00:21 MarkDuplicates Tracking 100368 as yet unmatched pairs. 12965 records in RAM. INFO 2026-06-08 10:00:25 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:24:33s. Time for last 1,000,000: 3s. Last read position: chr19:48,965,513 INFO 2026-06-08 10:00:25 MarkDuplicates Tracking 98783 as yet unmatched pairs. 11380 records in RAM. INFO 2026-06-08 10:00:26 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,556,577 INFO 2026-06-08 10:00:26 MarkDuplicates Tracking 96940 as yet unmatched pairs. 9535 records in RAM. INFO 2026-06-08 10:00:29 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 2s. Last read position: chr19:49,916,614 INFO 2026-06-08 10:00:29 MarkDuplicates Tracking 94978 as yet unmatched pairs. 7571 records in RAM. INFO 2026-06-08 10:00:30 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 1s. Last read position: chr19:52,841,078 INFO 2026-06-08 10:00:30 MarkDuplicates Tracking 93488 as yet unmatched pairs. 6080 records in RAM. INFO 2026-06-08 10:00:33 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chr19:54,458,312 INFO 2026-06-08 10:00:33 MarkDuplicates Tracking 92185 as yet unmatched pairs. 4777 records in RAM. INFO 2026-06-08 10:00:34 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 1s. Last read position: chr19:55,621,756 INFO 2026-06-08 10:00:34 MarkDuplicates Tracking 90169 as yet unmatched pairs. 2757 records in RAM. INFO 2026-06-08 10:00:37 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 2s. Last read position: chr19:57,856,104 INFO 2026-06-08 10:00:37 MarkDuplicates Tracking 89172 as yet unmatched pairs. 1760 records in RAM. INFO 2026-06-08 10:00:39 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:24:47s. Time for last 1,000,000: 2s. Last read position: chr20:417,746 INFO 2026-06-08 10:00:39 MarkDuplicates Tracking 87341 as yet unmatched pairs. 19700 records in RAM. INFO 2026-06-08 10:00:42 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 3s. Last read position: chr20:3,669,333 INFO 2026-06-08 10:00:42 MarkDuplicates Tracking 85999 as yet unmatched pairs. 18357 records in RAM. INFO 2026-06-08 10:00:44 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 1s. Last read position: chr20:17,619,691 INFO 2026-06-08 10:00:44 MarkDuplicates Tracking 84297 as yet unmatched pairs. 16655 records in RAM. INFO 2026-06-08 10:00:46 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chr20:23,637,689 INFO 2026-06-08 10:00:46 MarkDuplicates Tracking 83919 as yet unmatched pairs. 16276 records in RAM. INFO 2026-06-08 10:00:48 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 1s. Last read position: chr20:33,669,385 INFO 2026-06-08 10:00:48 MarkDuplicates Tracking 81365 as yet unmatched pairs. 13712 records in RAM. INFO 2026-06-08 10:00:50 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:24:58s. Time for last 1,000,000: 2s. Last read position: chr20:35,704,424 INFO 2026-06-08 10:00:50 MarkDuplicates Tracking 80156 as yet unmatched pairs. 12503 records in RAM. INFO 2026-06-08 10:00:52 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:25:00s. Time for last 1,000,000: 1s. Last read position: chr20:38,554,057 INFO 2026-06-08 10:00:52 MarkDuplicates Tracking 78390 as yet unmatched pairs. 10733 records in RAM. INFO 2026-06-08 10:00:54 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:25:02s. Time for last 1,000,000: 2s. Last read position: chr20:44,724,749 INFO 2026-06-08 10:00:54 MarkDuplicates Tracking 77137 as yet unmatched pairs. 9476 records in RAM. INFO 2026-06-08 10:00:56 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:25:04s. Time for last 1,000,000: 1s. Last read position: chr20:46,725,419 INFO 2026-06-08 10:00:56 MarkDuplicates Tracking 75365 as yet unmatched pairs. 7703 records in RAM. INFO 2026-06-08 10:00:58 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:25:07s. Time for last 1,000,000: 2s. Last read position: chr20:49,548,006 INFO 2026-06-08 10:00:58 MarkDuplicates Tracking 73885 as yet unmatched pairs. 6223 records in RAM. INFO 2026-06-08 10:01:01 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:25:09s. Time for last 1,000,000: 2s. Last read position: chr20:57,652,478 INFO 2026-06-08 10:01:01 MarkDuplicates Tracking 72833 as yet unmatched pairs. 5171 records in RAM. INFO 2026-06-08 10:01:03 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:25:11s. Time for last 1,000,000: 2s. Last read position: chr20:62,310,901 INFO 2026-06-08 10:01:03 MarkDuplicates Tracking 70624 as yet unmatched pairs. 2961 records in RAM. INFO 2026-06-08 10:01:05 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:25:13s. Time for last 1,000,000: 1s. Last read position: chr20:63,570,685 INFO 2026-06-08 10:01:05 MarkDuplicates Tracking 68886 as yet unmatched pairs. 1222 records in RAM. INFO 2026-06-08 10:01:07 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:25:15s. Time for last 1,000,000: 2s. Last read position: chr21:8,214,653 INFO 2026-06-08 10:01:07 MarkDuplicates Tracking 67387 as yet unmatched pairs. 14860 records in RAM. INFO 2026-06-08 10:01:08 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:25:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,398,053 INFO 2026-06-08 10:01:08 MarkDuplicates Tracking 66472 as yet unmatched pairs. 13938 records in RAM. INFO 2026-06-08 10:01:10 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:25:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,648 INFO 2026-06-08 10:01:10 MarkDuplicates Tracking 65189 as yet unmatched pairs. 12653 records in RAM. INFO 2026-06-08 10:01:12 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:25:20s. Time for last 1,000,000: 2s. Last read position: chr21:31,120,399 INFO 2026-06-08 10:01:12 MarkDuplicates Tracking 64075 as yet unmatched pairs. 11539 records in RAM. INFO 2026-06-08 10:01:14 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 2s. Last read position: chr21:34,423,368 INFO 2026-06-08 10:01:14 MarkDuplicates Tracking 62467 as yet unmatched pairs. 9925 records in RAM. INFO 2026-06-08 10:01:17 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:25:25s. Time for last 1,000,000: 2s. Last read position: chr21:39,197,301 INFO 2026-06-08 10:01:17 MarkDuplicates Tracking 61352 as yet unmatched pairs. 8809 records in RAM. INFO 2026-06-08 10:01:19 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:25:27s. Time for last 1,000,000: 1s. Last read position: chr21:44,227,253 INFO 2026-06-08 10:01:19 MarkDuplicates Tracking 59589 as yet unmatched pairs. 7046 records in RAM. INFO 2026-06-08 10:01:21 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:25:29s. Time for last 1,000,000: 2s. Last read position: chr21:45,981,815 INFO 2026-06-08 10:01:21 MarkDuplicates Tracking 60251 as yet unmatched pairs. 7708 records in RAM. INFO 2026-06-08 10:01:23 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:25:31s. Time for last 1,000,000: 1s. Last read position: chr21:45,999,680 INFO 2026-06-08 10:01:23 MarkDuplicates Tracking 57602 as yet unmatched pairs. 5059 records in RAM. INFO 2026-06-08 10:01:25 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:25:33s. Time for last 1,000,000: 2s. Last read position: chr21:46,120,522 INFO 2026-06-08 10:01:25 MarkDuplicates Tracking 55789 as yet unmatched pairs. 3244 records in RAM. INFO 2026-06-08 10:01:27 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:25:35s. Time for last 1,000,000: 2s. Last read position: chr22:11,883,023 INFO 2026-06-08 10:01:27 MarkDuplicates Tracking 52545 as yet unmatched pairs. 24483 records in RAM. INFO 2026-06-08 10:01:30 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:25:38s. Time for last 1,000,000: 2s. Last read position: chr22:20,507,686 INFO 2026-06-08 10:01:30 MarkDuplicates Tracking 50948 as yet unmatched pairs. 22886 records in RAM. INFO 2026-06-08 10:01:32 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 2s. Last read position: chr22:23,285,098 INFO 2026-06-08 10:01:32 MarkDuplicates Tracking 49569 as yet unmatched pairs. 21507 records in RAM. INFO 2026-06-08 10:01:34 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:25:42s. Time for last 1,000,000: 2s. Last read position: chr22:25,349,959 INFO 2026-06-08 10:01:34 MarkDuplicates Tracking 47543 as yet unmatched pairs. 19481 records in RAM. INFO 2026-06-08 10:01:36 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 1s. Last read position: chr22:28,799,120 INFO 2026-06-08 10:01:36 MarkDuplicates Tracking 50628 as yet unmatched pairs. 22565 records in RAM. INFO 2026-06-08 10:01:38 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:25:47s. Time for last 1,000,000: 2s. Last read position: chr22:29,359,674 INFO 2026-06-08 10:01:38 MarkDuplicates Tracking 44656 as yet unmatched pairs. 16593 records in RAM. INFO 2026-06-08 10:01:40 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:25:48s. Time for last 1,000,000: 1s. Last read position: chr22:31,613,420 INFO 2026-06-08 10:01:40 MarkDuplicates Tracking 42932 as yet unmatched pairs. 14867 records in RAM. INFO 2026-06-08 10:01:42 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:25:51s. Time for last 1,000,000: 2s. Last read position: chr22:36,293,344 INFO 2026-06-08 10:01:42 MarkDuplicates Tracking 41681 as yet unmatched pairs. 13616 records in RAM. INFO 2026-06-08 10:01:45 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:25:53s. Time for last 1,000,000: 2s. Last read position: chr22:37,676,986 INFO 2026-06-08 10:01:45 MarkDuplicates Tracking 40336 as yet unmatched pairs. 12268 records in RAM. INFO 2026-06-08 10:01:47 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:25:55s. Time for last 1,000,000: 2s. Last read position: chr22:38,506,109 INFO 2026-06-08 10:01:47 MarkDuplicates Tracking 38456 as yet unmatched pairs. 10388 records in RAM. INFO 2026-06-08 10:01:49 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 1s. Last read position: chr22:40,777,104 INFO 2026-06-08 10:01:49 MarkDuplicates Tracking 36382 as yet unmatched pairs. 8311 records in RAM. INFO 2026-06-08 10:01:51 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:26:00s. Time for last 1,000,000: 2s. Last read position: chr22:42,144,607 INFO 2026-06-08 10:01:51 MarkDuplicates Tracking 34896 as yet unmatched pairs. 6825 records in RAM. INFO 2026-06-08 10:01:53 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:26:01s. Time for last 1,000,000: 1s. Last read position: chr22:45,577,095 INFO 2026-06-08 10:01:53 MarkDuplicates Tracking 33543 as yet unmatched pairs. 5472 records in RAM. INFO 2026-06-08 10:01:55 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:26:04s. Time for last 1,000,000: 2s. Last read position: chr22:50,158,117 INFO 2026-06-08 10:01:55 MarkDuplicates Tracking 31248 as yet unmatched pairs. 3177 records in RAM. INFO 2026-06-08 10:01:57 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:26:05s. Time for last 1,000,000: 1s. Last read position: chr22:50,506,196 INFO 2026-06-08 10:01:57 MarkDuplicates Tracking 29743 as yet unmatched pairs. 1672 records in RAM. INFO 2026-06-08 10:02:00 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:26:08s. Time for last 1,000,000: 2s. Last read position: chrX:2,717,618 INFO 2026-06-08 10:02:00 MarkDuplicates Tracking 28209 as yet unmatched pairs. 21341 records in RAM. INFO 2026-06-08 10:02:02 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:26:10s. Time for last 1,000,000: 2s. Last read position: chrX:3,343,806 INFO 2026-06-08 10:02:02 MarkDuplicates Tracking 26675 as yet unmatched pairs. 19806 records in RAM. INFO 2026-06-08 10:02:05 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:26:13s. Time for last 1,000,000: 2s. Last read position: chrX:20,187,871 INFO 2026-06-08 10:02:05 MarkDuplicates Tracking 24950 as yet unmatched pairs. 18076 records in RAM. INFO 2026-06-08 10:02:07 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:26:15s. Time for last 1,000,000: 1s. Last read position: chrX:40,709,432 INFO 2026-06-08 10:02:07 MarkDuplicates Tracking 23620 as yet unmatched pairs. 16746 records in RAM. INFO 2026-06-08 10:02:09 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:26:17s. Time for last 1,000,000: 2s. Last read position: chrX:47,244,914 INFO 2026-06-08 10:02:09 MarkDuplicates Tracking 22202 as yet unmatched pairs. 15328 records in RAM. INFO 2026-06-08 10:02:11 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:26:19s. Time for last 1,000,000: 1s. Last read position: chrX:49,173,388 INFO 2026-06-08 10:02:11 MarkDuplicates Tracking 20838 as yet unmatched pairs. 13964 records in RAM. INFO 2026-06-08 10:02:13 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:26:21s. Time for last 1,000,000: 2s. Last read position: chrX:53,584,245 INFO 2026-06-08 10:02:13 MarkDuplicates Tracking 19233 as yet unmatched pairs. 12359 records in RAM. INFO 2026-06-08 10:02:15 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:26:24s. Time for last 1,000,000: 2s. Last read position: chrX:68,722,634 INFO 2026-06-08 10:02:15 MarkDuplicates Tracking 17653 as yet unmatched pairs. 10778 records in RAM. INFO 2026-06-08 10:02:18 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:26:26s. Time for last 1,000,000: 2s. Last read position: chrX:72,273,253 INFO 2026-06-08 10:02:18 MarkDuplicates Tracking 17893 as yet unmatched pairs. 11018 records in RAM. INFO 2026-06-08 10:02:20 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:26:28s. Time for last 1,000,000: 2s. Last read position: chrX:81,297,304 INFO 2026-06-08 10:02:20 MarkDuplicates Tracking 14920 as yet unmatched pairs. 8045 records in RAM. INFO 2026-06-08 10:02:22 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:26:30s. Time for last 1,000,000: 1s. Last read position: chrX:107,840,663 INFO 2026-06-08 10:02:22 MarkDuplicates Tracking 13553 as yet unmatched pairs. 6678 records in RAM. INFO 2026-06-08 10:02:24 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:26:32s. Time for last 1,000,000: 2s. Last read position: chrX:123,900,663 INFO 2026-06-08 10:02:24 MarkDuplicates Tracking 12461 as yet unmatched pairs. 5586 records in RAM. INFO 2026-06-08 10:02:26 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:26:34s. Time for last 1,000,000: 1s. Last read position: chrX:149,503,345 INFO 2026-06-08 10:02:26 MarkDuplicates Tracking 11161 as yet unmatched pairs. 4284 records in RAM. INFO 2026-06-08 10:02:28 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:26:36s. Time for last 1,000,000: 2s. Last read position: chrX:154,016,520 INFO 2026-06-08 10:02:28 MarkDuplicates Tracking 9628 as yet unmatched pairs. 2751 records in RAM. INFO 2026-06-08 10:02:30 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:26:38s. Time for last 1,000,000: 1s. Last read position: chrX:154,419,549 INFO 2026-06-08 10:02:30 MarkDuplicates Tracking 7838 as yet unmatched pairs. 961 records in RAM. INFO 2026-06-08 10:02:32 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:26:40s. Time for last 1,000,000: 2s. Last read position: GL000220.1:114,121 INFO 2026-06-08 10:02:32 MarkDuplicates Tracking 6674 as yet unmatched pairs. 2215 records in RAM. INFO 2026-06-08 10:02:34 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:26:42s. Time for last 1,000,000: 2s. Last read position: GL000220.1:160,236 INFO 2026-06-08 10:02:34 MarkDuplicates Tracking 4466 as yet unmatched pairs. 7 records in RAM. INFO 2026-06-08 10:02:35 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:26:44s. Time for last 1,000,000: 1s. Last read position: KI270733.1:134,986 INFO 2026-06-08 10:02:35 MarkDuplicates Tracking 288 as yet unmatched pairs. 273 records in RAM. INFO 2026-06-08 10:02:36 MarkDuplicates Read 633701190 records. 0 pairs never matched. INFO 2026-06-08 10:03:29 MarkDuplicates After buildSortedReadEndLists freeMemory: 58465080640; totalMemory: 83449872384; maxMemory: 127137742848 INFO 2026-06-08 10:03:29 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk. INFO 2026-06-08 10:03:35 MarkDuplicates Traversing read pair information and detecting duplicates. INFO 2026-06-08 10:04:05 OpticalDuplicateFinder Large duplicate set. size = 2433 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,361 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,721 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder Large duplicate set. size = 1206 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,457 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,019 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder Large duplicate set. size = 1112 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,946 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,338 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 10:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,097 INFO 2026-06-08 10:04:06 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-08 10:04:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,655 INFO 2026-06-08 10:04:07 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 10:04:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,615 INFO 2026-06-08 10:04:07 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 10:04:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,057 INFO 2026-06-08 10:04:07 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-08 10:04:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,815 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,642 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,504 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,975 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 1585 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,941 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 2019 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,504 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,852 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 2544 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,079 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,969 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,233 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 10:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,365 INFO 2026-06-08 10:04:15 OpticalDuplicateFinder Large duplicate set. size = 1570 INFO 2026-06-08 10:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,417 INFO 2026-06-08 10:04:19 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 10:04:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,051 INFO 2026-06-08 10:04:28 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 10:04:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,925 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 1356 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,130 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 2084 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,368 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,429 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 1959 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,167 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 1104 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,536 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 1389 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,208 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 2339 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,508 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,356 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-08 10:04:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,690 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,032 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,027 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,396 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,765 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,043 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,979 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1611 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,490 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1230 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,925 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 2379 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,787 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,016 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,376 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,886 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder Large duplicate set. size = 1082 INFO 2026-06-08 10:04:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,904 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 2536 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,670 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,354 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,936 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,974 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,199 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1279 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,473 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,921 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1218 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,844 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1535 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,304 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1788 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,105 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1284 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,583 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,097 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1274 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,140 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1130 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,374 INFO 2026-06-08 10:04:48 OpticalDuplicateFinder Large duplicate set. size = 1291 INFO 2026-06-08 10:04:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,230 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,493 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1432 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,399 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1594 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,003 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1465 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,308 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,212 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1500 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,893 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,575 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1747 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,661 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,369 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,668 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1419 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,574 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,535 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1460 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,428 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1779 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,710 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 2286 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,443 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,929 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1170 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,946 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 2649 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,700 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,549 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,195 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,239 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1174 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,259 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,770 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,949 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder Large duplicate set. size = 1195 INFO 2026-06-08 10:04:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,297 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1199 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,761 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1341 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,494 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1673 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,314 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1314 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,091 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,339 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,827 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1837 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,998 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1194 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,469 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1109 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,819 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1263 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,671 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,624 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,690 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,455 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1792 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,594 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,955 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1749 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,370 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,429 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 1475 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,333 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder Large duplicate set. size = 2124 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,832 INFO 2026-06-08 10:04:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,010 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1708 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,241 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1714 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,573 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,934 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,252 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 2080 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,840 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,072 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,728 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,530 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,911 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,323 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1702 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,108 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1593 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,867 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1777 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,778 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,696 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1176 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,786 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1109 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,375 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,612 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1597 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,995 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,537 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1093 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,422 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,257 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1877 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,359 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,476 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1632 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,380 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,178 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1220 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,839 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,110 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder Large duplicate set. size = 1268 INFO 2026-06-08 10:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,436 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1188 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,167 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1175 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,941 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1423 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,267 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,645 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1306 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,091 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1269 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,777 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,611 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1871 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,177 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 2380 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,414 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,882 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1756 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,171 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 2429 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,580 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,410 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1174 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,896 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1421 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,196 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 2157 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,327 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,053 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1081 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,653 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1371 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,097 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1324 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,113 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1341 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,084 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,651 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1529 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,849 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1904 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,323 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 2031 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,716 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,738 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1595 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,488 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1415 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,818 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1479 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,513 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1406 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,477 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1356 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,417 INFO 2026-06-08 10:05:12 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 10:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,208 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,235 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,869 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,667 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,330 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1573 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,501 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,378 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 2192 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,373 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,760 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1144 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,467 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 2475 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,846 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,029 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1246 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,361 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,166 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,728 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1099 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,335 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,071 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1111 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,152 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,882 INFO 2026-06-08 10:05:13 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,721 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1305 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,010 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2263 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,039 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,071 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1510 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,312 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1441 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,441 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1237 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,572 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1706 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,009 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2448 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,112 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,598 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,309 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,779 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2567 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,441 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,021 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1855 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,443 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2525 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,011 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,836 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1719 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,553 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1607 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,572 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,938 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,527 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,518 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 3333 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,736 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,892 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,226 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 4682 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,783 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,832 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,244 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,395 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1274 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,799 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1314 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,000 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2498 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,289 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,909 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,790 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 3388 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,901 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,441 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,410 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,694 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2595 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,289 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 2325 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,957 INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,728 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,111 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1083 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,328 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1134 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,432 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1446 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,575 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1174 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,601 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,409 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1768 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,759 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1464 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,518 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,632 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1145 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,864 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1713 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,959 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,039 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1941 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,932 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1237 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,463 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,090 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1241 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,482 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1446 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,944 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 3228 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,340 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,287 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1492 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,388 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1465 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,658 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 2247 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,060 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,306 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1944 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,907 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 2168 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,624 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,788 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1249 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,089 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,336 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1780 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,607 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 2465 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,283 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,945 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1370 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,697 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1162 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,385 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,032 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,809 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1428 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,473 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,763 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,023 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 2291 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,456 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,154 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1711 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,471 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1174 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,370 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1314 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,936 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1200 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,269 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,047 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,231 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1511 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,454 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 2073 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,219 INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,452 INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 10:05:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,114 INFO 2026-06-08 10:05:27 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 10:05:28 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 10:07:07 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 10:07:11 MarkDuplicates After generateDuplicateIndexes freeMemory: 203848080; totalMemory: 234881024; maxMemory: 127137742848 INFO 2026-06-08 10:07:11 MarkDuplicates Marking 335032582 records as duplicates. INFO 2026-06-08 10:07:11 MarkDuplicates Found 16606224 optical duplicate clusters. INFO 2026-06-08 10:07:12 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 10:07:30 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:24,453,436 INFO 2026-06-08 10:07:47 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:51,818,076 INFO 2026-06-08 10:08:05 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 17s. Last read position: chr1:117,368,262 INFO 2026-06-08 10:08:22 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:10s. Time for last 10,000,000: 17s. Last read position: chr1:151,411,702 INFO 2026-06-08 10:08:39 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 16s. Last read position: chr1:161,102,161 INFO 2026-06-08 10:08:56 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 17s. Last read position: chr1:206,728,703 INFO 2026-06-08 10:09:13 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:20,447,524 INFO 2026-06-08 10:09:31 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 17s. Last read position: chr2:61,188,523 INFO 2026-06-08 10:09:49 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 17s. Last read position: chr2:127,059,093 INFO 2026-06-08 10:10:06 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:54s. Time for last 10,000,000: 17s. Last read position: chr2:189,056,977 INFO 2026-06-08 10:10:24 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:12s. Time for last 10,000,000: 17s. Last read position: chr2:215,386,766 INFO 2026-06-08 10:10:41 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:29s. Time for last 10,000,000: 17s. Last read position: chr2:227,533,598 INFO 2026-06-08 10:10:59 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 17s. Last read position: chr3:32,391,901 INFO 2026-06-08 10:11:17 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 18s. Last read position: chr3:58,526,513 INFO 2026-06-08 10:11:35 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 18s. Last read position: chr3:160,412,306 INFO 2026-06-08 10:11:53 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:41s. Time for last 10,000,000: 18s. Last read position: chr4:48,499,495 INFO 2026-06-08 10:12:11 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:59s. Time for last 10,000,000: 17s. Last read position: chr4:157,363,426 INFO 2026-06-08 10:12:29 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 17s. Last read position: chr5:76,241,941 INFO 2026-06-08 10:12:47 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 17s. Last read position: chr5:141,375,368 INFO 2026-06-08 10:13:04 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 17s. Last read position: chr5:176,969,169 INFO 2026-06-08 10:13:22 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 17s. Last read position: chr6:31,816,627 INFO 2026-06-08 10:13:40 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 17s. Last read position: chr6:47,606,236 INFO 2026-06-08 10:13:57 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 17s. Last read position: chr6:151,808,141 INFO 2026-06-08 10:14:15 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 17s. Last read position: chr7:42,045,415 INFO 2026-06-08 10:14:32 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 17s. Last read position: chr7:94,420,575 INFO 2026-06-08 10:14:50 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:38s. Time for last 10,000,000: 17s. Last read position: chr7:140,808,862 INFO 2026-06-08 10:15:07 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 17s. Last read position: chr8:43,059,144 INFO 2026-06-08 10:15:25 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:13s. Time for last 10,000,000: 17s. Last read position: chr8:143,867,738 INFO 2026-06-08 10:15:42 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 17s. Last read position: chr9:97,627,436 INFO 2026-06-08 10:16:00 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 17s. Last read position: chr9:134,820,184 INFO 2026-06-08 10:16:17 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 17s. Last read position: chr10:45,700,017 INFO 2026-06-08 10:16:34 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 17s. Last read position: chr10:110,118,637 INFO 2026-06-08 10:16:51 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 17s. Last read position: chr11:12,226,298 INFO 2026-06-08 10:17:09 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 17s. Last read position: chr11:62,533,482 INFO 2026-06-08 10:17:26 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:14s. Time for last 10,000,000: 17s. Last read position: chr11:77,685,155 INFO 2026-06-08 10:17:43 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 17s. Last read position: chr12:6,933,857 INFO 2026-06-08 10:18:00 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:48s. Time for last 10,000,000: 17s. Last read position: chr12:52,233,480 INFO 2026-06-08 10:18:17 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 17s. Last read position: chr12:91,108,865 INFO 2026-06-08 10:18:35 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 17s. Last read position: chr13:22,843,364 INFO 2026-06-08 10:18:52 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 17s. Last read position: chr14:23,049,712 INFO 2026-06-08 10:19:09 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 17s. Last read position: chr14:77,552,175 INFO 2026-06-08 10:19:26 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:14s. Time for last 10,000,000: 17s. Last read position: chr15:39,592,999 INFO 2026-06-08 10:19:44 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:32s. Time for last 10,000,000: 17s. Last read position: chr15:74,023,249 INFO 2026-06-08 10:20:01 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 17s. Last read position: chr16:3,408,659 INFO 2026-06-08 10:20:18 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:06s. Time for last 10,000,000: 17s. Last read position: chr16:28,342,875 INFO 2026-06-08 10:20:35 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:23s. Time for last 10,000,000: 17s. Last read position: chr16:67,247,333 INFO 2026-06-08 10:20:53 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:41s. Time for last 10,000,000: 17s. Last read position: chr17:4,946,780 INFO 2026-06-08 10:21:10 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 17s. Last read position: chr17:36,310,692 INFO 2026-06-08 10:21:27 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 17s. Last read position: chr17:50,185,504 INFO 2026-06-08 10:21:44 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 16s. Last read position: chr17:50,190,081 INFO 2026-06-08 10:22:01 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 17s. Last read position: chr17:50,195,572 INFO 2026-06-08 10:22:18 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:06s. Time for last 10,000,000: 16s. Last read position: chr17:59,607,112 INFO 2026-06-08 10:22:35 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:23s. Time for last 10,000,000: 17s. Last read position: chr17:80,289,669 INFO 2026-06-08 10:22:53 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 17s. Last read position: chr18:74,633,198 INFO 2026-06-08 10:23:10 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 17s. Last read position: chr19:10,118,698 INFO 2026-06-08 10:23:27 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 16s. Last read position: chr19:35,119,387 INFO 2026-06-08 10:23:44 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 16s. Last read position: chr19:47,716,805 INFO 2026-06-08 10:24:01 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 16s. Last read position: chr20:17,619,691 INFO 2026-06-08 10:24:18 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:06s. Time for last 10,000,000: 17s. Last read position: chr20:63,570,685 INFO 2026-06-08 10:24:34 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:22s. Time for last 10,000,000: 16s. Last read position: chr21:46,120,522 INFO 2026-06-08 10:24:51 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:39s. Time for last 10,000,000: 16s. Last read position: chr22:38,506,109 INFO 2026-06-08 10:25:08 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:56s. Time for last 10,000,000: 17s. Last read position: chrX:47,244,914 INFO 2026-06-08 10:25:25 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:13s. Time for last 10,000,000: 17s. Last read position: chrX:154,419,549 INFO 2026-06-08 10:25:41 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 10:25:41 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 10:25:41 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 10:25:41 MarkDuplicates Before output close freeMemory: 203820376; totalMemory: 234881024; maxMemory: 127137742848 INFO 2026-06-08 10:25:41 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 10:25:41 MarkDuplicates After output close freeMemory: 104055200; totalMemory: 134217728; maxMemory: 127137742848 [Mon Jun 08 10:25:41 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 49.88 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory