File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/ec745621a7c834d8559887ee848ae0/.command.log
Size
2.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-d666f1-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/cd97931e8dc464db744e126dd399c1/aih-tih-sc-d666f1-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/ec745621a7c834d8559887ee848ae0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/ec745621a7c834d8559887ee848ae0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8a02fad495ea18cd197301692343e8/aih-tih-sc-d666f1-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
PRSS27--TPSB2
starfusion
ADCK5--ZC3H3
starfusion
arriba
KDM5A--NINJ2
starfusion
arriba
AL669831.1--SEPTIN14
starfusion
PTK2--RSPO2
starfusion
arriba
HERC4--FAM13C
starfusion
arriba
RBM14--RBM4B
arriba
TVP23C--CDRT4
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/9 [00:00<?, ?it/s]
Processing PRSS27--TPSB2:   0%|          | 0/9 [00:00<?, ?it/s]
Processing PRSS27--TPSB2:  11%|█         | 1/9 [00:00<00:00,  9.24it/s]
Processing ADCK5--ZC3H3:  11%|█         | 1/9 [00:00<00:00,  9.24it/s] 
Processing ADCK5--ZC3H3:  22%|██▏       | 2/9 [00:00<00:00,  9.47it/s]
Processing KDM5A--NINJ2:  22%|██▏       | 2/9 [00:00<00:00,  9.47it/s]
Processing KDM5A--NINJ2:  33%|███▎      | 3/9 [00:00<00:00,  9.55it/s]
Processing AL669831.1--SEPTIN14:  33%|███▎      | 3/9 [00:00<00:00,  9.55it/s]
Processing AL669831.1--SEPTIN14:  44%|████▍     | 4/9 [00:00<00:00,  9.59it/s]
Processing PTK2--RSPO2:  44%|████▍     | 4/9 [00:00<00:00,  9.59it/s]         
Processing PTK2--RSPO2:  56%|█████▌    | 5/9 [00:00<00:00,  9.61it/s]
Processing HERC4--FAM13C:  56%|█████▌    | 5/9 [00:00<00:00,  9.61it/s]
Processing HERC4--FAM13C:  67%|██████▋   | 6/9 [00:00<00:00,  9.62it/s]
Processing RBM14--RBM4B:  67%|██████▋   | 6/9 [00:00<00:00,  9.62it/s] 
Processing RBM14--RBM4B:  78%|███████▊  | 7/9 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  78%|███████▊  | 7/9 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  89%|████████▉ | 8/9 [00:00<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B:  89%|████████▉ | 8/9 [00:00<00:00,  9.63it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 9/9 [00:00<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 9/9 [00:00<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory