Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3c8d62dc6d65d71fe07b3391a2e13d/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ae17979fd473324056553ca9006c40/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ae17979fd473324056553ca9006c40/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/b0a41b2ba8998bf3da304055ad4b11/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c5643fa7f81cd0ecf8198fa965c624/aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-377071-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16641234) splicing reads. 270904 splicing junctions. 189788 known splicing junctions. 81116 novel splicing junctions.
sampling 10% (33282469) splicing reads. 332049 splicing junctions. 202937 known splicing junctions. 129112 novel splicing junctions.
sampling 15% (49923704) splicing reads. 375664 splicing junctions. 209996 known splicing junctions. 165668 novel splicing junctions.
sampling 20% (66564939) splicing reads. 410401 splicing junctions. 214838 known splicing junctions. 195563 novel splicing junctions.
sampling 25% (83206174) splicing reads. 439271 splicing junctions. 218313 known splicing junctions. 220958 novel splicing junctions.
sampling 30% (99847409) splicing reads. 463929 splicing junctions. 221019 known splicing junctions. 242910 novel splicing junctions.
sampling 35% (116488643) splicing reads. 485374 splicing junctions. 223198 known splicing junctions. 262176 novel splicing junctions.
sampling 40% (133129878) splicing reads. 504051 splicing junctions. 224941 known splicing junctions. 279110 novel splicing junctions.
sampling 45% (149771113) splicing reads. 520274 splicing junctions. 226416 known splicing junctions. 293858 novel splicing junctions.
sampling 50% (166412348) splicing reads. 534751 splicing junctions. 227626 known splicing junctions. 307125 novel splicing junctions.
sampling 55% (183053583) splicing reads. 547590 splicing junctions. 228697 known splicing junctions. 318893 novel splicing junctions.
sampling 60% (199694818) splicing reads. 558823 splicing junctions. 229602 known splicing junctions. 329221 novel splicing junctions.
sampling 65% (216336053) splicing reads. 568989 splicing junctions. 230394 known splicing junctions. 338595 novel splicing junctions.
sampling 70% (232977287) splicing reads. 578057 splicing junctions. 231118 known splicing junctions. 346939 novel splicing junctions.
sampling 75% (249618522) splicing reads. 586024 splicing junctions. 231715 known splicing junctions. 354309 novel splicing junctions.
sampling 80% (266259757) splicing reads. 593096 splicing junctions. 232239 known splicing junctions. 360857 novel splicing junctions.
sampling 85% (282900992) splicing reads. 599264 splicing junctions. 232720 known splicing junctions. 366544 novel splicing junctions.
sampling 90% (299542227) splicing reads. 604503 splicing junctions. 233101 known splicing junctions. 371402 novel splicing junctions.
sampling 95% (316183462) splicing reads. 608916 splicing junctions. 233424 known splicing junctions. 375492 novel splicing junctions.
sampling 100% (332824697) splicing reads. 612583 splicing junctions. 233694 known splicing junctions. 378889 novel splicing junctions.
null device 
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