File Info
- Filename
- aih-tih-sc-d666f1-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/ec745621a7c834d8559887ee848ae0/aih-tih-sc-d666f1-R1_A23YTGFLT4_1.fusions.csv
- Size
- 2.4 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-d666f1-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| PRSS27--TPSB2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr16:2713529:-#chr16:1228814:-,junction_reads: 36,spanning_reads: 0,ffmp: 0.1217 | |
| ADCK5--ZC3H3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:144379490#chr8:143475585,reading-frame: in-frame,type: inversion,split_reads1: 26,split_reads2: 5,discordant_mates: 0,coverage1: 1517,coverage2: 664,confidence: high | position: chr8:144379490:+#chr8:143475585:-,junction_reads: 33,spanning_reads: 0,ffmp: 0.1248 | |
| KDM5A--NINJ2 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr12:313056#chr12:566178,reading-frame: in-frame,type: duplication,split_reads1: 4,split_reads2: 4,discordant_mates: 0,coverage1: 923,coverage2: 901,confidence: high | position: chr12:313056:-#chr12:566178:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0454 |
| AL669831.1--SEPTIN14 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:727712:-#chr7:55796092:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.034 | ||
| PTK2--RSPO2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:141001125#chr8:108082807,reading-frame: .,type: deletion,split_reads1: 2,split_reads2: 6,discordant_mates: 0,coverage1: 143,coverage2: 90,confidence: high | position: chr8:141001125:-#chr8:108082807:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0303 | |
| HERC4--FAM13C | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:67939588#chr10:59270109,reading-frame: out-of-frame,type: deletion,split_reads1: 1,split_reads2: 7,discordant_mates: 0,coverage1: 287,coverage2: 553,confidence: high | position: chr10:67939588:-#chr10:59270109:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0303 | |
| RBM14--RBM4B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:66617057#chr11:66677091,reading-frame: out-of-frame,type: inversion,split_reads1: 31,split_reads2: 17,discordant_mates: 0,coverage1: 4645,coverage2: 2441,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 20,split_reads2: 17,discordant_mates: 0,coverage1: 620,coverage2: 174,confidence: high | |
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 20,discordant_mates: 0,coverage1: 55,coverage2: 383,confidence: high |
10 rows