File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3337a1df90e957b8e587cedcdade0d/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-96d0f6-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/aa15106d8b616cf0a67faebd763a09/aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3337a1df90e957b8e587cedcdade0d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3337a1df90e957b8e587cedcdade0d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1e28e16a2f3feb4b5e956f6febcc9c/aih-tih-sc-96d0f6-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PMS2P12--AC004980.4
starfusion
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
PCDHA10--PCDHAC2
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/8 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 1/8 [00:00<00:00,  9.22it/s]
Processing TLK2--AC240565.1:  12%|█▎        | 1/8 [00:00<00:00,  9.22it/s]  
Processing TLK2--AC240565.1:  25%|██▌       | 2/8 [00:00<00:00,  9.44it/s]
Processing PMS2P12--AC004980.4:  25%|██▌       | 2/8 [00:00<00:00,  9.44it/s]
Processing PMS2P12--AC004980.4:  38%|███▊      | 3/8 [00:00<00:00,  9.51it/s]
Processing AC092807.3--DDAH1:  38%|███▊      | 3/8 [00:00<00:00,  9.51it/s]  
Processing AC092807.3--DDAH1:  50%|█████     | 4/8 [00:00<00:00,  9.55it/s]
Processing TVP23C--CDRT4:  50%|█████     | 4/8 [00:00<00:00,  9.55it/s]    
Processing TVP23C--CDRT4:  62%|██████▎   | 5/8 [00:00<00:00,  9.57it/s]
Processing PCDHA10--PCDHAC1:  62%|██████▎   | 5/8 [00:00<00:00,  9.57it/s]
Processing PCDHA10--PCDHAC1:  75%|███████▌  | 6/8 [00:00<00:00,  9.59it/s]
Processing PCDHA10--PCDHA13:  75%|███████▌  | 6/8 [00:00<00:00,  9.59it/s]
Processing PCDHA10--PCDHA13:  88%|████████▊ | 7/8 [00:00<00:00,  9.60it/s]
Processing PCDHA10--PCDHAC2:  88%|████████▊ | 7/8 [00:00<00:00,  9.60it/s]
Processing PCDHA10--PCDHAC2: 100%|██████████| 8/8 [00:00<00:00,  9.61it/s]
Processing PCDHA10--PCDHAC2: 100%|██████████| 8/8 [00:00<00:00,  9.56it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory