Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5e9ae93ab1d1f941b4127ed31c7649/aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/0ebae52b4bd3f8959a02cb155256bf/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/0ebae52b4bd3f8959a02cb155256bf/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3270ab-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-3270ab-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:35.706 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:35 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-3270ab-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3270ab-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-3270ab-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:35 GMT 2026] Executing as ?@nf-a00ebae52b4bd3f8959a02cb155256bf-07846-hs8gl on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:35 MarkDuplicates Start of doWork freeMemory: 105493528; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:35 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:35 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,310,906
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 2453 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,671,559
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 5526 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:5,880,157
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 7242 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,865,407
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 9528 as yet unmatched pairs. 333 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,237,879
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 11628 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:15,717,930
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 13821 as yet unmatched pairs. 672 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:16,987,149
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 15313 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,288,538
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 17408 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 3s. Last read position: chr1:21,823,233
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 19830 as yet unmatched pairs. 975 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:21,864,124
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 23020 as yet unmatched pairs. 1953 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:22,643,666
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 25763 as yet unmatched pairs. 2738 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:23,820,559
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 24960 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:26,573,234
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 27517 as yet unmatched pairs. 863 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:27,872,610
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 29451 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:31,586,964
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 30804 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:32,770,816
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 32808 as yet unmatched pairs. 375 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:35,832,150
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 34452 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:39,028,919
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 36813 as yet unmatched pairs. 611 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:40,059,440
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 38418 as yet unmatched pairs. 607 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:42,958,716
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 39752 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:44,776,063
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 44419 as yet unmatched pairs. 2783 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:46,394,344
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 43692 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:54,047,296
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 45863 as yet unmatched pairs. 599 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:64,805,076
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 47151 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:84,495,940
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 48680 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:92,075,142
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 50310 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:102,979,390
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 52936 as yet unmatched pairs. 1084 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:110,044,872
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 53858 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,659
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 56063 as yet unmatched pairs. 720 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:116,584,829
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 57114 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:120,069,339
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 59161 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:146,106,585
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 59709 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,077,263
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 60735 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:149,933,889
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 62174 as yet unmatched pairs. 678 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,796,841
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 64505 as yet unmatched pairs. 1197 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:152,216,477
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 65172 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,648
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 75049 as yet unmatched pairs. 8365 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:154,951,490
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 68908 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:155,326,679
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 70611 as yet unmatched pairs. 492 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:156,130,638
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 83745 as yet unmatched pairs. 11667 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,200,243
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 74749 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:158,847,804
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 76419 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:161,196,284
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 78902 as yet unmatched pairs. 918 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:167,553,424
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 80271 as yet unmatched pairs. 771 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,370
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 91138 as yet unmatched pairs. 9742 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:178,094,564
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 83841 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:183,136,384
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 85095 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:186,357,561
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 87117 as yet unmatched pairs. 696 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:201,484,699
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 90438 as yet unmatched pairs. 2420 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:203,707,939
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 90076 as yet unmatched pairs. 205 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:206,492,989
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 91720 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:207,331,224
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 94136 as yet unmatched pairs. 790 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:214,642,963
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 95194 as yet unmatched pairs. 79 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:225,519,198
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 96857 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:228,279,410
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 98688 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:234,608,992
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 103516 as yet unmatched pairs. 2625 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:244,858,814
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 104237 as yet unmatched pairs. 1638 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:6,840,557
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 104802 as yet unmatched pairs. 102225 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:15,617,273
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 107066 as yet unmatched pairs. 104434 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:24,821,295
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 108536 as yet unmatched pairs. 105850 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:27,205,488
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 110697 as yet unmatched pairs. 107980 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:28,869,798
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 112359 as yet unmatched pairs. 109611 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,258
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 179380 as yet unmatched pairs. 106827 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 609375 as yet unmatched pairs. 86166 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 940608 as yet unmatched pairs. 69829 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:33,134,873
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1010050 as yet unmatched pairs. 66826 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:42,261,163
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 1008215 as yet unmatched pairs. 64948 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:44,201,290
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1005955 as yet unmatched pairs. 62658 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:54,622,311
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1005766 as yet unmatched pairs. 62418 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:55,558,859
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 1002842 as yet unmatched pairs. 59468 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:65,246,699
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 1001638 as yet unmatched pairs. 58229 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:71,355,777
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 999790 as yet unmatched pairs. 56348 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:74,369,449
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 998023 as yet unmatched pairs. 54553 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:85,399,162
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 996498 as yet unmatched pairs. 52975 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,375
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 998544 as yet unmatched pairs. 54980 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:97,584,980
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 993407 as yet unmatched pairs. 49779 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:105,881,458
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 991742 as yet unmatched pairs. 48053 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:109,803,444
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 990290 as yet unmatched pairs. 46556 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:112,659,216
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 989880 as yet unmatched pairs. 46116 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:127,584,240
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 988085 as yet unmatched pairs. 44268 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:135,622,671
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 986304 as yet unmatched pairs. 42433 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:158,624,992
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 985287 as yet unmatched pairs. 41352 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:170,962,912
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 983625 as yet unmatched pairs. 39637 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:177,219,594
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 982622 as yet unmatched pairs. 38600 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:188,974,518
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 983858 as yet unmatched pairs. 39786 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:189,001,565
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 980902 as yet unmatched pairs. 36789 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:189,057,366
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 978426 as yet unmatched pairs. 34266 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:191,678,988
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 974687 as yet unmatched pairs. 30501 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:201,276,790
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 973363 as yet unmatched pairs. 29149 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:208,302,261
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 971698 as yet unmatched pairs. 27439 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,370,340
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 987717 as yet unmatched pairs. 43440 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,306
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 977840 as yet unmatched pairs. 33549 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,212
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 981287 as yet unmatched pairs. 36966 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,565
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 971669 as yet unmatched pairs. 27336 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:215,407,153
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 976109 as yet unmatched pairs. 31764 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:215,420,703
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 966930 as yet unmatched pairs. 22560 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,839
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 969839 as yet unmatched pairs. 25451 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:216,679,007
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 961020 as yet unmatched pairs. 16588 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:218,429,612
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 958307 as yet unmatched pairs. 13836 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:219,425,686
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 958954 as yet unmatched pairs. 14449 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:229,785,790
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 954405 as yet unmatched pairs. 9820 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,449
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 954866 as yet unmatched pairs. 10246 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,880
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 952936 as yet unmatched pairs. 8253 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:237,372,092
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 951346 as yet unmatched pairs. 6633 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:240,005,263
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 948008 as yet unmatched pairs. 3248 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:241,633,699
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 945576 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr3:9,902,884
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 943772 as yet unmatched pairs. 47446 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:13,570,339
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 942927 as yet unmatched pairs. 46561 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:23,532,579
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 940254 as yet unmatched pairs. 43780 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:36,856,186
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 938440 as yet unmatched pairs. 41909 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,070
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 941999 as yet unmatched pairs. 45434 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:45,709,584
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 935149 as yet unmatched pairs. 38548 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:47,417,551
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 933191 as yet unmatched pairs. 36546 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:48,469,164
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 931764 as yet unmatched pairs. 35074 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:49,015,387
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 929079 as yet unmatched pairs. 32367 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:49,419,225
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 927440 as yet unmatched pairs. 30701 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:50,271,447
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 925657 as yet unmatched pairs. 28891 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:52,290,448
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 923644 as yet unmatched pairs. 26843 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:53,231,388
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 922017 as yet unmatched pairs. 25186 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:58,163,190
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 921380 as yet unmatched pairs. 24495 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:75,214,539
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 918354 as yet unmatched pairs. 21397 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:100,775,326
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 916966 as yet unmatched pairs. 19966 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:114,070,664
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 915673 as yet unmatched pairs. 18618 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:122,701,568
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 914629 as yet unmatched pairs. 17536 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:126,989,430
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 912485 as yet unmatched pairs. 15349 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:129,315,256
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 910421 as yet unmatched pairs. 13252 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:138,097,805
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 908578 as yet unmatched pairs. 11345 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:150,603,386
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 907088 as yet unmatched pairs. 9805 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:170,260,041
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 905497 as yet unmatched pairs. 8149 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr3:183,844,257
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 904188 as yet unmatched pairs. 6759 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:184,572,954
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 902535 as yet unmatched pairs. 5069 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:188,866,221
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 903717 as yet unmatched pairs. 6200 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,419
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 900942 as yet unmatched pairs. 3392 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:197,009,692
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 898365 as yet unmatched pairs. 783 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:1,212,945
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 897494 as yet unmatched pairs. 27054 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:2,830,001
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 894778 as yet unmatched pairs. 24280 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:7,060,951
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 892465 as yet unmatched pairs. 21921 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:17,579,906
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 891432 as yet unmatched pairs. 20820 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:39,308,713
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 888988 as yet unmatched pairs. 18310 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:54,267,684
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 887921 as yet unmatched pairs. 17168 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:67,623,166
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 885556 as yet unmatched pairs. 14766 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:76,175,811
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 884063 as yet unmatched pairs. 13237 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:83,094,657
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 884092 as yet unmatched pairs. 13221 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:95,278,340
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 880752 as yet unmatched pairs. 9839 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:112,606,082
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 879200 as yet unmatched pairs. 8247 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:123,401,568
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 878010 as yet unmatched pairs. 7005 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr4:145,892,258
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 876316 as yet unmatched pairs. 5279 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:155,713,273
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 874896 as yet unmatched pairs. 3817 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr4:177,442,258
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 872958 as yet unmatched pairs. 1835 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:186,707,222
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 871970 as yet unmatched pairs. 828 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr5:6,754,838
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 869625 as yet unmatched pairs. 44638 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,986
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 869305 as yet unmatched pairs. 44276 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:32,274,056
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 866130 as yet unmatched pairs. 41048 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:41,803,068
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 864839 as yet unmatched pairs. 39717 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:62,530,743
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 863379 as yet unmatched pairs. 38220 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:72,196,822
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 862248 as yet unmatched pairs. 37062 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:79,237,539
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 860681 as yet unmatched pairs. 35457 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:87,372,124
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 859183 as yet unmatched pairs. 33934 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:108,381,075
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 857705 as yet unmatched pairs. 32416 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:128,110,157
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 856179 as yet unmatched pairs. 30856 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:134,142,998
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 854404 as yet unmatched pairs. 29034 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:138,166,609
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 852610 as yet unmatched pairs. 27194 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:139,476,443
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 851163 as yet unmatched pairs. 25717 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr5:141,413,369
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 849565 as yet unmatched pairs. 24014 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:146,124,034
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 848013 as yet unmatched pairs. 22421 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:150,120,964
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 850151 as yet unmatched pairs. 24531 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,197
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 877545 as yet unmatched pairs. 51907 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,123
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 879404 as yet unmatched pairs. 53741 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,403
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 841196 as yet unmatched pairs. 15514 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:154,755,918
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 839273 as yet unmatched pairs. 13558 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:168,700,622
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 837223 as yet unmatched pairs. 11472 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,899
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 837163 as yet unmatched pairs. 11395 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr5:176,577,338
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 833916 as yet unmatched pairs. 8099 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,491,785
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 832863 as yet unmatched pairs. 7009 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,706,272
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 831086 as yet unmatched pairs. 5193 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,089
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 832553 as yet unmatched pairs. 6635 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:181,243,792
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 825999 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr6:7,229,480
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 824757 as yet unmatched pairs. 52843 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr6:12,121,855
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 822355 as yet unmatched pairs. 50409 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:25,488,529
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 821226 as yet unmatched pairs. 49206 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:26,445,633
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 819154 as yet unmatched pairs. 47098 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:29,723,565
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 817899 as yet unmatched pairs. 45817 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:30,602,087
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 816787 as yet unmatched pairs. 44682 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,075
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 817828 as yet unmatched pairs. 45670 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr6:31,633,529
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 812374 as yet unmatched pairs. 40187 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,038
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 810519 as yet unmatched pairs. 38305 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,994,689
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 809913 as yet unmatched pairs. 37667 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,337
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 808798 as yet unmatched pairs. 36541 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:32,979,920
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 806478 as yet unmatched pairs. 34191 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:33,412,385
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 804669 as yet unmatched pairs. 32363 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:35,319,867
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 801965 as yet unmatched pairs. 29613 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:41,028,472
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 800336 as yet unmatched pairs. 27946 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:43,141,723
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 798424 as yet unmatched pairs. 26005 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:44,148,254
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 796400 as yet unmatched pairs. 23957 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:52,282,716
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 795259 as yet unmatched pairs. 22774 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:63,580,098
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 793530 as yet unmatched pairs. 20957 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:75,181,201
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 792838 as yet unmatched pairs. 20218 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:87,518,572
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 790353 as yet unmatched pairs. 17697 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,680
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 791403 as yet unmatched pairs. 18723 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:112,216,425
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 787489 as yet unmatched pairs. 14773 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:127,453,847
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 784837 as yet unmatched pairs. 12077 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:135,201,646
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 783649 as yet unmatched pairs. 10847 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:143,765,504
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 782028 as yet unmatched pairs. 9186 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:151,350,914
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 780563 as yet unmatched pairs. 7688 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:158,502,690
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 778528 as yet unmatched pairs. 5629 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:159,682,496
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 777181 as yet unmatched pairs. 4256 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:167,915,165
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 774989 as yet unmatched pairs. 2013 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr7:259,852
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 773421 as yet unmatched pairs. 54880 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr7:2,527,146
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 770685 as yet unmatched pairs. 52086 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr7:5,376,200
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 769131 as yet unmatched pairs. 50493 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,506
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 778102 as yet unmatched pairs. 59427 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:6,402,333
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 765114 as yet unmatched pairs. 46411 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:23,611,414
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 762805 as yet unmatched pairs. 44064 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:32,996,254
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 761410 as yet unmatched pairs. 42643 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,582
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 761847 as yet unmatched pairs. 43042 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:44,701,585
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 757737 as yet unmatched pairs. 38898 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:55,156,611
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 756111 as yet unmatched pairs. 37239 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr7:72,940,663
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 753965 as yet unmatched pairs. 35059 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,774
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 753114 as yet unmatched pairs. 34194 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:75,421,640
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 750945 as yet unmatched pairs. 31995 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:76,618,192
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 749241 as yet unmatched pairs. 30249 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:92,134,267
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 747801 as yet unmatched pairs. 28766 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:94,411,098
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 753173 as yet unmatched pairs. 34098 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:94,430,265
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 745997 as yet unmatched pairs. 26879 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:99,459,218
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 742958 as yet unmatched pairs. 23808 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,602,394
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 740896 as yet unmatched pairs. 21709 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,741
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 738976 as yet unmatched pairs. 19757 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,913
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 740806 as yet unmatched pairs. 21587 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,934
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 738419 as yet unmatched pairs. 19198 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr7:101,039,873
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 737902 as yet unmatched pairs. 18667 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:102,348,558
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 735904 as yet unmatched pairs. 16632 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:105,607,815
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 734110 as yet unmatched pairs. 14809 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:116,700,200
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 733257 as yet unmatched pairs. 13929 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,954
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 733524 as yet unmatched pairs. 14167 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:130,500,460
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 729557 as yet unmatched pairs. 10169 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:137,928,198
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 732071 as yet unmatched pairs. 12634 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:142,801,073
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 726654 as yet unmatched pairs. 7184 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:149,005,365
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 725862 as yet unmatched pairs. 6368 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr7:151,067,950
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 723249 as yet unmatched pairs. 3710 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:155,745,389
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 720924 as yet unmatched pairs. 1343 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,181
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 724433 as yet unmatched pairs. 53577 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:22,194,155
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 717157 as yet unmatched pairs. 46267 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:26,338,925
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 715055 as yet unmatched pairs. 44139 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,131
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 714255 as yet unmatched pairs. 43310 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr8:38,840,255
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 712787 as yet unmatched pairs. 41832 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,871
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 710523 as yet unmatched pairs. 39520 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 58s. Last read position: chr8:56,073,132
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 713263 as yet unmatched pairs. 42217 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:67,227,137
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 706638 as yet unmatched pairs. 35557 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:74,244,831
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 705152 as yet unmatched pairs. 34025 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:94,189,238
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 704623 as yet unmatched pairs. 33432 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,283
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 704453 as yet unmatched pairs. 33233 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:102,650,181
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 700692 as yet unmatched pairs. 29441 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:119,617,049
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 698852 as yet unmatched pairs. 27552 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,250
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 699464 as yet unmatched pairs. 28127 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:133,408,198
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 695263 as yet unmatched pairs. 23880 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,567,413
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 693543 as yet unmatched pairs. 22080 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,730,330
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 692044 as yet unmatched pairs. 20540 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,995
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 693198 as yet unmatched pairs. 21671 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,289
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 690202 as yet unmatched pairs. 18672 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,116
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 691855 as yet unmatched pairs. 20313 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,437
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 686771 as yet unmatched pairs. 15216 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,745
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 686296 as yet unmatched pairs. 14741 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,363
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 688785 as yet unmatched pairs. 17201 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,047
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 685213 as yet unmatched pairs. 13591 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr8:144,096,238
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 677855 as yet unmatched pairs. 6203 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,390,737
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 675353 as yet unmatched pairs. 3679 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,547,702
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 672689 as yet unmatched pairs. 995 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:5,832,969
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 670717 as yet unmatched pairs. 41879 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:20,978,341
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 669460 as yet unmatched pairs. 40528 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:34,637,047
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 668438 as yet unmatched pairs. 39475 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:35,704,086
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 667181 as yet unmatched pairs. 38181 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:38,395,901
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 664585 as yet unmatched pairs. 35536 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:73,162,818
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 662917 as yet unmatched pairs. 33805 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:86,353,142
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 660892 as yet unmatched pairs. 31727 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:93,317,495
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 659275 as yet unmatched pairs. 30075 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:98,944,161
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 659246 as yet unmatched pairs. 30013 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:107,487,817
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 656268 as yet unmatched pairs. 27020 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:114,167,761
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 653876 as yet unmatched pairs. 24604 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:116,698,039
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 651900 as yet unmatched pairs. 22609 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:123,179,032
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 650300 as yet unmatched pairs. 20979 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr9:127,527,296
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 648739 as yet unmatched pairs. 19376 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr9:128,420,875
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 646413 as yet unmatched pairs. 17031 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:129,009,821
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 644851 as yet unmatched pairs. 15436 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,169
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 643491 as yet unmatched pairs. 14032 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:133,050,921
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 640871 as yet unmatched pairs. 11371 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:134,750,870
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 642442 as yet unmatched pairs. 12916 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:136,050,174
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 637018 as yet unmatched pairs. 7472 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:136,672,283
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 634567 as yet unmatched pairs. 5000 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:137,108,426
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 632568 as yet unmatched pairs. 2974 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,813,361
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 629829 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:5,895,070
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 628270 as yet unmatched pairs. 32175 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:16,782,073
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 626767 as yet unmatched pairs. 30640 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr10:24,607,436
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 624853 as yet unmatched pairs. 28693 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,273
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 629436 as yet unmatched pairs. 33230 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:32,928,188
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 622361 as yet unmatched pairs. 26134 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr10:45,826,436
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 620832 as yet unmatched pairs. 24583 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:50,343,475
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 619242 as yet unmatched pairs. 22972 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:68,396,801
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 617721 as yet unmatched pairs. 21418 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:71,290,947
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 616278 as yet unmatched pairs. 19934 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:73,798,013
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 614142 as yet unmatched pairs. 17778 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,213
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 617091 as yet unmatched pairs. 20709 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:87,741,270
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 610903 as yet unmatched pairs. 14492 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:94,246,021
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 609499 as yet unmatched pairs. 13072 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:97,432,492
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 607957 as yet unmatched pairs. 11498 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:101,003,561
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 606218 as yet unmatched pairs. 9727 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:102,657,151
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 604676 as yet unmatched pairs. 8134 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:110,952,004
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 602192 as yet unmatched pairs. 5622 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:119,453,177
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 600671 as yet unmatched pairs. 4072 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:125,026,306
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 599298 as yet unmatched pairs. 2648 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:133,350,109
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 599235 as yet unmatched pairs. 2549 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:319,968
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 605521 as yet unmatched pairs. 74729 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr11:720,725
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 593716 as yet unmatched pairs. 62897 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr11:1,242,439
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 591196 as yet unmatched pairs. 60341 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,565,612
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 590235 as yet unmatched pairs. 59370 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr11:3,104,323
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 587865 as yet unmatched pairs. 56969 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:6,623,431
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 586036 as yet unmatched pairs. 55118 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:10,775,251
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 584025 as yet unmatched pairs. 53073 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:16,789,776
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 582728 as yet unmatched pairs. 51741 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:33,141,888
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 581026 as yet unmatched pairs. 49989 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:43,798,399
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 579862 as yet unmatched pairs. 48802 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:46,751,128
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 577275 as yet unmatched pairs. 46191 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:57,310,203
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 575715 as yet unmatched pairs. 44608 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:59,152,186
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 573980 as yet unmatched pairs. 42861 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:61,780,230
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 572041 as yet unmatched pairs. 40891 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,594
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 571863 as yet unmatched pairs. 40701 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:62,608,617
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 569257 as yet unmatched pairs. 38083 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:63,839,421
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 566913 as yet unmatched pairs. 35727 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:64,344,027
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 564898 as yet unmatched pairs. 33688 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:65,121,532
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 568104 as yet unmatched pairs. 36856 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:65,589,777
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 561049 as yet unmatched pairs. 29718 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:65,866,636
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 558343 as yet unmatched pairs. 26997 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:66,543,822
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 556233 as yet unmatched pairs. 24870 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:67,439,799
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 554016 as yet unmatched pairs. 22636 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:68,548,100
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 552049 as yet unmatched pairs. 20643 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:70,429,139
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 550836 as yet unmatched pairs. 19397 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:72,712,558
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 548475 as yet unmatched pairs. 17013 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:75,456,757
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 546252 as yet unmatched pairs. 14767 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:84,623,268
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 544224 as yet unmatched pairs. 12713 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:102,110,888
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 546537 as yet unmatched pairs. 14994 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:111,354,435
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 541298 as yet unmatched pairs. 9734 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:117,279,872
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 539322 as yet unmatched pairs. 7743 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:118,898,822
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 537950 as yet unmatched pairs. 6346 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:120,137,609
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 536197 as yet unmatched pairs. 4562 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:125,578,246
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 534990 as yet unmatched pairs. 3330 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:130,199,995
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 533595 as yet unmatched pairs. 1900 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:2,651,659
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 531038 as yet unmatched pairs. 54006 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr12:6,388,358
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 529673 as yet unmatched pairs. 52608 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:6,868,853
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 527895 as yet unmatched pairs. 50806 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:7,091,578
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 526057 as yet unmatched pairs. 48948 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr12:9,239,953
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 523841 as yet unmatched pairs. 46715 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:13,213,623
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 524722 as yet unmatched pairs. 47573 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:26,483,800
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 520813 as yet unmatched pairs. 43645 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:45,348,036
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 519854 as yet unmatched pairs. 42667 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:49,026,383
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 517752 as yet unmatched pairs. 40553 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:49,186,349
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 516873 as yet unmatched pairs. 39667 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,078
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 514705 as yet unmatched pairs. 37479 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:52,897,521
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 518110 as yet unmatched pairs. 40861 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:53,171,354
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 510996 as yet unmatched pairs. 33731 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,896
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 511056 as yet unmatched pairs. 33782 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:55,837,873
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 508594 as yet unmatched pairs. 31308 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:56,225,370
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 506358 as yet unmatched pairs. 29058 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,840
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 506007 as yet unmatched pairs. 28684 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,108,179
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 504215 as yet unmatched pairs. 26883 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:57,205,124
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 502431 as yet unmatched pairs. 25077 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:57,751,281
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 499963 as yet unmatched pairs. 22593 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:69,260,098
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 498046 as yet unmatched pairs. 20643 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:79,775,935
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 496365 as yet unmatched pairs. 18943 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:95,092,782
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 494689 as yet unmatched pairs. 17256 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:103,947,669
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 493410 as yet unmatched pairs. 15948 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:109,237,264
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 491450 as yet unmatched pairs. 13964 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,540
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 489443 as yet unmatched pairs. 11947 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:113,434,203
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 487810 as yet unmatched pairs. 10297 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:120,199,188
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 487275 as yet unmatched pairs. 9732 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:121,903,059
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 484405 as yet unmatched pairs. 6837 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:123,630,457
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 482471 as yet unmatched pairs. 4881 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:130,478,911
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 480424 as yet unmatched pairs. 2795 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:132,754,787
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 478526 as yet unmatched pairs. 865 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:21,176,994
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 477366 as yet unmatched pairs. 17997 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr13:30,461,331
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 475506 as yet unmatched pairs. 16120 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr13:39,014,177
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 473829 as yet unmatched pairs. 14430 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,167
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 473850 as yet unmatched pairs. 14426 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:52,417,061
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 470679 as yet unmatched pairs. 11235 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr13:75,286,910
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 468799 as yet unmatched pairs. 9329 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:97,997,591
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 468051 as yet unmatched pairs. 8541 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,318
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 465413 as yet unmatched pairs. 5871 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr13:110,357,535
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 464217 as yet unmatched pairs. 4658 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr13:110,914,830
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 462496 as yet unmatched pairs. 2907 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr14:20,383,874
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 459846 as yet unmatched pairs. 36841 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:22,771,056
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 458014 as yet unmatched pairs. 34996 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr14:23,324,154
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 456184 as yet unmatched pairs. 33153 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:24,299,941
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 453976 as yet unmatched pairs. 30939 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:35,308,963
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 452457 as yet unmatched pairs. 29404 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,597
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 453125 as yet unmatched pairs. 29987 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,306
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 450105 as yet unmatched pairs. 26903 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:64,052,818
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 447333 as yet unmatched pairs. 24107 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:68,789,841
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 446943 as yet unmatched pairs. 23695 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:71,672,431
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 444311 as yet unmatched pairs. 21040 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:74,809,481
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 442436 as yet unmatched pairs. 19148 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:77,616,502
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 440409 as yet unmatched pairs. 17100 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:92,709,704
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 439158 as yet unmatched pairs. 15827 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr14:99,515,316
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 437263 as yet unmatched pairs. 13906 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:102,049,522
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 436089 as yet unmatched pairs. 12714 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:103,685,584
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 433983 as yet unmatched pairs. 10592 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr14:104,942,974
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 433050 as yet unmatched pairs. 9639 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,051,226
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 429649 as yet unmatched pairs. 6233 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,183
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 430159 as yet unmatched pairs. 6719 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,386
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 451697 as yet unmatched pairs. 28250 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,585
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 434928 as yet unmatched pairs. 11469 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,112
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 425173 as yet unmatched pairs. 1700 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:28,229,529
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 422549 as yet unmatched pairs. 32206 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:32,732,126
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 424374 as yet unmatched pairs. 34023 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:39,589,059
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 421447 as yet unmatched pairs. 31087 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:41,092,067
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 417602 as yet unmatched pairs. 27225 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:42,733,141
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 415844 as yet unmatched pairs. 25457 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,052
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 421607 as yet unmatched pairs. 31216 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:48,490,040
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 413637 as yet unmatched pairs. 23233 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr15:56,394,739
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 411180 as yet unmatched pairs. 20765 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:60,355,980
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 411814 as yet unmatched pairs. 21384 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:63,775,222
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 408033 as yet unmatched pairs. 17577 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:66,503,398
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 406899 as yet unmatched pairs. 16432 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:72,209,798
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 406176 as yet unmatched pairs. 15683 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,592
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 405044 as yet unmatched pairs. 14538 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:75,490,285
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 400445 as yet unmatched pairs. 9926 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:78,990,258
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 398384 as yet unmatched pairs. 7849 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:85,543,777
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 397160 as yet unmatched pairs. 6613 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:88,907,222
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 398213 as yet unmatched pairs. 7661 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:90,227,960
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 394834 as yet unmatched pairs. 4270 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr15:98,913,072
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 391946 as yet unmatched pairs. 1374 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr16:293,656
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 390035 as yet unmatched pairs. 57347 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:717,112
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 387615 as yet unmatched pairs. 54924 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:1,743,338
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 385348 as yet unmatched pairs. 52647 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:2,108,566
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 382950 as yet unmatched pairs. 50234 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,182
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 380885 as yet unmatched pairs. 48153 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:3,026,873
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 379060 as yet unmatched pairs. 46311 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:4,381,640
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 377180 as yet unmatched pairs. 44419 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:10,907,539
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 375072 as yet unmatched pairs. 42300 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:14,920,813
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 373479 as yet unmatched pairs. 40693 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:15,720,882
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 374349 as yet unmatched pairs. 41557 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:16,287,789
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 370358 as yet unmatched pairs. 37557 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:18,348,588
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 370437 as yet unmatched pairs. 37634 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:18,892,241
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 368810 as yet unmatched pairs. 36005 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,946
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 367600 as yet unmatched pairs. 34786 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,986
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 367578 as yet unmatched pairs. 34761 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:27,573,900
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 365672 as yet unmatched pairs. 32849 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,349
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 365000 as yet unmatched pairs. 32154 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,599
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 363669 as yet unmatched pairs. 30820 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr16:29,985,711
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 361753 as yet unmatched pairs. 28890 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,245,457
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 359978 as yet unmatched pairs. 27102 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,739,492
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 358810 as yet unmatched pairs. 25928 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,301
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 357533 as yet unmatched pairs. 24642 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:50,368,171
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 354500 as yet unmatched pairs. 21592 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:56,626,909
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 352976 as yet unmatched pairs. 20055 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:58,530,321
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 350994 as yet unmatched pairs. 18062 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:67,194,953
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 349354 as yet unmatched pairs. 16408 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:68,235,634
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 347061 as yet unmatched pairs. 14105 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:70,120,498
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 345391 as yet unmatched pairs. 12420 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:72,796,067
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 343521 as yet unmatched pairs. 10535 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:80,684,607
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 341604 as yet unmatched pairs. 8590 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr16:85,805,733
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 340776 as yet unmatched pairs. 7720 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr16:88,646,115
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 342504 as yet unmatched pairs. 9434 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:89,305,216
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 335794 as yet unmatched pairs. 2705 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr17:560,444
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 333310 as yet unmatched pairs. 115943 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,214
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 331622 as yet unmatched pairs. 114246 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:4,173,914
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 329356 as yet unmatched pairs. 111966 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:5,422,766
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 327461 as yet unmatched pairs. 110069 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:7,417,299
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 325289 as yet unmatched pairs. 107891 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:7,884,888
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 323536 as yet unmatched pairs. 106135 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:15,239,513
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 323100 as yet unmatched pairs. 105691 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:17,813,573
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 320858 as yet unmatched pairs. 103439 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:21,284,950
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 318529 as yet unmatched pairs. 101088 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:28,637,115
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 317159 as yet unmatched pairs. 99715 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:29,566,883
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 314661 as yet unmatched pairs. 97213 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr17:32,360,690
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 314062 as yet unmatched pairs. 96610 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,536
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 311306 as yet unmatched pairs. 93848 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:38,008,242
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 310046 as yet unmatched pairs. 92574 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:38,914,369
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 309550 as yet unmatched pairs. 92072 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,316
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 309667 as yet unmatched pairs. 92176 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:40,123,096
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 305002 as yet unmatched pairs. 87504 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:40,885,084
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 302586 as yet unmatched pairs. 85081 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:41,819,260
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 301019 as yet unmatched pairs. 83504 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:42,388,329
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 298684 as yet unmatched pairs. 81161 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:43,016,379
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 297978 as yet unmatched pairs. 80442 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,157
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 297884 as yet unmatched pairs. 80342 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:45,405,994
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 293653 as yet unmatched pairs. 76101 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:47,619,759
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 292383 as yet unmatched pairs. 74818 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:48,862,917
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 290256 as yet unmatched pairs. 72673 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,628
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 298067 as yet unmatched pairs. 80476 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,907
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 308073 as yet unmatched pairs. 90473 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,894
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 360821 as yet unmatched pairs. 143219 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,578
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 331150 as yet unmatched pairs. 113546 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,239
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 317649 as yet unmatched pairs. 100041 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,862
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 346955 as yet unmatched pairs. 129327 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,373
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 331579 as yet unmatched pairs. 113949 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,477
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 331337 as yet unmatched pairs. 113698 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 127s. Last read position: chr17:50,192,651
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 326258 as yet unmatched pairs. 108611 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,959
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 332972 as yet unmatched pairs. 115320 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,383
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 335393 as yet unmatched pairs. 117729 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,811
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 337919 as yet unmatched pairs. 120244 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,573
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 322507 as yet unmatched pairs. 104825 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,181
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 332869 as yet unmatched pairs. 115182 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,660
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 335501 as yet unmatched pairs. 117812 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,963
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 302188 as yet unmatched pairs. 84496 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,290
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 300822 as yet unmatched pairs. 83120 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,353,901
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 253658 as yet unmatched pairs. 35955 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:51,260,603
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 251658 as yet unmatched pairs. 33942 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:58,504,336
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 249795 as yet unmatched pairs. 32067 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,202
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 249849 as yet unmatched pairs. 32106 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr17:63,433,384
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 246493 as yet unmatched pairs. 28741 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:64,506,078
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 245322 as yet unmatched pairs. 27561 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:68,428,725
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 243237 as yet unmatched pairs. 25468 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:74,748,937
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 242060 as yet unmatched pairs. 24280 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:75,522,196
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 240040 as yet unmatched pairs. 22256 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr17:75,754,619
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 237675 as yet unmatched pairs. 19879 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:76,081,671
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 234940 as yet unmatched pairs. 17139 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:77,490,785
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 233648 as yet unmatched pairs. 15840 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,379
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 233602 as yet unmatched pairs. 15789 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:80,319,270
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 230084 as yet unmatched pairs. 12261 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:81,106,876
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 228020 as yet unmatched pairs. 10187 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:81,696,666
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 225634 as yet unmatched pairs. 7794 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:81,983,550
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 223791 as yet unmatched pairs. 5944 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,214
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 221509 as yet unmatched pairs. 3659 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:82,900,692
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 219184 as yet unmatched pairs. 1321 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr18:9,396,294
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 216788 as yet unmatched pairs. 9046 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr18:23,894,313
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 215100 as yet unmatched pairs. 7337 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr18:42,013,511
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 212961 as yet unmatched pairs. 5180 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr18:54,224,389
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 211044 as yet unmatched pairs. 3255 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,429
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 210130 as yet unmatched pairs. 2329 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr19:572,664
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 210554 as yet unmatched pairs. 95249 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:984,404
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 205433 as yet unmatched pairs. 90121 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,257,018
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 203231 as yet unmatched pairs. 87914 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:1,827,635
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 200494 as yet unmatched pairs. 85167 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:2,343,103
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 198255 as yet unmatched pairs. 82911 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:3,638,893
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 195627 as yet unmatched pairs. 80279 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:4,682,702
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 193484 as yet unmatched pairs. 78130 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:5,843,873
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 191452 as yet unmatched pairs. 76090 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:6,714,054
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 190714 as yet unmatched pairs. 75351 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:7,909,755
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 187242 as yet unmatched pairs. 71876 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:9,986,554
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 185035 as yet unmatched pairs. 69667 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:10,627,762
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 183041 as yet unmatched pairs. 67671 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr19:11,176,590
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 181301 as yet unmatched pairs. 65923 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:12,670,001
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 179203 as yet unmatched pairs. 63823 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:13,090,295
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 177425 as yet unmatched pairs. 62039 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:14,404,494
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 175122 as yet unmatched pairs. 59724 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:15,181,584
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 174083 as yet unmatched pairs. 58681 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:15,431,102
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 170601 as yet unmatched pairs. 55192 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:17,211,749
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 168818 as yet unmatched pairs. 53407 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:18,144,999
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 165970 as yet unmatched pairs. 50557 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:18,787,545
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 163606 as yet unmatched pairs. 48186 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:23,361,511
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 161379 as yet unmatched pairs. 45953 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:35,019,431
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 159749 as yet unmatched pairs. 44321 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:35,787,421
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 157000 as yet unmatched pairs. 41570 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:38,647,839
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 156895 as yet unmatched pairs. 41447 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:38,921,579
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 153297 as yet unmatched pairs. 37843 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:39,485,693
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 151447 as yet unmatched pairs. 35983 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr19:40,374,605
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 150257 as yet unmatched pairs. 34791 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr19:41,330,939
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 147389 as yet unmatched pairs. 31916 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:41,861,077
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 147706 as yet unmatched pairs. 32231 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:42,289,228
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 144832 as yet unmatched pairs. 29353 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:44,644,047
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 142274 as yet unmatched pairs. 26786 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 2s. Last read position: chr19:45,468,605
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 140865 as yet unmatched pairs. 25371 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:46,470,632
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 136752 as yet unmatched pairs. 21251 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:47,726,021
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 135053 as yet unmatched pairs. 19549 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:48,865,548
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 132571 as yet unmatched pairs. 17066 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,470,363
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 130618 as yet unmatched pairs. 15109 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,664,742
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 128713 as yet unmatched pairs. 13201 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:50,259,245
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 127367 as yet unmatched pairs. 11852 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:52,155,106
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 123766 as yet unmatched pairs. 8249 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:54,221,228
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 122315 as yet unmatched pairs. 6788 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,321,002
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 120035 as yet unmatched pairs. 4498 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:57,280,114
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 117710 as yet unmatched pairs. 2166 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:58,571,097
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 116007 as yet unmatched pairs. 460 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:3,738,680
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 113470 as yet unmatched pairs. 31393 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,119
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 111396 as yet unmatched pairs. 29315 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:25,225,185
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 111562 as yet unmatched pairs. 29480 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:31,801,359
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 107577 as yet unmatched pairs. 25490 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:34,413,808
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 106008 as yet unmatched pairs. 23916 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr20:35,617,767
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 103899 as yet unmatched pairs. 21802 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:36,892,940
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 102338 as yet unmatched pairs. 20235 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr20:41,166,832
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 100455 as yet unmatched pairs. 18344 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:44,987,285
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 98819 as yet unmatched pairs. 16691 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:46,063,373
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 97028 as yet unmatched pairs. 14896 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr20:49,253,714
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 95228 as yet unmatched pairs. 13091 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:53,256,006
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 93056 as yet unmatched pairs. 10908 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:58,903,530
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 93260 as yet unmatched pairs. 11107 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:62,314,405
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 89030 as yet unmatched pairs. 6872 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:62,911,322
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 87412 as yet unmatched pairs. 5246 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:63,694,382
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 84592 as yet unmatched pairs. 2423 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:6,116,995
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 82021 as yet unmatched pairs. 18061 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,962
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 81033 as yet unmatched pairs. 17071 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,298
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 80000 as yet unmatched pairs. 16033 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:26,844,413
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 79083 as yet unmatched pairs. 15116 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:33,613,583
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 77021 as yet unmatched pairs. 13048 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 2s. Last read position: chr21:38,821,633
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 75577 as yet unmatched pairs. 11601 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:42,853,647
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 73112 as yet unmatched pairs. 9134 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr21:44,567,824
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 71165 as yet unmatched pairs. 7187 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr21:45,510,096
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 71396 as yet unmatched pairs. 7418 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chr21:46,112,263
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 69354 as yet unmatched pairs. 5376 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr21:46,346,740
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 64571 as yet unmatched pairs. 592 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr22:19,851,552
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 62696 as yet unmatched pairs. 32055 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr22:21,686,527
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 60685 as yet unmatched pairs. 30042 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:23,781,245
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 59436 as yet unmatched pairs. 28784 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:26,499,214
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 56104 as yet unmatched pairs. 25443 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,664
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 56624 as yet unmatched pairs. 25960 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:31,091,204
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 53643 as yet unmatched pairs. 22979 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:35,648,589
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 50768 as yet unmatched pairs. 20100 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:36,306,427
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 49526 as yet unmatched pairs. 18855 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,639
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 47504 as yet unmatched pairs. 16832 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:38,498,533
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 44453 as yet unmatched pairs. 13778 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:40,402,198
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 42325 as yet unmatched pairs. 11650 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:41,675,068
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 41196 as yet unmatched pairs. 10521 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:43,172,458
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 38446 as yet unmatched pairs. 7769 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:49,885,850
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 36290 as yet unmatched pairs. 5613 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr22:50,455,358
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 34294 as yet unmatched pairs. 3609 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:50,776,684
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 31135 as yet unmatched pairs. 450 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:3,903,452
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 28843 as yet unmatched pairs. 22725 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 2s. Last read position: chrX:23,785,686
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 28903 as yet unmatched pairs. 22778 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chrX:41,557,032
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 25973 as yet unmatched pairs. 19848 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chrX:48,539,902
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 24022 as yet unmatched pairs. 17896 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:51,900,182
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 22294 as yet unmatched pairs. 16168 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:54,809,860
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 20837 as yet unmatched pairs. 14709 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:71,294,299
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 20039 as yet unmatched pairs. 13911 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:78,114,102
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 18105 as yet unmatched pairs. 11977 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:109,644,030
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 15945 as yet unmatched pairs. 9816 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:130,015,454
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 14447 as yet unmatched pairs. 8318 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:153,594,562
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 12950 as yet unmatched pairs. 6820 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:154,349,361
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 13091 as yet unmatched pairs. 6960 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:154,362,092
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 10452 as yet unmatched pairs. 4321 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:154,531,820
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 6677 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,109
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 5219 as yet unmatched pairs. 1393 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,502
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 3836 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:170,616
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 473 as yet unmatched pairs. 455 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 631632081 records. 0 pairs never matched.
INFO 2026-06-08 09:10:36 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140912; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:10:36 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:10:39 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:10:39 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:58 OpticalDuplicateFinder Large duplicate set. size = 1288
INFO 2026-06-08 09:10:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,410
INFO 2026-06-08 09:11:02 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:11:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,773
INFO 2026-06-08 09:11:25 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:11:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,943
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,323
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1081
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,013
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1592
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,080
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,995
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,518
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,960
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,037
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,350
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,499
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,634
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,297
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,589
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:11:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,060
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,300
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,921
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,673
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,112
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,780
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1395
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,616
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,023
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,612
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder Large duplicate set. size = 1395
INFO 2026-06-08 09:11:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,677
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,162
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,346
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1353
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,518
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,811
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1793
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,400
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,589
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,901
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1844
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,469
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 2066
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,187
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,150
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,883
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,405
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,879
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:11:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,365
INFO 2026-06-08 09:12:04 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:12:04 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:13:12 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:13:12 MarkDuplicates After generateDuplicateIndexes freeMemory: 203949144; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:13:12 MarkDuplicates Marking 271305999 records as duplicates.
INFO 2026-06-08 09:13:12 MarkDuplicates Found 19830172 optical duplicate clusters.
INFO 2026-06-08 09:13:12 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:13:29 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,864,124
INFO 2026-06-08 09:13:46 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:42,958,716
INFO 2026-06-08 09:14:02 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:116,584,829
INFO 2026-06-08 09:14:18 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 15s. Last read position: chr1:156,130,638
INFO 2026-06-08 09:14:34 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 15s. Last read position: chr1:203,707,939
INFO 2026-06-08 09:14:50 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr2:24,821,295
INFO 2026-06-08 09:15:06 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 15s. Last read position: chr2:55,558,859
INFO 2026-06-08 09:15:23 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:127,584,240
INFO 2026-06-08 09:15:39 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 16s. Last read position: chr2:208,302,261
INFO 2026-06-08 09:15:55 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 15s. Last read position: chr2:219,425,686
INFO 2026-06-08 09:16:11 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 16s. Last read position: chr3:36,856,186
INFO 2026-06-08 09:16:27 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 16s. Last read position: chr3:58,163,190
INFO 2026-06-08 09:16:43 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 16s. Last read position: chr3:183,844,257
INFO 2026-06-08 09:17:00 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 16s. Last read position: chr4:54,267,684
INFO 2026-06-08 09:17:16 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:03s. Time for last 10,000,000: 16s. Last read position: chr4:186,707,222
INFO 2026-06-08 09:17:32 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 16s. Last read position: chr5:128,110,157
INFO 2026-06-08 09:17:48 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:36s. Time for last 10,000,000: 16s. Last read position: chr5:154,755,918
INFO 2026-06-08 09:18:04 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 16s. Last read position: chr6:25,488,529
INFO 2026-06-08 09:18:20 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 16s. Last read position: chr6:33,412,385
INFO 2026-06-08 09:18:37 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 16s. Last read position: chr6:112,216,425
INFO 2026-06-08 09:18:53 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 16s. Last read position: chr7:5,376,200
INFO 2026-06-08 09:19:09 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 16s. Last read position: chr7:75,421,640
INFO 2026-06-08 09:19:26 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:13s. Time for last 10,000,000: 16s. Last read position: chr7:101,039,873
INFO 2026-06-08 09:19:42 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 16s. Last read position: chr7:155,745,389
INFO 2026-06-08 09:19:58 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 16s. Last read position: chr8:94,189,238
INFO 2026-06-08 09:20:14 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 15s. Last read position: chr8:143,863,116
INFO 2026-06-08 09:20:30 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:17s. Time for last 10,000,000: 16s. Last read position: chr9:34,637,047
INFO 2026-06-08 09:20:46 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 16s. Last read position: chr9:123,179,032
INFO 2026-06-08 09:21:03 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 16s. Last read position: chr9:137,813,361
INFO 2026-06-08 09:21:19 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 16s. Last read position: chr10:73,798,013
INFO 2026-06-08 09:21:35 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 16s. Last read position: chr10:133,350,109
INFO 2026-06-08 09:21:52 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 16s. Last read position: chr11:43,798,399
INFO 2026-06-08 09:22:08 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 16s. Last read position: chr11:65,589,777
INFO 2026-06-08 09:22:24 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 16s. Last read position: chr11:111,354,435
INFO 2026-06-08 09:22:40 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:27s. Time for last 10,000,000: 16s. Last read position: chr12:9,239,953
INFO 2026-06-08 09:22:56 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 16s. Last read position: chr12:55,837,873
INFO 2026-06-08 09:23:13 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 16s. Last read position: chr12:109,237,264
INFO 2026-06-08 09:23:29 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 16s. Last read position: chr13:39,014,177
INFO 2026-06-08 09:23:45 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 16s. Last read position: chr14:23,324,154
INFO 2026-06-08 09:24:01 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 16s. Last read position: chr14:92,709,704
INFO 2026-06-08 09:24:17 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 15s. Last read position: chr15:28,229,529
INFO 2026-06-08 09:24:33 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 16s. Last read position: chr15:66,503,398
INFO 2026-06-08 09:24:49 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:37s. Time for last 10,000,000: 16s. Last read position: chr16:717,112
INFO 2026-06-08 09:25:07 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 17s. Last read position: chr16:18,348,588
INFO 2026-06-08 09:25:24 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 17s. Last read position: chr16:31,190,301
INFO 2026-06-08 09:25:40 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 16s. Last read position: chr16:88,646,115
INFO 2026-06-08 09:25:57 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 16s. Last read position: chr17:21,284,950
INFO 2026-06-08 09:26:13 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 16s. Last read position: chr17:41,819,260
INFO 2026-06-08 09:26:29 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 16s. Last read position: chr17:50,188,578
INFO 2026-06-08 09:26:45 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 16s. Last read position: chr17:50,196,181
INFO 2026-06-08 09:27:01 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 15s. Last read position: chr17:68,428,725
INFO 2026-06-08 09:27:17 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:04s. Time for last 10,000,000: 15s. Last read position: chr17:81,983,550
INFO 2026-06-08 09:27:33 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 16s. Last read position: chr19:1,257,018
INFO 2026-06-08 09:27:49 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:37s. Time for last 10,000,000: 16s. Last read position: chr19:11,176,590
INFO 2026-06-08 09:28:05 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 16s. Last read position: chr19:35,019,431
INFO 2026-06-08 09:28:21 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: chr19:45,468,605
INFO 2026-06-08 09:28:37 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 16s. Last read position: chr19:57,280,114
INFO 2026-06-08 09:28:54 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 16s. Last read position: chr20:44,987,285
INFO 2026-06-08 09:29:10 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 15s. Last read position: chr21:8,443,298
INFO 2026-06-08 09:29:26 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 16s. Last read position: chr22:21,686,527
INFO 2026-06-08 09:29:42 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 16s. Last read position: chr22:41,675,068
INFO 2026-06-08 09:29:58 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:46s. Time for last 10,000,000: 16s. Last read position: chrX:54,809,860
INFO 2026-06-08 09:30:14 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:02s. Time for last 10,000,000: 16s. Last read position: GL000220.1:159,502
INFO 2026-06-08 09:30:24 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:30:24 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:30:24 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:30:24 MarkDuplicates Before output close freeMemory: 203905088; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:30:24 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:30:24 MarkDuplicates After output close freeMemory: 104152144; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:30:24 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.81 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory