Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/fcd5dfd06b74cd6610b3871a5e1d37/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/fcd5dfd06b74cd6610b3871a5e1d37/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/91160490ec60c855d0e236b48c3b60/aih-tih-sc-538ae3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-538ae3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-538ae3-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-538ae3-R1_A23YTGFLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:38:16.723 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:38:16 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-538ae3-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-538ae3-R1_A23YTGFLT4_1.md.bam --METRICS_FILE aih-tih-sc-538ae3-R1_A23YTGFLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:38:16 GMT 2026] Executing as ?@nf-59fcd5dfd06b74cd6610b3871a5e1d37-07f34-tfsrc on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:38:16 MarkDuplicates Start of doWork freeMemory: 105130624; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:38:16 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:38:16 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:38:22 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,388,012
INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 1972 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 09:38:25 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:3,476,042
INFO 2026-06-08 09:38:25 MarkDuplicates Tracking 3536 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 09:38:28 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,867,186
INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 6411 as yet unmatched pairs. 1599 records in RAM.
INFO 2026-06-08 09:38:30 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,960,751
INFO 2026-06-08 09:38:30 MarkDuplicates Tracking 6625 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 09:38:32 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,393,286
INFO 2026-06-08 09:38:32 MarkDuplicates Tracking 8059 as yet unmatched pairs. 364 records in RAM.
INFO 2026-06-08 09:38:35 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,233,067
INFO 2026-06-08 09:38:35 MarkDuplicates Tracking 9524 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 09:38:37 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,828,052
INFO 2026-06-08 09:38:37 MarkDuplicates Tracking 11138 as yet unmatched pairs. 518 records in RAM.
INFO 2026-06-08 09:38:40 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:22,659,558
INFO 2026-06-08 09:38:40 MarkDuplicates Tracking 12589 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-08 09:38:42 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:25,294,322
INFO 2026-06-08 09:38:42 MarkDuplicates Tracking 13654 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:27,283,338
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 15160 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 09:38:47 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:31,426,703
INFO 2026-06-08 09:38:47 MarkDuplicates Tracking 17064 as yet unmatched pairs. 715 records in RAM.
INFO 2026-06-08 09:38:50 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:32,770,684
INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 18218 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:35,609,317
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 19579 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 09:38:54 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:39,334,479
INFO 2026-06-08 09:38:54 MarkDuplicates Tracking 21188 as yet unmatched pairs. 533 records in RAM.
INFO 2026-06-08 09:38:57 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:40,984,909
INFO 2026-06-08 09:38:57 MarkDuplicates Tracking 22228 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 09:38:59 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:43,591,924
INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 23819 as yet unmatched pairs. 422 records in RAM.
INFO 2026-06-08 09:39:01 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:45,584,072
INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 25198 as yet unmatched pairs. 475 records in RAM.
INFO 2026-06-08 09:39:03 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:50,857,944
INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 26500 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 09:39:06 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:54,841,622
INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 27515 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:39:08 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:66,367,968
INFO 2026-06-08 09:39:08 MarkDuplicates Tracking 28866 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 09:39:10 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:85,654,007
INFO 2026-06-08 09:39:10 MarkDuplicates Tracking 30273 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-08 09:39:12 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:89,013,408
INFO 2026-06-08 09:39:12 MarkDuplicates Tracking 31803 as yet unmatched pairs. 602 records in RAM.
INFO 2026-06-08 09:39:14 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:99,870,452
INFO 2026-06-08 09:39:14 MarkDuplicates Tracking 32543 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 09:39:17 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:109,738,127
INFO 2026-06-08 09:39:17 MarkDuplicates Tracking 33879 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 09:39:20 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:112,713,554
INFO 2026-06-08 09:39:20 MarkDuplicates Tracking 35070 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 09:39:22 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:116,389,542
INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 39612 as yet unmatched pairs. 3310 records in RAM.
INFO 2026-06-08 09:39:24 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:119,948,436
INFO 2026-06-08 09:39:24 MarkDuplicates Tracking 38509 as yet unmatched pairs. 927 records in RAM.
INFO 2026-06-08 09:39:26 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:145,995,450
INFO 2026-06-08 09:39:26 MarkDuplicates Tracking 40252 as yet unmatched pairs. 1713 records in RAM.
INFO 2026-06-08 09:39:28 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:148,591,494
INFO 2026-06-08 09:39:28 MarkDuplicates Tracking 39327 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 09:39:30 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,138
INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 40530 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 09:39:31 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:150,509,717
INFO 2026-06-08 09:39:31 MarkDuplicates Tracking 41511 as yet unmatched pairs. 509 records in RAM.
INFO 2026-06-08 09:39:34 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:151,307,647
INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 42937 as yet unmatched pairs. 570 records in RAM.
INFO 2026-06-08 09:39:36 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:153,614,943
INFO 2026-06-08 09:39:36 MarkDuplicates Tracking 44681 as yet unmatched pairs. 889 records in RAM.
INFO 2026-06-08 09:39:38 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,648
INFO 2026-06-08 09:39:38 MarkDuplicates Tracking 58029 as yet unmatched pairs. 12837 records in RAM.
INFO 2026-06-08 09:39:41 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:154,869,912
INFO 2026-06-08 09:39:41 MarkDuplicates Tracking 46492 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 09:39:43 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:155,210,544
INFO 2026-06-08 09:39:43 MarkDuplicates Tracking 48151 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 09:39:45 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:155,957,710
INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 49694 as yet unmatched pairs. 675 records in RAM.
INFO 2026-06-08 09:39:47 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,970
INFO 2026-06-08 09:39:47 MarkDuplicates Tracking 56423 as yet unmatched pairs. 5729 records in RAM.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:156,726,914
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 52556 as yet unmatched pairs. 321 records in RAM.
INFO 2026-06-08 09:39:51 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:160,323,444
INFO 2026-06-08 09:39:51 MarkDuplicates Tracking 54319 as yet unmatched pairs. 628 records in RAM.
INFO 2026-06-08 09:39:53 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:161,781,985
INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 55711 as yet unmatched pairs. 752 records in RAM.
INFO 2026-06-08 09:39:55 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:169,106,877
INFO 2026-06-08 09:39:55 MarkDuplicates Tracking 62751 as yet unmatched pairs. 6341 records in RAM.
INFO 2026-06-08 09:39:58 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:171,517,652
INFO 2026-06-08 09:39:58 MarkDuplicates Tracking 58589 as yet unmatched pairs. 735 records in RAM.
INFO 2026-06-08 09:40:01 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:178,458,283
INFO 2026-06-08 09:40:01 MarkDuplicates Tracking 59395 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 09:40:03 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:183,122,203
INFO 2026-06-08 09:40:03 MarkDuplicates Tracking 61315 as yet unmatched pairs. 754 records in RAM.
INFO 2026-06-08 09:40:05 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:186,335,339
INFO 2026-06-08 09:40:05 MarkDuplicates Tracking 62924 as yet unmatched pairs. 1077 records in RAM.
INFO 2026-06-08 09:40:07 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:200,899,492
INFO 2026-06-08 09:40:07 MarkDuplicates Tracking 63858 as yet unmatched pairs. 837 records in RAM.
INFO 2026-06-08 09:40:09 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:202,741,525
INFO 2026-06-08 09:40:09 MarkDuplicates Tracking 64674 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:204,441,505
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 66281 as yet unmatched pairs. 585 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:206,931,671
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 73524 as yet unmatched pairs. 6525 records in RAM.
INFO 2026-06-08 09:40:16 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:206,937,210
INFO 2026-06-08 09:40:16 MarkDuplicates Tracking 75658 as yet unmatched pairs. 7118 records in RAM.
INFO 2026-06-08 09:40:18 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:207,752,243
INFO 2026-06-08 09:40:18 MarkDuplicates Tracking 73665 as yet unmatched pairs. 3775 records in RAM.
INFO 2026-06-08 09:40:20 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:212,997,302
INFO 2026-06-08 09:40:20 MarkDuplicates Tracking 71528 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 09:40:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr1:223,558,137
INFO 2026-06-08 09:40:23 MarkDuplicates Tracking 73672 as yet unmatched pairs. 1187 records in RAM.
INFO 2026-06-08 09:40:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr1:225,867,890
INFO 2026-06-08 09:40:25 MarkDuplicates Tracking 75862 as yet unmatched pairs. 2090 records in RAM.
INFO 2026-06-08 09:40:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:228,276,450
INFO 2026-06-08 09:40:27 MarkDuplicates Tracking 75447 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr1:234,607,333
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 78519 as yet unmatched pairs. 1557 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr1:243,646,016
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 78744 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-08 09:40:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:218,819
INFO 2026-06-08 09:40:34 MarkDuplicates Tracking 80144 as yet unmatched pairs. 78144 records in RAM.
INFO 2026-06-08 09:40:36 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:10,440,762
INFO 2026-06-08 09:40:36 MarkDuplicates Tracking 82291 as yet unmatched pairs. 80237 records in RAM.
INFO 2026-06-08 09:40:39 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:20,202,169
INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 82938 as yet unmatched pairs. 80854 records in RAM.
INFO 2026-06-08 09:40:41 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:25,743,870
INFO 2026-06-08 09:40:41 MarkDuplicates Tracking 84281 as yet unmatched pairs. 82157 records in RAM.
INFO 2026-06-08 09:40:43 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:27,333,742
INFO 2026-06-08 09:40:43 MarkDuplicates Tracking 85739 as yet unmatched pairs. 83592 records in RAM.
INFO 2026-06-08 09:40:46 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:30,640,415
INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 87340 as yet unmatched pairs. 85139 records in RAM.
INFO 2026-06-08 09:40:48 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,261
INFO 2026-06-08 09:40:48 MarkDuplicates Tracking 126832 as yet unmatched pairs. 82824 records in RAM.
INFO 2026-06-08 09:40:51 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,351
INFO 2026-06-08 09:40:51 MarkDuplicates Tracking 658369 as yet unmatched pairs. 52397 records in RAM.
INFO 2026-06-08 09:40:52 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,410
INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 721368 as yet unmatched pairs. 49004 records in RAM.
INFO 2026-06-08 09:40:54 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:38,856,368
INFO 2026-06-08 09:40:54 MarkDuplicates Tracking 752799 as yet unmatched pairs. 46242 records in RAM.
INFO 2026-06-08 09:40:57 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:43,592,330
INFO 2026-06-08 09:40:57 MarkDuplicates Tracking 751744 as yet unmatched pairs. 45149 records in RAM.
INFO 2026-06-08 09:40:59 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:47,375,239
INFO 2026-06-08 09:40:59 MarkDuplicates Tracking 755453 as yet unmatched pairs. 48813 records in RAM.
INFO 2026-06-08 09:41:01 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:54,631,428
INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 750542 as yet unmatched pairs. 43873 records in RAM.
INFO 2026-06-08 09:41:03 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:60,461,271
INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 747531 as yet unmatched pairs. 40837 records in RAM.
INFO 2026-06-08 09:41:05 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:65,088,509
INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 747734 as yet unmatched pairs. 40983 records in RAM.
INFO 2026-06-08 09:41:08 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:70,215,399
INFO 2026-06-08 09:41:08 MarkDuplicates Tracking 745662 as yet unmatched pairs. 38870 records in RAM.
INFO 2026-06-08 09:41:10 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:74,208,699
INFO 2026-06-08 09:41:10 MarkDuplicates Tracking 744095 as yet unmatched pairs. 37284 records in RAM.
INFO 2026-06-08 09:41:12 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:84,425,515
INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 742493 as yet unmatched pairs. 35662 records in RAM.
INFO 2026-06-08 09:41:14 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:86,170,815
INFO 2026-06-08 09:41:14 MarkDuplicates Tracking 741630 as yet unmatched pairs. 34774 records in RAM.
INFO 2026-06-08 09:41:16 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:90,245,236
INFO 2026-06-08 09:41:16 MarkDuplicates Tracking 740119 as yet unmatched pairs. 33215 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:96,867,794
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 739111 as yet unmatched pairs. 32174 records in RAM.
INFO 2026-06-08 09:41:21 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:101,005,972
INFO 2026-06-08 09:41:21 MarkDuplicates Tracking 745078 as yet unmatched pairs. 38089 records in RAM.
INFO 2026-06-08 09:41:23 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:108,730,873
INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 738778 as yet unmatched pairs. 31753 records in RAM.
INFO 2026-06-08 09:41:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:109,614,906
INFO 2026-06-08 09:41:25 MarkDuplicates Tracking 736263 as yet unmatched pairs. 29213 records in RAM.
INFO 2026-06-08 09:41:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:111,822,502
INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 735261 as yet unmatched pairs. 28182 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:113,942,246
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 734802 as yet unmatched pairs. 27692 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:127,719,467
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 733009 as yet unmatched pairs. 25850 records in RAM.
INFO 2026-06-08 09:41:33 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:135,709,435
INFO 2026-06-08 09:41:33 MarkDuplicates Tracking 731620 as yet unmatched pairs. 24401 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:157,538,595
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 730363 as yet unmatched pairs. 23084 records in RAM.
INFO 2026-06-08 09:41:38 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:169,091,803
INFO 2026-06-08 09:41:38 MarkDuplicates Tracking 729977 as yet unmatched pairs. 22668 records in RAM.
INFO 2026-06-08 09:41:40 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:172,491,480
INFO 2026-06-08 09:41:40 MarkDuplicates Tracking 730251 as yet unmatched pairs. 22921 records in RAM.
INFO 2026-06-08 09:41:42 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:178,451,017
INFO 2026-06-08 09:41:42 MarkDuplicates Tracking 726748 as yet unmatched pairs. 19381 records in RAM.
INFO 2026-06-08 09:41:44 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:186,637,093
INFO 2026-06-08 09:41:44 MarkDuplicates Tracking 726111 as yet unmatched pairs. 18715 records in RAM.
INFO 2026-06-08 09:41:46 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:190,514,487
INFO 2026-06-08 09:41:46 MarkDuplicates Tracking 724313 as yet unmatched pairs. 16898 records in RAM.
INFO 2026-06-08 09:41:49 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:197,497,284
INFO 2026-06-08 09:41:49 MarkDuplicates Tracking 724271 as yet unmatched pairs. 16834 records in RAM.
INFO 2026-06-08 09:41:51 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:202,284,345
INFO 2026-06-08 09:41:51 MarkDuplicates Tracking 722342 as yet unmatched pairs. 14859 records in RAM.
INFO 2026-06-08 09:41:53 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:207,767,845
INFO 2026-06-08 09:41:53 MarkDuplicates Tracking 721401 as yet unmatched pairs. 13884 records in RAM.
INFO 2026-06-08 09:41:56 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:215,383,382
INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 721636 as yet unmatched pairs. 14087 records in RAM.
INFO 2026-06-08 09:41:58 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:216,204,320
INFO 2026-06-08 09:41:58 MarkDuplicates Tracking 719381 as yet unmatched pairs. 11815 records in RAM.
INFO 2026-06-08 09:42:00 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:218,431,820
INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 717926 as yet unmatched pairs. 10326 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr2:219,540,326
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 716022 as yet unmatched pairs. 8390 records in RAM.
INFO 2026-06-08 09:42:04 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:230,446,826
INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 714696 as yet unmatched pairs. 7011 records in RAM.
INFO 2026-06-08 09:42:06 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:231,708,649
INFO 2026-06-08 09:42:06 MarkDuplicates Tracking 714890 as yet unmatched pairs. 7178 records in RAM.
INFO 2026-06-08 09:42:09 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr2:235,797,777
INFO 2026-06-08 09:42:09 MarkDuplicates Tracking 712055 as yet unmatched pairs. 4295 records in RAM.
INFO 2026-06-08 09:42:11 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:238,253,205
INFO 2026-06-08 09:42:11 MarkDuplicates Tracking 710466 as yet unmatched pairs. 2676 records in RAM.
INFO 2026-06-08 09:42:13 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:241,256,677
INFO 2026-06-08 09:42:13 MarkDuplicates Tracking 710030 as yet unmatched pairs. 2208 records in RAM.
INFO 2026-06-08 09:42:16 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:9,649,709
INFO 2026-06-08 09:42:16 MarkDuplicates Tracking 707378 as yet unmatched pairs. 36827 records in RAM.
INFO 2026-06-08 09:42:18 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr3:12,836,082
INFO 2026-06-08 09:42:18 MarkDuplicates Tracking 706939 as yet unmatched pairs. 36355 records in RAM.
INFO 2026-06-08 09:42:20 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:20,176,603
INFO 2026-06-08 09:42:20 MarkDuplicates Tracking 704670 as yet unmatched pairs. 34020 records in RAM.
INFO 2026-06-08 09:42:22 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:33,868,926
INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 703332 as yet unmatched pairs. 32632 records in RAM.
INFO 2026-06-08 09:42:25 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:39,410,948
INFO 2026-06-08 09:42:25 MarkDuplicates Tracking 704364 as yet unmatched pairs. 33636 records in RAM.
INFO 2026-06-08 09:42:27 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:42,908,818
INFO 2026-06-08 09:42:27 MarkDuplicates Tracking 700687 as yet unmatched pairs. 29944 records in RAM.
INFO 2026-06-08 09:42:29 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:47,017,654
INFO 2026-06-08 09:42:29 MarkDuplicates Tracking 699454 as yet unmatched pairs. 28679 records in RAM.
INFO 2026-06-08 09:42:31 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr3:48,416,055
INFO 2026-06-08 09:42:31 MarkDuplicates Tracking 698317 as yet unmatched pairs. 27516 records in RAM.
INFO 2026-06-08 09:42:33 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:48,979,614
INFO 2026-06-08 09:42:33 MarkDuplicates Tracking 696409 as yet unmatched pairs. 25590 records in RAM.
INFO 2026-06-08 09:42:36 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr3:49,375,580
INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 695029 as yet unmatched pairs. 24187 records in RAM.
INFO 2026-06-08 09:42:38 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr3:50,290,628
INFO 2026-06-08 09:42:38 MarkDuplicates Tracking 693754 as yet unmatched pairs. 22869 records in RAM.
INFO 2026-06-08 09:42:40 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:52,487,300
INFO 2026-06-08 09:42:40 MarkDuplicates Tracking 692163 as yet unmatched pairs. 21247 records in RAM.
INFO 2026-06-08 09:42:43 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:56,751,342
INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 690739 as yet unmatched pairs. 19799 records in RAM.
INFO 2026-06-08 09:42:45 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:58,430,854
INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 689705 as yet unmatched pairs. 18719 records in RAM.
INFO 2026-06-08 09:42:47 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:75,741,729
INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 688249 as yet unmatched pairs. 17220 records in RAM.
INFO 2026-06-08 09:42:49 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr3:101,686,488
INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 687136 as yet unmatched pairs. 16069 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr3:119,675,205
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 686805 as yet unmatched pairs. 15669 records in RAM.
INFO 2026-06-08 09:42:53 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr3:124,658,496
INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 684931 as yet unmatched pairs. 13761 records in RAM.
INFO 2026-06-08 09:42:56 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:128,067,515
INFO 2026-06-08 09:42:56 MarkDuplicates Tracking 685568 as yet unmatched pairs. 14358 records in RAM.
INFO 2026-06-08 09:42:58 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:131,024,851
INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 682085 as yet unmatched pairs. 10834 records in RAM.
INFO 2026-06-08 09:43:00 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:141,444,113
INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 681118 as yet unmatched pairs. 9822 records in RAM.
INFO 2026-06-08 09:43:03 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr3:150,544,489
INFO 2026-06-08 09:43:03 MarkDuplicates Tracking 680889 as yet unmatched pairs. 9572 records in RAM.
INFO 2026-06-08 09:43:05 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr3:168,032,563
INFO 2026-06-08 09:43:05 MarkDuplicates Tracking 678593 as yet unmatched pairs. 7246 records in RAM.
INFO 2026-06-08 09:43:07 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:180,610,197
INFO 2026-06-08 09:43:07 MarkDuplicates Tracking 677169 as yet unmatched pairs. 5766 records in RAM.
INFO 2026-06-08 09:43:09 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr3:184,334,785
INFO 2026-06-08 09:43:09 MarkDuplicates Tracking 676226 as yet unmatched pairs. 4795 records in RAM.
INFO 2026-06-08 09:43:11 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr3:189,995,366
INFO 2026-06-08 09:43:11 MarkDuplicates Tracking 674732 as yet unmatched pairs. 3272 records in RAM.
INFO 2026-06-08 09:43:13 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,689
INFO 2026-06-08 09:43:13 MarkDuplicates Tracking 676026 as yet unmatched pairs. 4514 records in RAM.
INFO 2026-06-08 09:43:15 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,920
INFO 2026-06-08 09:43:15 MarkDuplicates Tracking 676610 as yet unmatched pairs. 5093 records in RAM.
INFO 2026-06-08 09:43:17 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr3:196,075,268
INFO 2026-06-08 09:43:17 MarkDuplicates Tracking 673180 as yet unmatched pairs. 1648 records in RAM.
INFO 2026-06-08 09:43:19 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr4:1,024,975
INFO 2026-06-08 09:43:19 MarkDuplicates Tracking 671228 as yet unmatched pairs. 22167 records in RAM.
INFO 2026-06-08 09:43:21 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:2,693,516
INFO 2026-06-08 09:43:21 MarkDuplicates Tracking 669469 as yet unmatched pairs. 20385 records in RAM.
INFO 2026-06-08 09:43:24 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr4:7,064,158
INFO 2026-06-08 09:43:24 MarkDuplicates Tracking 667900 as yet unmatched pairs. 18779 records in RAM.
INFO 2026-06-08 09:43:26 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:19,760,369
INFO 2026-06-08 09:43:26 MarkDuplicates Tracking 666557 as yet unmatched pairs. 17393 records in RAM.
INFO 2026-06-08 09:43:28 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:39,454,533
INFO 2026-06-08 09:43:28 MarkDuplicates Tracking 666676 as yet unmatched pairs. 17459 records in RAM.
INFO 2026-06-08 09:43:30 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr4:48,677,349
INFO 2026-06-08 09:43:30 MarkDuplicates Tracking 664054 as yet unmatched pairs. 14792 records in RAM.
INFO 2026-06-08 09:43:33 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr4:56,999,674
INFO 2026-06-08 09:43:33 MarkDuplicates Tracking 663174 as yet unmatched pairs. 13880 records in RAM.
INFO 2026-06-08 09:43:35 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr4:73,139,801
INFO 2026-06-08 09:43:35 MarkDuplicates Tracking 661826 as yet unmatched pairs. 12503 records in RAM.
INFO 2026-06-08 09:43:37 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr4:76,710,197
INFO 2026-06-08 09:43:37 MarkDuplicates Tracking 660985 as yet unmatched pairs. 11632 records in RAM.
INFO 2026-06-08 09:43:39 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr4:83,076,552
INFO 2026-06-08 09:43:39 MarkDuplicates Tracking 659011 as yet unmatched pairs. 9604 records in RAM.
INFO 2026-06-08 09:43:41 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr4:94,657,526
INFO 2026-06-08 09:43:41 MarkDuplicates Tracking 658642 as yet unmatched pairs. 9203 records in RAM.
INFO 2026-06-08 09:43:43 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr4:108,622,596
INFO 2026-06-08 09:43:43 MarkDuplicates Tracking 656680 as yet unmatched pairs. 7194 records in RAM.
INFO 2026-06-08 09:43:45 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr4:122,336,223
INFO 2026-06-08 09:43:45 MarkDuplicates Tracking 655607 as yet unmatched pairs. 6073 records in RAM.
INFO 2026-06-08 09:43:48 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr4:143,440,363
INFO 2026-06-08 09:43:48 MarkDuplicates Tracking 654492 as yet unmatched pairs. 4923 records in RAM.
INFO 2026-06-08 09:43:50 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr4:151,646,685
INFO 2026-06-08 09:43:50 MarkDuplicates Tracking 653299 as yet unmatched pairs. 3701 records in RAM.
INFO 2026-06-08 09:43:53 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr4:169,689,103
INFO 2026-06-08 09:43:53 MarkDuplicates Tracking 651948 as yet unmatched pairs. 2311 records in RAM.
INFO 2026-06-08 09:43:55 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr4:186,611,691
INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 651826 as yet unmatched pairs. 2164 records in RAM.
INFO 2026-06-08 09:43:57 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr5:462,256
INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 649547 as yet unmatched pairs. 37183 records in RAM.
INFO 2026-06-08 09:43:59 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:10,261,633
INFO 2026-06-08 09:43:59 MarkDuplicates Tracking 648426 as yet unmatched pairs. 36026 records in RAM.
INFO 2026-06-08 09:44:01 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:14,461,301
INFO 2026-06-08 09:44:01 MarkDuplicates Tracking 647502 as yet unmatched pairs. 35071 records in RAM.
INFO 2026-06-08 09:44:04 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr5:32,143,795
INFO 2026-06-08 09:44:04 MarkDuplicates Tracking 645601 as yet unmatched pairs. 33142 records in RAM.
INFO 2026-06-08 09:44:06 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr5:40,681,064
INFO 2026-06-08 09:44:06 MarkDuplicates Tracking 644311 as yet unmatched pairs. 31811 records in RAM.
INFO 2026-06-08 09:44:08 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:55,378,476
INFO 2026-06-08 09:44:08 MarkDuplicates Tracking 643160 as yet unmatched pairs. 30633 records in RAM.
INFO 2026-06-08 09:44:10 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr5:69,175,396
INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 642653 as yet unmatched pairs. 30074 records in RAM.
INFO 2026-06-08 09:44:12 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:73,078,186
INFO 2026-06-08 09:44:12 MarkDuplicates Tracking 641121 as yet unmatched pairs. 28521 records in RAM.
INFO 2026-06-08 09:44:14 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr5:78,416,540
INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 639811 as yet unmatched pairs. 27176 records in RAM.
INFO 2026-06-08 09:44:16 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:91,287,274
INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 638516 as yet unmatched pairs. 25835 records in RAM.
INFO 2026-06-08 09:44:18 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:97,165,130
INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 637500 as yet unmatched pairs. 24801 records in RAM.
INFO 2026-06-08 09:44:21 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr5:119,116,206
INFO 2026-06-08 09:44:21 MarkDuplicates Tracking 636375 as yet unmatched pairs. 23624 records in RAM.
INFO 2026-06-08 09:44:23 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr5:128,148,777
INFO 2026-06-08 09:44:23 MarkDuplicates Tracking 637703 as yet unmatched pairs. 24913 records in RAM.
INFO 2026-06-08 09:44:25 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:132,897,069
INFO 2026-06-08 09:44:25 MarkDuplicates Tracking 633889 as yet unmatched pairs. 21070 records in RAM.
INFO 2026-06-08 09:44:28 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr5:135,578,794
INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 634932 as yet unmatched pairs. 22083 records in RAM.
INFO 2026-06-08 09:44:30 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr5:138,567,455
INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 631855 as yet unmatched pairs. 18981 records in RAM.
INFO 2026-06-08 09:44:32 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:140,558,613
INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 629632 as yet unmatched pairs. 16710 records in RAM.
INFO 2026-06-08 09:44:34 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr5:141,494,822
INFO 2026-06-08 09:44:34 MarkDuplicates Tracking 628670 as yet unmatched pairs. 15739 records in RAM.
INFO 2026-06-08 09:44:36 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr5:146,114,167
INFO 2026-06-08 09:44:36 MarkDuplicates Tracking 627155 as yet unmatched pairs. 14186 records in RAM.
INFO 2026-06-08 09:44:38 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,125,506
INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 626472 as yet unmatched pairs. 13472 records in RAM.
INFO 2026-06-08 09:44:40 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,287
INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 626099 as yet unmatched pairs. 13078 records in RAM.
INFO 2026-06-08 09:44:43 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr5:154,053,414
INFO 2026-06-08 09:44:43 MarkDuplicates Tracking 623106 as yet unmatched pairs. 10061 records in RAM.
INFO 2026-06-08 09:44:45 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr5:160,620,477
INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 622308 as yet unmatched pairs. 9239 records in RAM.
INFO 2026-06-08 09:44:47 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr5:171,391,716
INFO 2026-06-08 09:44:47 MarkDuplicates Tracking 629171 as yet unmatched pairs. 16061 records in RAM.
INFO 2026-06-08 09:44:49 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr5:172,935,210
INFO 2026-06-08 09:44:49 MarkDuplicates Tracking 620064 as yet unmatched pairs. 6942 records in RAM.
INFO 2026-06-08 09:44:51 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr5:177,294,803
INFO 2026-06-08 09:44:51 MarkDuplicates Tracking 618316 as yet unmatched pairs. 5164 records in RAM.
INFO 2026-06-08 09:44:54 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr5:179,601,922
INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 616679 as yet unmatched pairs. 3502 records in RAM.
INFO 2026-06-08 09:44:56 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr5:179,823,008
INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 620946 as yet unmatched pairs. 7740 records in RAM.
INFO 2026-06-08 09:44:58 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,942
INFO 2026-06-08 09:44:58 MarkDuplicates Tracking 614771 as yet unmatched pairs. 1549 records in RAM.
INFO 2026-06-08 09:45:01 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:2,948,456
INFO 2026-06-08 09:45:01 MarkDuplicates Tracking 613906 as yet unmatched pairs. 44413 records in RAM.
INFO 2026-06-08 09:45:03 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:7,248,726
INFO 2026-06-08 09:45:03 MarkDuplicates Tracking 612191 as yet unmatched pairs. 42672 records in RAM.
INFO 2026-06-08 09:45:05 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:12,122,719
INFO 2026-06-08 09:45:05 MarkDuplicates Tracking 610120 as yet unmatched pairs. 40568 records in RAM.
INFO 2026-06-08 09:45:07 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr6:24,551,435
INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 608651 as yet unmatched pairs. 39057 records in RAM.
INFO 2026-06-08 09:45:09 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:26,196,945
INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 610759 as yet unmatched pairs. 41133 records in RAM.
INFO 2026-06-08 09:45:11 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:27,147,171
INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 607938 as yet unmatched pairs. 38283 records in RAM.
INFO 2026-06-08 09:45:13 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:28,297,929
INFO 2026-06-08 09:45:13 MarkDuplicates Tracking 604712 as yet unmatched pairs. 35028 records in RAM.
INFO 2026-06-08 09:45:15 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr6:30,489,546
INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 603817 as yet unmatched pairs. 34110 records in RAM.
INFO 2026-06-08 09:45:17 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr6:30,912,411
INFO 2026-06-08 09:45:17 MarkDuplicates Tracking 602203 as yet unmatched pairs. 32477 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:31,628,223
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 601218 as yet unmatched pairs. 31472 records in RAM.
INFO 2026-06-08 09:45:21 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr6:31,736,298
INFO 2026-06-08 09:45:21 MarkDuplicates Tracking 601773 as yet unmatched pairs. 32008 records in RAM.
INFO 2026-06-08 09:45:23 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:31,869,208
INFO 2026-06-08 09:45:23 MarkDuplicates Tracking 600383 as yet unmatched pairs. 30608 records in RAM.
INFO 2026-06-08 09:45:25 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:32,198,672
INFO 2026-06-08 09:45:25 MarkDuplicates Tracking 597000 as yet unmatched pairs. 27197 records in RAM.
INFO 2026-06-08 09:45:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,277,781
INFO 2026-06-08 09:45:27 MarkDuplicates Tracking 595603 as yet unmatched pairs. 25775 records in RAM.
INFO 2026-06-08 09:45:30 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr6:33,688,244
INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 594492 as yet unmatched pairs. 24639 records in RAM.
INFO 2026-06-08 09:45:32 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr6:36,200,336
INFO 2026-06-08 09:45:32 MarkDuplicates Tracking 592975 as yet unmatched pairs. 23083 records in RAM.
INFO 2026-06-08 09:45:34 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr6:42,105,467
INFO 2026-06-08 09:45:34 MarkDuplicates Tracking 591966 as yet unmatched pairs. 22039 records in RAM.
INFO 2026-06-08 09:45:37 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:43,504,797
INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 589962 as yet unmatched pairs. 20024 records in RAM.
INFO 2026-06-08 09:45:39 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:45,105,981
INFO 2026-06-08 09:45:39 MarkDuplicates Tracking 588534 as yet unmatched pairs. 18562 records in RAM.
INFO 2026-06-08 09:45:41 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr6:56,482,126
INFO 2026-06-08 09:45:41 MarkDuplicates Tracking 587878 as yet unmatched pairs. 17841 records in RAM.
INFO 2026-06-08 09:45:43 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr6:70,252,126
INFO 2026-06-08 09:45:43 MarkDuplicates Tracking 586515 as yet unmatched pairs. 16466 records in RAM.
INFO 2026-06-08 09:45:45 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr6:75,663,406
INFO 2026-06-08 09:45:45 MarkDuplicates Tracking 585253 as yet unmatched pairs. 15181 records in RAM.
INFO 2026-06-08 09:45:47 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:87,216,357
INFO 2026-06-08 09:45:47 MarkDuplicates Tracking 584121 as yet unmatched pairs. 14007 records in RAM.
INFO 2026-06-08 09:45:50 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr6:105,323,742
INFO 2026-06-08 09:45:50 MarkDuplicates Tracking 582699 as yet unmatched pairs. 12557 records in RAM.
INFO 2026-06-08 09:45:52 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr6:109,466,422
INFO 2026-06-08 09:45:52 MarkDuplicates Tracking 581187 as yet unmatched pairs. 10997 records in RAM.
INFO 2026-06-08 09:45:54 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr6:118,815,334
INFO 2026-06-08 09:45:54 MarkDuplicates Tracking 579872 as yet unmatched pairs. 9650 records in RAM.
INFO 2026-06-08 09:45:56 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr6:132,463,926
INFO 2026-06-08 09:45:56 MarkDuplicates Tracking 579061 as yet unmatched pairs. 8809 records in RAM.
INFO 2026-06-08 09:45:58 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr6:138,096,391
INFO 2026-06-08 09:45:58 MarkDuplicates Tracking 578209 as yet unmatched pairs. 7938 records in RAM.
INFO 2026-06-08 09:46:00 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr6:145,943,505
INFO 2026-06-08 09:46:00 MarkDuplicates Tracking 576163 as yet unmatched pairs. 5861 records in RAM.
INFO 2026-06-08 09:46:02 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr6:156,778,074
INFO 2026-06-08 09:46:02 MarkDuplicates Tracking 574915 as yet unmatched pairs. 4581 records in RAM.
INFO 2026-06-08 09:46:04 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr6:158,771,392
INFO 2026-06-08 09:46:04 MarkDuplicates Tracking 577352 as yet unmatched pairs. 6980 records in RAM.
INFO 2026-06-08 09:46:07 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr6:160,061,907
INFO 2026-06-08 09:46:07 MarkDuplicates Tracking 572620 as yet unmatched pairs. 2223 records in RAM.
INFO 2026-06-08 09:46:09 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr6:170,317,563
INFO 2026-06-08 09:46:09 MarkDuplicates Tracking 571081 as yet unmatched pairs. 643 records in RAM.
INFO 2026-06-08 09:46:11 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr7:2,255,096
INFO 2026-06-08 09:46:11 MarkDuplicates Tracking 569103 as yet unmatched pairs. 51891 records in RAM.
INFO 2026-06-08 09:46:14 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr7:5,332,727
INFO 2026-06-08 09:46:14 MarkDuplicates Tracking 568434 as yet unmatched pairs. 51190 records in RAM.
INFO 2026-06-08 09:46:16 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,071
INFO 2026-06-08 09:46:16 MarkDuplicates Tracking 582972 as yet unmatched pairs. 65694 records in RAM.
INFO 2026-06-08 09:46:18 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,556
INFO 2026-06-08 09:46:18 MarkDuplicates Tracking 571190 as yet unmatched pairs. 53902 records in RAM.
INFO 2026-06-08 09:46:20 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr7:10,982,853
INFO 2026-06-08 09:46:20 MarkDuplicates Tracking 563429 as yet unmatched pairs. 46118 records in RAM.
INFO 2026-06-08 09:46:22 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:24,865,342
INFO 2026-06-08 09:46:22 MarkDuplicates Tracking 562228 as yet unmatched pairs. 44893 records in RAM.
INFO 2026-06-08 09:46:24 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:30,598,807
INFO 2026-06-08 09:46:24 MarkDuplicates Tracking 561322 as yet unmatched pairs. 43964 records in RAM.
INFO 2026-06-08 09:46:26 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr7:42,795,570
INFO 2026-06-08 09:46:26 MarkDuplicates Tracking 559299 as yet unmatched pairs. 41906 records in RAM.
INFO 2026-06-08 09:46:28 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:44,756,481
INFO 2026-06-08 09:46:28 MarkDuplicates Tracking 558871 as yet unmatched pairs. 41450 records in RAM.
INFO 2026-06-08 09:46:31 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr7:55,019,232
INFO 2026-06-08 09:46:31 MarkDuplicates Tracking 557593 as yet unmatched pairs. 40148 records in RAM.
INFO 2026-06-08 09:46:33 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr7:66,778,825
INFO 2026-06-08 09:46:33 MarkDuplicates Tracking 555289 as yet unmatched pairs. 37812 records in RAM.
INFO 2026-06-08 09:46:35 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:73,537,368
INFO 2026-06-08 09:46:35 MarkDuplicates Tracking 554807 as yet unmatched pairs. 37308 records in RAM.
INFO 2026-06-08 09:46:37 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr7:75,024,696
INFO 2026-06-08 09:46:37 MarkDuplicates Tracking 552992 as yet unmatched pairs. 35470 records in RAM.
INFO 2026-06-08 09:46:39 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr7:76,303,065
INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 553883 as yet unmatched pairs. 36336 records in RAM.
INFO 2026-06-08 09:46:41 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr7:89,356,631
INFO 2026-06-08 09:46:41 MarkDuplicates Tracking 550667 as yet unmatched pairs. 33092 records in RAM.
INFO 2026-06-08 09:46:43 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 2s. Last read position: chr7:94,409,564
INFO 2026-06-08 09:46:43 MarkDuplicates Tracking 550860 as yet unmatched pairs. 33273 records in RAM.
INFO 2026-06-08 09:46:45 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr7:99,030,625
INFO 2026-06-08 09:46:45 MarkDuplicates Tracking 548357 as yet unmatched pairs. 30739 records in RAM.
INFO 2026-06-08 09:46:48 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr7:100,352,374
INFO 2026-06-08 09:46:48 MarkDuplicates Tracking 548156 as yet unmatched pairs. 30518 records in RAM.
INFO 2026-06-08 09:46:50 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,956,578
INFO 2026-06-08 09:46:50 MarkDuplicates Tracking 546006 as yet unmatched pairs. 28338 records in RAM.
INFO 2026-06-08 09:46:52 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr7:100,992,586
INFO 2026-06-08 09:46:52 MarkDuplicates Tracking 545421 as yet unmatched pairs. 27744 records in RAM.
INFO 2026-06-08 09:46:54 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,146
INFO 2026-06-08 09:46:54 MarkDuplicates Tracking 547189 as yet unmatched pairs. 29506 records in RAM.
INFO 2026-06-08 09:46:56 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,656
INFO 2026-06-08 09:46:56 MarkDuplicates Tracking 547960 as yet unmatched pairs. 30274 records in RAM.
INFO 2026-06-08 09:46:57 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,898
INFO 2026-06-08 09:46:57 MarkDuplicates Tracking 546984 as yet unmatched pairs. 29296 records in RAM.
INFO 2026-06-08 09:46:59 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,639
INFO 2026-06-08 09:46:59 MarkDuplicates Tracking 546383 as yet unmatched pairs. 28693 records in RAM.
INFO 2026-06-08 09:47:00 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,971
INFO 2026-06-08 09:47:00 MarkDuplicates Tracking 545581 as yet unmatched pairs. 27891 records in RAM.
INFO 2026-06-08 09:47:01 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,263
INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 549159 as yet unmatched pairs. 31469 records in RAM.
INFO 2026-06-08 09:47:03 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,024
INFO 2026-06-08 09:47:03 MarkDuplicates Tracking 546177 as yet unmatched pairs. 28484 records in RAM.
INFO 2026-06-08 09:47:04 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,273
INFO 2026-06-08 09:47:04 MarkDuplicates Tracking 548075 as yet unmatched pairs. 30381 records in RAM.
INFO 2026-06-08 09:47:06 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,448
INFO 2026-06-08 09:47:06 MarkDuplicates Tracking 572361 as yet unmatched pairs. 54666 records in RAM.
INFO 2026-06-08 09:47:07 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,738
INFO 2026-06-08 09:47:07 MarkDuplicates Tracking 563528 as yet unmatched pairs. 45829 records in RAM.
INFO 2026-06-08 09:47:10 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,901
INFO 2026-06-08 09:47:10 MarkDuplicates Tracking 585479 as yet unmatched pairs. 67773 records in RAM.
INFO 2026-06-08 09:47:11 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,142
INFO 2026-06-08 09:47:11 MarkDuplicates Tracking 561525 as yet unmatched pairs. 43816 records in RAM.
INFO 2026-06-08 09:47:13 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,478
INFO 2026-06-08 09:47:13 MarkDuplicates Tracking 566512 as yet unmatched pairs. 48802 records in RAM.
INFO 2026-06-08 09:47:15 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,839
INFO 2026-06-08 09:47:15 MarkDuplicates Tracking 548972 as yet unmatched pairs. 31257 records in RAM.
INFO 2026-06-08 09:47:17 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,038
INFO 2026-06-08 09:47:17 MarkDuplicates Tracking 551596 as yet unmatched pairs. 33874 records in RAM.
INFO 2026-06-08 09:47:18 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,324
INFO 2026-06-08 09:47:18 MarkDuplicates Tracking 546798 as yet unmatched pairs. 29076 records in RAM.
INFO 2026-06-08 09:47:20 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,566
INFO 2026-06-08 09:47:20 MarkDuplicates Tracking 552984 as yet unmatched pairs. 35262 records in RAM.
INFO 2026-06-08 09:47:21 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,766
INFO 2026-06-08 09:47:21 MarkDuplicates Tracking 560386 as yet unmatched pairs. 42660 records in RAM.
INFO 2026-06-08 09:47:22 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,014
INFO 2026-06-08 09:47:22 MarkDuplicates Tracking 549821 as yet unmatched pairs. 32095 records in RAM.
INFO 2026-06-08 09:47:24 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,548
INFO 2026-06-08 09:47:24 MarkDuplicates Tracking 563291 as yet unmatched pairs. 45555 records in RAM.
INFO 2026-06-08 09:47:26 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,853
INFO 2026-06-08 09:47:26 MarkDuplicates Tracking 559347 as yet unmatched pairs. 41607 records in RAM.
INFO 2026-06-08 09:47:28 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,189
INFO 2026-06-08 09:47:28 MarkDuplicates Tracking 557350 as yet unmatched pairs. 39602 records in RAM.
INFO 2026-06-08 09:47:30 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,515
INFO 2026-06-08 09:47:30 MarkDuplicates Tracking 549903 as yet unmatched pairs. 32138 records in RAM.
INFO 2026-06-08 09:47:31 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,826
INFO 2026-06-08 09:47:31 MarkDuplicates Tracking 580155 as yet unmatched pairs. 62378 records in RAM.
INFO 2026-06-08 09:47:33 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,082
INFO 2026-06-08 09:47:33 MarkDuplicates Tracking 547233 as yet unmatched pairs. 29441 records in RAM.
INFO 2026-06-08 09:47:35 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,404
INFO 2026-06-08 09:47:35 MarkDuplicates Tracking 543195 as yet unmatched pairs. 25400 records in RAM.
INFO 2026-06-08 09:47:36 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,574
INFO 2026-06-08 09:47:36 MarkDuplicates Tracking 540115 as yet unmatched pairs. 22320 records in RAM.
INFO 2026-06-08 09:47:38 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,819
INFO 2026-06-08 09:47:38 MarkDuplicates Tracking 541246 as yet unmatched pairs. 23451 records in RAM.
INFO 2026-06-08 09:47:39 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,301
INFO 2026-06-08 09:47:39 MarkDuplicates Tracking 554910 as yet unmatched pairs. 37110 records in RAM.
INFO 2026-06-08 09:47:41 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,588
INFO 2026-06-08 09:47:41 MarkDuplicates Tracking 540180 as yet unmatched pairs. 22368 records in RAM.
INFO 2026-06-08 09:47:43 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,407
INFO 2026-06-08 09:47:43 MarkDuplicates Tracking 534331 as yet unmatched pairs. 16518 records in RAM.
INFO 2026-06-08 09:47:44 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,019
INFO 2026-06-08 09:47:44 MarkDuplicates Tracking 533474 as yet unmatched pairs. 15661 records in RAM.
INFO 2026-06-08 09:47:46 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:101,013,016
INFO 2026-06-08 09:47:46 MarkDuplicates Tracking 536409 as yet unmatched pairs. 18589 records in RAM.
INFO 2026-06-08 09:47:48 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr7:102,543,503
INFO 2026-06-08 09:47:48 MarkDuplicates Tracking 532092 as yet unmatched pairs. 14261 records in RAM.
INFO 2026-06-08 09:47:50 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr7:106,263,494
INFO 2026-06-08 09:47:50 MarkDuplicates Tracking 531625 as yet unmatched pairs. 13773 records in RAM.
INFO 2026-06-08 09:47:52 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr7:116,257,408
INFO 2026-06-08 09:47:52 MarkDuplicates Tracking 529715 as yet unmatched pairs. 11839 records in RAM.
INFO 2026-06-08 09:47:54 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr7:118,184,216
INFO 2026-06-08 09:47:54 MarkDuplicates Tracking 528841 as yet unmatched pairs. 10954 records in RAM.
INFO 2026-06-08 09:47:56 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr7:128,085,744
INFO 2026-06-08 09:47:56 MarkDuplicates Tracking 530934 as yet unmatched pairs. 13033 records in RAM.
INFO 2026-06-08 09:47:58 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr7:134,678,952
INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 525997 as yet unmatched pairs. 8056 records in RAM.
INFO 2026-06-08 09:48:00 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr7:139,079,807
INFO 2026-06-08 09:48:00 MarkDuplicates Tracking 525645 as yet unmatched pairs. 7679 records in RAM.
INFO 2026-06-08 09:48:03 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr7:143,286,729
INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 523471 as yet unmatched pairs. 5493 records in RAM.
INFO 2026-06-08 09:48:04 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr7:148,730,191
INFO 2026-06-08 09:48:04 MarkDuplicates Tracking 523092 as yet unmatched pairs. 5092 records in RAM.
INFO 2026-06-08 09:48:07 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr7:150,852,540
INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 521420 as yet unmatched pairs. 3403 records in RAM.
INFO 2026-06-08 09:48:09 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr7:152,179,969
INFO 2026-06-08 09:48:09 MarkDuplicates Tracking 519653 as yet unmatched pairs. 1620 records in RAM.
INFO 2026-06-08 09:48:11 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr8:1,771,532
INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 518267 as yet unmatched pairs. 34668 records in RAM.
INFO 2026-06-08 09:48:13 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr8:12,628,780
INFO 2026-06-08 09:48:13 MarkDuplicates Tracking 516689 as yet unmatched pairs. 33058 records in RAM.
INFO 2026-06-08 09:48:16 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr8:22,404,722
INFO 2026-06-08 09:48:16 MarkDuplicates Tracking 515561 as yet unmatched pairs. 31893 records in RAM.
INFO 2026-06-08 09:48:18 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr8:24,331,191
INFO 2026-06-08 09:48:18 MarkDuplicates Tracking 513935 as yet unmatched pairs. 30252 records in RAM.
INFO 2026-06-08 09:48:20 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr8:30,180,532
INFO 2026-06-08 09:48:20 MarkDuplicates Tracking 512776 as yet unmatched pairs. 29072 records in RAM.
INFO 2026-06-08 09:48:22 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr8:37,698,448
INFO 2026-06-08 09:48:22 MarkDuplicates Tracking 511352 as yet unmatched pairs. 27618 records in RAM.
INFO 2026-06-08 09:48:24 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,961
INFO 2026-06-08 09:48:24 MarkDuplicates Tracking 513192 as yet unmatched pairs. 29439 records in RAM.
INFO 2026-06-08 09:48:26 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr8:43,083,163
INFO 2026-06-08 09:48:26 MarkDuplicates Tracking 508754 as yet unmatched pairs. 24981 records in RAM.
INFO 2026-06-08 09:48:29 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr8:54,136,654
INFO 2026-06-08 09:48:29 MarkDuplicates Tracking 507137 as yet unmatched pairs. 23341 records in RAM.
INFO 2026-06-08 09:48:31 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr8:65,761,781
INFO 2026-06-08 09:48:31 MarkDuplicates Tracking 506017 as yet unmatched pairs. 22199 records in RAM.
INFO 2026-06-08 09:48:33 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr8:74,321,110
INFO 2026-06-08 09:48:33 MarkDuplicates Tracking 504868 as yet unmatched pairs. 21019 records in RAM.
INFO 2026-06-08 09:48:35 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr8:94,165,943
INFO 2026-06-08 09:48:35 MarkDuplicates Tracking 504978 as yet unmatched pairs. 21104 records in RAM.
INFO 2026-06-08 09:48:37 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr8:100,239,384
INFO 2026-06-08 09:48:37 MarkDuplicates Tracking 502352 as yet unmatched pairs. 18459 records in RAM.
INFO 2026-06-08 09:48:39 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr8:102,287,497
INFO 2026-06-08 09:48:39 MarkDuplicates Tracking 501064 as yet unmatched pairs. 17149 records in RAM.
INFO 2026-06-08 09:48:42 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr8:119,240,241
INFO 2026-06-08 09:48:42 MarkDuplicates Tracking 500356 as yet unmatched pairs. 16416 records in RAM.
INFO 2026-06-08 09:48:44 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,432
INFO 2026-06-08 09:48:44 MarkDuplicates Tracking 499988 as yet unmatched pairs. 16029 records in RAM.
INFO 2026-06-08 09:48:46 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr8:140,761,174
INFO 2026-06-08 09:48:46 MarkDuplicates Tracking 497576 as yet unmatched pairs. 13572 records in RAM.
INFO 2026-06-08 09:48:48 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr8:143,727,514
INFO 2026-06-08 09:48:48 MarkDuplicates Tracking 496224 as yet unmatched pairs. 12181 records in RAM.
INFO 2026-06-08 09:48:50 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,653
INFO 2026-06-08 09:48:50 MarkDuplicates Tracking 494734 as yet unmatched pairs. 10685 records in RAM.
INFO 2026-06-08 09:48:51 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,304
INFO 2026-06-08 09:48:51 MarkDuplicates Tracking 497380 as yet unmatched pairs. 13322 records in RAM.
INFO 2026-06-08 09:48:53 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,524
INFO 2026-06-08 09:48:53 MarkDuplicates Tracking 493495 as yet unmatched pairs. 9436 records in RAM.
INFO 2026-06-08 09:48:54 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,881
INFO 2026-06-08 09:48:54 MarkDuplicates Tracking 495659 as yet unmatched pairs. 11596 records in RAM.
INFO 2026-06-08 09:48:56 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,056
INFO 2026-06-08 09:48:56 MarkDuplicates Tracking 491641 as yet unmatched pairs. 7566 records in RAM.
INFO 2026-06-08 09:48:58 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,535
INFO 2026-06-08 09:48:58 MarkDuplicates Tracking 491239 as yet unmatched pairs. 7164 records in RAM.
INFO 2026-06-08 09:48:59 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,869,212
INFO 2026-06-08 09:48:59 MarkDuplicates Tracking 491388 as yet unmatched pairs. 7313 records in RAM.
INFO 2026-06-08 09:49:01 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,512
INFO 2026-06-08 09:49:01 MarkDuplicates Tracking 491594 as yet unmatched pairs. 7501 records in RAM.
INFO 2026-06-08 09:49:03 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,984,046
INFO 2026-06-08 09:49:03 MarkDuplicates Tracking 487580 as yet unmatched pairs. 3460 records in RAM.
INFO 2026-06-08 09:49:05 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr8:144,412,781
INFO 2026-06-08 09:49:05 MarkDuplicates Tracking 485848 as yet unmatched pairs. 1709 records in RAM.
INFO 2026-06-08 09:49:08 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr9:744,557
INFO 2026-06-08 09:49:08 MarkDuplicates Tracking 484139 as yet unmatched pairs. 35680 records in RAM.
INFO 2026-06-08 09:49:10 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr9:12,821,643
INFO 2026-06-08 09:49:10 MarkDuplicates Tracking 483033 as yet unmatched pairs. 34509 records in RAM.
INFO 2026-06-08 09:49:12 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr9:22,006,098
INFO 2026-06-08 09:49:12 MarkDuplicates Tracking 481776 as yet unmatched pairs. 33239 records in RAM.
INFO 2026-06-08 09:49:14 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:33,953,355
INFO 2026-06-08 09:49:14 MarkDuplicates Tracking 480460 as yet unmatched pairs. 31903 records in RAM.
INFO 2026-06-08 09:49:16 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr9:35,675,761
INFO 2026-06-08 09:49:16 MarkDuplicates Tracking 479222 as yet unmatched pairs. 30649 records in RAM.
INFO 2026-06-08 09:49:18 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr9:37,588,821
INFO 2026-06-08 09:49:18 MarkDuplicates Tracking 478416 as yet unmatched pairs. 29824 records in RAM.
INFO 2026-06-08 09:49:20 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr9:71,729,889
INFO 2026-06-08 09:49:20 MarkDuplicates Tracking 477029 as yet unmatched pairs. 28412 records in RAM.
INFO 2026-06-08 09:49:22 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr9:83,062,756
INFO 2026-06-08 09:49:22 MarkDuplicates Tracking 475253 as yet unmatched pairs. 26608 records in RAM.
INFO 2026-06-08 09:49:24 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr9:91,717,307
INFO 2026-06-08 09:49:24 MarkDuplicates Tracking 473676 as yet unmatched pairs. 25014 records in RAM.
INFO 2026-06-08 09:49:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr9:93,543,287
INFO 2026-06-08 09:49:26 MarkDuplicates Tracking 473095 as yet unmatched pairs. 24409 records in RAM.
INFO 2026-06-08 09:49:29 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr9:98,228,958
INFO 2026-06-08 09:49:29 MarkDuplicates Tracking 471381 as yet unmatched pairs. 22673 records in RAM.
INFO 2026-06-08 09:49:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr9:106,928,811
INFO 2026-06-08 09:49:31 MarkDuplicates Tracking 469695 as yet unmatched pairs. 20968 records in RAM.
INFO 2026-06-08 09:49:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr9:112,111,630
INFO 2026-06-08 09:49:33 MarkDuplicates Tracking 468135 as yet unmatched pairs. 19381 records in RAM.
INFO 2026-06-08 09:49:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr9:115,031,568
INFO 2026-06-08 09:49:35 MarkDuplicates Tracking 467359 as yet unmatched pairs. 18579 records in RAM.
INFO 2026-06-08 09:49:37 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr9:121,766,577
INFO 2026-06-08 09:49:37 MarkDuplicates Tracking 465661 as yet unmatched pairs. 16874 records in RAM.
INFO 2026-06-08 09:49:39 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr9:125,240,240
INFO 2026-06-08 09:49:39 MarkDuplicates Tracking 466199 as yet unmatched pairs. 17384 records in RAM.
INFO 2026-06-08 09:49:42 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr9:127,867,978
INFO 2026-06-08 09:49:42 MarkDuplicates Tracking 463074 as yet unmatched pairs. 14222 records in RAM.
INFO 2026-06-08 09:49:44 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr9:128,263,035
INFO 2026-06-08 09:49:44 MarkDuplicates Tracking 461383 as yet unmatched pairs. 12511 records in RAM.
INFO 2026-06-08 09:49:46 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr9:128,822,276
INFO 2026-06-08 09:49:46 MarkDuplicates Tracking 460096 as yet unmatched pairs. 11209 records in RAM.
INFO 2026-06-08 09:49:48 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr9:130,855,060
INFO 2026-06-08 09:49:48 MarkDuplicates Tracking 459437 as yet unmatched pairs. 10535 records in RAM.
INFO 2026-06-08 09:49:50 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr9:132,327,700
INFO 2026-06-08 09:49:50 MarkDuplicates Tracking 457628 as yet unmatched pairs. 8696 records in RAM.
INFO 2026-06-08 09:49:52 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr9:134,045,293
INFO 2026-06-08 09:49:52 MarkDuplicates Tracking 456067 as yet unmatched pairs. 7121 records in RAM.
INFO 2026-06-08 09:49:55 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr9:136,454,264
INFO 2026-06-08 09:49:55 MarkDuplicates Tracking 454857 as yet unmatched pairs. 5896 records in RAM.
INFO 2026-06-08 09:49:57 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr9:136,840,768
INFO 2026-06-08 09:49:57 MarkDuplicates Tracking 453314 as yet unmatched pairs. 4343 records in RAM.
INFO 2026-06-08 09:49:59 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr9:137,241,924
INFO 2026-06-08 09:49:59 MarkDuplicates Tracking 452613 as yet unmatched pairs. 3613 records in RAM.
INFO 2026-06-08 09:50:02 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr10:364,439
INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 449046 as yet unmatched pairs. 26870 records in RAM.
INFO 2026-06-08 09:50:04 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr10:5,800,609
INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 448149 as yet unmatched pairs. 25951 records in RAM.
INFO 2026-06-08 09:50:06 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr10:14,867,098
INFO 2026-06-08 09:50:06 MarkDuplicates Tracking 446591 as yet unmatched pairs. 24369 records in RAM.
INFO 2026-06-08 09:50:08 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr10:24,619,522
INFO 2026-06-08 09:50:08 MarkDuplicates Tracking 445246 as yet unmatched pairs. 23000 records in RAM.
INFO 2026-06-08 09:50:10 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr10:32,017,228
INFO 2026-06-08 09:50:10 MarkDuplicates Tracking 449582 as yet unmatched pairs. 27309 records in RAM.
INFO 2026-06-08 09:50:12 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr10:32,911,486
INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 443756 as yet unmatched pairs. 21476 records in RAM.
INFO 2026-06-08 09:50:15 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr10:45,826,635
INFO 2026-06-08 09:50:15 MarkDuplicates Tracking 441679 as yet unmatched pairs. 19378 records in RAM.
INFO 2026-06-08 09:50:17 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr10:58,335,154
INFO 2026-06-08 09:50:17 MarkDuplicates Tracking 440868 as yet unmatched pairs. 18546 records in RAM.
INFO 2026-06-08 09:50:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr10:68,977,669
INFO 2026-06-08 09:50:19 MarkDuplicates Tracking 440494 as yet unmatched pairs. 18147 records in RAM.
INFO 2026-06-08 09:50:21 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr10:73,245,966
INFO 2026-06-08 09:50:21 MarkDuplicates Tracking 438119 as yet unmatched pairs. 15756 records in RAM.
INFO 2026-06-08 09:50:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr10:77,811,927
INFO 2026-06-08 09:50:23 MarkDuplicates Tracking 436585 as yet unmatched pairs. 14202 records in RAM.
INFO 2026-06-08 09:50:25 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr10:86,500,293
INFO 2026-06-08 09:50:25 MarkDuplicates Tracking 435728 as yet unmatched pairs. 13325 records in RAM.
INFO 2026-06-08 09:50:27 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr10:92,613,587
INFO 2026-06-08 09:50:27 MarkDuplicates Tracking 434312 as yet unmatched pairs. 11884 records in RAM.
INFO 2026-06-08 09:50:30 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr10:96,527,245
INFO 2026-06-08 09:50:30 MarkDuplicates Tracking 435582 as yet unmatched pairs. 13136 records in RAM.
INFO 2026-06-08 09:50:31 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr10:100,360,860
INFO 2026-06-08 09:50:31 MarkDuplicates Tracking 432012 as yet unmatched pairs. 9546 records in RAM.
INFO 2026-06-08 09:50:34 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr10:102,399,391
INFO 2026-06-08 09:50:34 MarkDuplicates Tracking 430569 as yet unmatched pairs. 8089 records in RAM.
INFO 2026-06-08 09:50:36 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr10:109,880,859
INFO 2026-06-08 09:50:36 MarkDuplicates Tracking 428987 as yet unmatched pairs. 6483 records in RAM.
INFO 2026-06-08 09:50:38 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr10:114,835,537
INFO 2026-06-08 09:50:38 MarkDuplicates Tracking 427668 as yet unmatched pairs. 5145 records in RAM.
INFO 2026-06-08 09:50:40 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr10:121,911,043
INFO 2026-06-08 09:50:40 MarkDuplicates Tracking 426640 as yet unmatched pairs. 4098 records in RAM.
INFO 2026-06-08 09:50:42 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr10:122,598,793
INFO 2026-06-08 09:50:42 MarkDuplicates Tracking 427373 as yet unmatched pairs. 4825 records in RAM.
INFO 2026-06-08 09:50:44 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr10:124,787,651
INFO 2026-06-08 09:50:44 MarkDuplicates Tracking 424236 as yet unmatched pairs. 1673 records in RAM.
INFO 2026-06-08 09:50:46 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr10:132,405,806
INFO 2026-06-08 09:50:46 MarkDuplicates Tracking 423543 as yet unmatched pairs. 944 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr11:320,618
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 429559 as yet unmatched pairs. 60724 records in RAM.
INFO 2026-06-08 09:50:51 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:694,759
INFO 2026-06-08 09:50:51 MarkDuplicates Tracking 420299 as yet unmatched pairs. 51447 records in RAM.
INFO 2026-06-08 09:50:53 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr11:1,078,202
INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 427960 as yet unmatched pairs. 59091 records in RAM.
INFO 2026-06-08 09:50:56 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr11:1,088,048
INFO 2026-06-08 09:50:56 MarkDuplicates Tracking 421820 as yet unmatched pairs. 52936 records in RAM.
INFO 2026-06-08 09:50:58 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr11:1,238,877
INFO 2026-06-08 09:50:58 MarkDuplicates Tracking 418148 as yet unmatched pairs. 49233 records in RAM.
INFO 2026-06-08 09:51:00 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr11:1,243,967
INFO 2026-06-08 09:51:00 MarkDuplicates Tracking 422346 as yet unmatched pairs. 53425 records in RAM.
INFO 2026-06-08 09:51:02 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,630
INFO 2026-06-08 09:51:02 MarkDuplicates Tracking 416732 as yet unmatched pairs. 47807 records in RAM.
INFO 2026-06-08 09:51:04 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,971
INFO 2026-06-08 09:51:04 MarkDuplicates Tracking 416939 as yet unmatched pairs. 48012 records in RAM.
INFO 2026-06-08 09:51:05 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,880
INFO 2026-06-08 09:51:05 MarkDuplicates Tracking 414030 as yet unmatched pairs. 45100 records in RAM.
INFO 2026-06-08 09:51:08 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr11:1,556,569
INFO 2026-06-08 09:51:08 MarkDuplicates Tracking 411829 as yet unmatched pairs. 42893 records in RAM.
INFO 2026-06-08 09:51:10 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr11:4,070,076
INFO 2026-06-08 09:51:10 MarkDuplicates Tracking 410259 as yet unmatched pairs. 41298 records in RAM.
INFO 2026-06-08 09:51:12 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr11:8,726,118
INFO 2026-06-08 09:51:12 MarkDuplicates Tracking 409180 as yet unmatched pairs. 40201 records in RAM.
INFO 2026-06-08 09:51:14 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr11:11,964,640
INFO 2026-06-08 09:51:14 MarkDuplicates Tracking 407899 as yet unmatched pairs. 38894 records in RAM.
INFO 2026-06-08 09:51:16 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr11:18,347,862
INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 406329 as yet unmatched pairs. 37298 records in RAM.
INFO 2026-06-08 09:51:18 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr11:33,755,853
INFO 2026-06-08 09:51:18 MarkDuplicates Tracking 405171 as yet unmatched pairs. 36133 records in RAM.
INFO 2026-06-08 09:51:21 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr11:43,838,316
INFO 2026-06-08 09:51:21 MarkDuplicates Tracking 404602 as yet unmatched pairs. 35536 records in RAM.
INFO 2026-06-08 09:51:23 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr11:46,751,229
INFO 2026-06-08 09:51:23 MarkDuplicates Tracking 402644 as yet unmatched pairs. 33564 records in RAM.
INFO 2026-06-08 09:51:25 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr11:47,980,781
INFO 2026-06-08 09:51:25 MarkDuplicates Tracking 400931 as yet unmatched pairs. 31839 records in RAM.
INFO 2026-06-08 09:51:27 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr11:58,527,612
INFO 2026-06-08 09:51:27 MarkDuplicates Tracking 399518 as yet unmatched pairs. 30407 records in RAM.
INFO 2026-06-08 09:51:29 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr11:61,464,755
INFO 2026-06-08 09:51:29 MarkDuplicates Tracking 398051 as yet unmatched pairs. 28915 records in RAM.
INFO 2026-06-08 09:51:31 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr11:62,523,539
INFO 2026-06-08 09:51:31 MarkDuplicates Tracking 397751 as yet unmatched pairs. 28596 records in RAM.
INFO 2026-06-08 09:51:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr11:62,566,998
INFO 2026-06-08 09:51:34 MarkDuplicates Tracking 397984 as yet unmatched pairs. 28812 records in RAM.
INFO 2026-06-08 09:51:36 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr11:62,888,569
INFO 2026-06-08 09:51:36 MarkDuplicates Tracking 395329 as yet unmatched pairs. 26147 records in RAM.
INFO 2026-06-08 09:51:38 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr11:64,321,641
INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 392715 as yet unmatched pairs. 23524 records in RAM.
INFO 2026-06-08 09:51:41 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr11:65,130,018
INFO 2026-06-08 09:51:41 MarkDuplicates Tracking 391734 as yet unmatched pairs. 22532 records in RAM.
INFO 2026-06-08 09:51:43 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,820
INFO 2026-06-08 09:51:43 MarkDuplicates Tracking 392128 as yet unmatched pairs. 22861 records in RAM.
INFO 2026-06-08 09:51:45 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr11:66,334,050
INFO 2026-06-08 09:51:45 MarkDuplicates Tracking 388069 as yet unmatched pairs. 18786 records in RAM.
INFO 2026-06-08 09:51:47 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr11:67,398,758
INFO 2026-06-08 09:51:47 MarkDuplicates Tracking 386952 as yet unmatched pairs. 17650 records in RAM.
INFO 2026-06-08 09:51:49 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr11:68,389,925
INFO 2026-06-08 09:51:49 MarkDuplicates Tracking 384834 as yet unmatched pairs. 15516 records in RAM.
INFO 2026-06-08 09:51:52 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr11:71,435,699
INFO 2026-06-08 09:51:52 MarkDuplicates Tracking 383346 as yet unmatched pairs. 14017 records in RAM.
INFO 2026-06-08 09:51:54 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr11:73,677,948
INFO 2026-06-08 09:51:54 MarkDuplicates Tracking 382465 as yet unmatched pairs. 13121 records in RAM.
INFO 2026-06-08 09:51:56 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr11:77,114,386
INFO 2026-06-08 09:51:56 MarkDuplicates Tracking 380640 as yet unmatched pairs. 11272 records in RAM.
INFO 2026-06-08 09:51:59 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr11:88,294,324
INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 379509 as yet unmatched pairs. 10125 records in RAM.
INFO 2026-06-08 09:52:01 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr11:102,336,081
INFO 2026-06-08 09:52:01 MarkDuplicates Tracking 377849 as yet unmatched pairs. 8438 records in RAM.
INFO 2026-06-08 09:52:03 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr11:108,706,758
INFO 2026-06-08 09:52:03 MarkDuplicates Tracking 376813 as yet unmatched pairs. 7391 records in RAM.
INFO 2026-06-08 09:52:06 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr11:117,908,410
INFO 2026-06-08 09:52:06 MarkDuplicates Tracking 375376 as yet unmatched pairs. 5934 records in RAM.
INFO 2026-06-08 09:52:08 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr11:119,026,626
INFO 2026-06-08 09:52:08 MarkDuplicates Tracking 374195 as yet unmatched pairs. 4745 records in RAM.
INFO 2026-06-08 09:52:10 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr11:123,057,732
INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 376345 as yet unmatched pairs. 6883 records in RAM.
INFO 2026-06-08 09:52:12 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr11:126,263,880
INFO 2026-06-08 09:52:12 MarkDuplicates Tracking 371504 as yet unmatched pairs. 2038 records in RAM.
INFO 2026-06-08 09:52:14 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr11:130,208,574
INFO 2026-06-08 09:52:14 MarkDuplicates Tracking 370658 as yet unmatched pairs. 1175 records in RAM.
INFO 2026-06-08 09:52:17 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr12:2,800,052
INFO 2026-06-08 09:52:17 MarkDuplicates Tracking 368894 as yet unmatched pairs. 44959 records in RAM.
INFO 2026-06-08 09:52:19 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr12:6,327,501
INFO 2026-06-08 09:52:19 MarkDuplicates Tracking 367485 as yet unmatched pairs. 43536 records in RAM.
INFO 2026-06-08 09:52:21 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr12:6,601,357
INFO 2026-06-08 09:52:21 MarkDuplicates Tracking 366037 as yet unmatched pairs. 42074 records in RAM.
INFO 2026-06-08 09:52:23 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr12:7,081,242
INFO 2026-06-08 09:52:23 MarkDuplicates Tracking 364521 as yet unmatched pairs. 40547 records in RAM.
INFO 2026-06-08 09:52:25 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr12:11,650,024
INFO 2026-06-08 09:52:25 MarkDuplicates Tracking 364687 as yet unmatched pairs. 40694 records in RAM.
INFO 2026-06-08 09:52:28 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr12:14,436,225
INFO 2026-06-08 09:52:28 MarkDuplicates Tracking 362245 as yet unmatched pairs. 38239 records in RAM.
INFO 2026-06-08 09:52:30 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr12:25,107,033
INFO 2026-06-08 09:52:30 MarkDuplicates Tracking 360689 as yet unmatched pairs. 36679 records in RAM.
INFO 2026-06-08 09:52:32 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr12:32,878,039
INFO 2026-06-08 09:52:32 MarkDuplicates Tracking 360235 as yet unmatched pairs. 36204 records in RAM.
INFO 2026-06-08 09:52:34 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr12:47,966,118
INFO 2026-06-08 09:52:34 MarkDuplicates Tracking 358671 as yet unmatched pairs. 34633 records in RAM.
INFO 2026-06-08 09:52:36 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,829
INFO 2026-06-08 09:52:36 MarkDuplicates Tracking 357335 as yet unmatched pairs. 33281 records in RAM.
INFO 2026-06-08 09:52:38 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr12:49,330,171
INFO 2026-06-08 09:52:38 MarkDuplicates Tracking 355842 as yet unmatched pairs. 31781 records in RAM.
INFO 2026-06-08 09:52:40 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr12:51,118,706
INFO 2026-06-08 09:52:40 MarkDuplicates Tracking 354821 as yet unmatched pairs. 30746 records in RAM.
INFO 2026-06-08 09:52:42 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,823
INFO 2026-06-08 09:52:42 MarkDuplicates Tracking 362519 as yet unmatched pairs. 38430 records in RAM.
INFO 2026-06-08 09:52:45 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr12:53,268,368
INFO 2026-06-08 09:52:45 MarkDuplicates Tracking 351830 as yet unmatched pairs. 27733 records in RAM.
INFO 2026-06-08 09:52:47 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr12:54,281,408
INFO 2026-06-08 09:52:47 MarkDuplicates Tracking 356467 as yet unmatched pairs. 32362 records in RAM.
INFO 2026-06-08 09:52:49 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr12:55,828,509
INFO 2026-06-08 09:52:49 MarkDuplicates Tracking 349691 as yet unmatched pairs. 25572 records in RAM.
INFO 2026-06-08 09:52:52 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr12:56,174,727
INFO 2026-06-08 09:52:52 MarkDuplicates Tracking 348566 as yet unmatched pairs. 24425 records in RAM.
INFO 2026-06-08 09:52:54 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr12:56,645,299
INFO 2026-06-08 09:52:54 MarkDuplicates Tracking 350711 as yet unmatched pairs. 26562 records in RAM.
INFO 2026-06-08 09:52:56 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr12:57,102,828
INFO 2026-06-08 09:52:56 MarkDuplicates Tracking 347744 as yet unmatched pairs. 23592 records in RAM.
INFO 2026-06-08 09:52:59 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr12:57,476,810
INFO 2026-06-08 09:52:59 MarkDuplicates Tracking 344276 as yet unmatched pairs. 20107 records in RAM.
INFO 2026-06-08 09:53:01 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr12:62,965,424
INFO 2026-06-08 09:53:01 MarkDuplicates Tracking 342916 as yet unmatched pairs. 18733 records in RAM.
INFO 2026-06-08 09:53:03 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr12:69,353,187
INFO 2026-06-08 09:53:03 MarkDuplicates Tracking 343077 as yet unmatched pairs. 18862 records in RAM.
INFO 2026-06-08 09:53:05 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr12:76,030,601
INFO 2026-06-08 09:53:05 MarkDuplicates Tracking 341499 as yet unmatched pairs. 17265 records in RAM.
INFO 2026-06-08 09:53:07 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 2s. Last read position: chr12:92,811,341
INFO 2026-06-08 09:53:07 MarkDuplicates Tracking 339257 as yet unmatched pairs. 15000 records in RAM.
INFO 2026-06-08 09:53:10 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr12:98,706,527
INFO 2026-06-08 09:53:10 MarkDuplicates Tracking 338357 as yet unmatched pairs. 14082 records in RAM.
INFO 2026-06-08 09:53:12 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr12:104,321,130
INFO 2026-06-08 09:53:12 MarkDuplicates Tracking 337772 as yet unmatched pairs. 13484 records in RAM.
INFO 2026-06-08 09:53:14 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr12:109,983,416
INFO 2026-06-08 09:53:14 MarkDuplicates Tracking 335883 as yet unmatched pairs. 11579 records in RAM.
INFO 2026-06-08 09:53:16 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr12:112,134,758
INFO 2026-06-08 09:53:16 MarkDuplicates Tracking 334515 as yet unmatched pairs. 10188 records in RAM.
INFO 2026-06-08 09:53:18 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr12:113,942,351
INFO 2026-06-08 09:53:18 MarkDuplicates Tracking 333030 as yet unmatched pairs. 8699 records in RAM.
INFO 2026-06-08 09:53:20 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr12:120,162,004
INFO 2026-06-08 09:53:20 MarkDuplicates Tracking 331939 as yet unmatched pairs. 7570 records in RAM.
INFO 2026-06-08 09:53:22 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr12:121,318,515
INFO 2026-06-08 09:53:22 MarkDuplicates Tracking 330636 as yet unmatched pairs. 6245 records in RAM.
INFO 2026-06-08 09:53:25 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr12:122,856,033
INFO 2026-06-08 09:53:25 MarkDuplicates Tracking 328992 as yet unmatched pairs. 4591 records in RAM.
INFO 2026-06-08 09:53:27 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr12:124,363,769
INFO 2026-06-08 09:53:27 MarkDuplicates Tracking 327563 as yet unmatched pairs. 3152 records in RAM.
INFO 2026-06-08 09:53:29 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr12:132,104,549
INFO 2026-06-08 09:53:29 MarkDuplicates Tracking 325875 as yet unmatched pairs. 1441 records in RAM.
INFO 2026-06-08 09:53:31 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr13:19,993,357
INFO 2026-06-08 09:53:31 MarkDuplicates Tracking 325944 as yet unmatched pairs. 14630 records in RAM.
INFO 2026-06-08 09:53:33 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr13:25,555,009
INFO 2026-06-08 09:53:33 MarkDuplicates Tracking 323101 as yet unmatched pairs. 11768 records in RAM.
INFO 2026-06-08 09:53:35 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr13:32,178,394
INFO 2026-06-08 09:53:35 MarkDuplicates Tracking 321767 as yet unmatched pairs. 10427 records in RAM.
INFO 2026-06-08 09:53:37 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr13:44,434,614
INFO 2026-06-08 09:53:37 MarkDuplicates Tracking 321359 as yet unmatched pairs. 10005 records in RAM.
INFO 2026-06-08 09:53:39 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr13:49,549,487
INFO 2026-06-08 09:53:39 MarkDuplicates Tracking 319329 as yet unmatched pairs. 7965 records in RAM.
INFO 2026-06-08 09:53:42 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr13:71,479,271
INFO 2026-06-08 09:53:42 MarkDuplicates Tracking 318180 as yet unmatched pairs. 6805 records in RAM.
INFO 2026-06-08 09:53:44 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr13:79,366,086
INFO 2026-06-08 09:53:44 MarkDuplicates Tracking 317053 as yet unmatched pairs. 5668 records in RAM.
INFO 2026-06-08 09:53:46 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr13:100,515,566
INFO 2026-06-08 09:53:46 MarkDuplicates Tracking 316989 as yet unmatched pairs. 5577 records in RAM.
INFO 2026-06-08 09:53:48 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr13:110,210,154
INFO 2026-06-08 09:53:48 MarkDuplicates Tracking 315332 as yet unmatched pairs. 3902 records in RAM.
INFO 2026-06-08 09:53:50 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 2s. Last read position: chr13:112,826,790
INFO 2026-06-08 09:53:50 MarkDuplicates Tracking 312431 as yet unmatched pairs. 990 records in RAM.
INFO 2026-06-08 09:53:53 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr14:20,801,577
INFO 2026-06-08 09:53:53 MarkDuplicates Tracking 311723 as yet unmatched pairs. 31429 records in RAM.
INFO 2026-06-08 09:53:55 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr14:22,872,085
INFO 2026-06-08 09:53:55 MarkDuplicates Tracking 309726 as yet unmatched pairs. 29419 records in RAM.
INFO 2026-06-08 09:53:57 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr14:23,995,039
INFO 2026-06-08 09:53:57 MarkDuplicates Tracking 308513 as yet unmatched pairs. 28199 records in RAM.
INFO 2026-06-08 09:53:59 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr14:24,417,107
INFO 2026-06-08 09:53:59 MarkDuplicates Tracking 306727 as yet unmatched pairs. 26402 records in RAM.
INFO 2026-06-08 09:54:01 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr14:35,292,495
INFO 2026-06-08 09:54:01 MarkDuplicates Tracking 306565 as yet unmatched pairs. 26208 records in RAM.
INFO 2026-06-08 09:54:03 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr14:49,621,777
INFO 2026-06-08 09:54:03 MarkDuplicates Tracking 304712 as yet unmatched pairs. 24325 records in RAM.
INFO 2026-06-08 09:54:05 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr14:53,950,832
INFO 2026-06-08 09:54:05 MarkDuplicates Tracking 303171 as yet unmatched pairs. 22755 records in RAM.
INFO 2026-06-08 09:54:07 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr14:58,257,828
INFO 2026-06-08 09:54:07 MarkDuplicates Tracking 302901 as yet unmatched pairs. 22471 records in RAM.
INFO 2026-06-08 09:54:10 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr14:64,424,906
INFO 2026-06-08 09:54:10 MarkDuplicates Tracking 300596 as yet unmatched pairs. 20158 records in RAM.
INFO 2026-06-08 09:54:12 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr14:67,807,774
INFO 2026-06-08 09:54:12 MarkDuplicates Tracking 299209 as yet unmatched pairs. 18758 records in RAM.
INFO 2026-06-08 09:54:14 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr14:73,076,320
INFO 2026-06-08 09:54:14 MarkDuplicates Tracking 298331 as yet unmatched pairs. 17866 records in RAM.
INFO 2026-06-08 09:54:16 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr14:75,048,436
INFO 2026-06-08 09:54:16 MarkDuplicates Tracking 296462 as yet unmatched pairs. 15989 records in RAM.
INFO 2026-06-08 09:54:18 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr14:89,280,937
INFO 2026-06-08 09:54:18 MarkDuplicates Tracking 295143 as yet unmatched pairs. 14654 records in RAM.
INFO 2026-06-08 09:54:21 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr14:94,051,232
INFO 2026-06-08 09:54:21 MarkDuplicates Tracking 294169 as yet unmatched pairs. 13664 records in RAM.
INFO 2026-06-08 09:54:23 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr14:100,239,395
INFO 2026-06-08 09:54:23 MarkDuplicates Tracking 292457 as yet unmatched pairs. 11937 records in RAM.
INFO 2026-06-08 09:54:25 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr14:102,082,155
INFO 2026-06-08 09:54:25 MarkDuplicates Tracking 292211 as yet unmatched pairs. 11677 records in RAM.
INFO 2026-06-08 09:54:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr14:103,522,146
INFO 2026-06-08 09:54:27 MarkDuplicates Tracking 290566 as yet unmatched pairs. 10019 records in RAM.
INFO 2026-06-08 09:54:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr14:104,887,709
INFO 2026-06-08 09:54:29 MarkDuplicates Tracking 288948 as yet unmatched pairs. 8396 records in RAM.
INFO 2026-06-08 09:54:31 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 2s. Last read position: chr14:105,488,236
INFO 2026-06-08 09:54:31 MarkDuplicates Tracking 286647 as yet unmatched pairs. 6086 records in RAM.
INFO 2026-06-08 09:54:33 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,609
INFO 2026-06-08 09:54:33 MarkDuplicates Tracking 285416 as yet unmatched pairs. 4842 records in RAM.
INFO 2026-06-08 09:54:35 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,357
INFO 2026-06-08 09:54:35 MarkDuplicates Tracking 298446 as yet unmatched pairs. 17860 records in RAM.
INFO 2026-06-08 09:54:37 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,458
INFO 2026-06-08 09:54:37 MarkDuplicates Tracking 291003 as yet unmatched pairs. 10404 records in RAM.
INFO 2026-06-08 09:54:39 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,053
INFO 2026-06-08 09:54:39 MarkDuplicates Tracking 288417 as yet unmatched pairs. 7804 records in RAM.
INFO 2026-06-08 09:54:41 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr14:105,770,323
INFO 2026-06-08 09:54:41 MarkDuplicates Tracking 282261 as yet unmatched pairs. 1644 records in RAM.
INFO 2026-06-08 09:54:43 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr15:25,340,123
INFO 2026-06-08 09:54:43 MarkDuplicates Tracking 280607 as yet unmatched pairs. 21110 records in RAM.
INFO 2026-06-08 09:54:45 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 2s. Last read position: chr15:34,359,196
INFO 2026-06-08 09:54:45 MarkDuplicates Tracking 279355 as yet unmatched pairs. 19852 records in RAM.
INFO 2026-06-08 09:54:47 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr15:40,464,501
INFO 2026-06-08 09:54:47 MarkDuplicates Tracking 277957 as yet unmatched pairs. 18436 records in RAM.
INFO 2026-06-08 09:54:50 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 2s. Last read position: chr15:42,449,843
INFO 2026-06-08 09:54:50 MarkDuplicates Tracking 276596 as yet unmatched pairs. 17065 records in RAM.
INFO 2026-06-08 09:54:52 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 2s. Last read position: chr15:43,801,517
INFO 2026-06-08 09:54:52 MarkDuplicates Tracking 275540 as yet unmatched pairs. 16004 records in RAM.
INFO 2026-06-08 09:54:54 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr15:45,105,805
INFO 2026-06-08 09:54:54 MarkDuplicates Tracking 277483 as yet unmatched pairs. 17938 records in RAM.
INFO 2026-06-08 09:54:56 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 2s. Last read position: chr15:48,444,643
INFO 2026-06-08 09:54:56 MarkDuplicates Tracking 272618 as yet unmatched pairs. 13068 records in RAM.
INFO 2026-06-08 09:54:58 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 2s. Last read position: chr15:57,251,372
INFO 2026-06-08 09:54:58 MarkDuplicates Tracking 272435 as yet unmatched pairs. 12871 records in RAM.
INFO 2026-06-08 09:55:00 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr15:63,042,912
INFO 2026-06-08 09:55:00 MarkDuplicates Tracking 270671 as yet unmatched pairs. 11097 records in RAM.
INFO 2026-06-08 09:55:03 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr15:66,019,869
INFO 2026-06-08 09:55:03 MarkDuplicates Tracking 268427 as yet unmatched pairs. 8838 records in RAM.
INFO 2026-06-08 09:55:05 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr15:72,208,757
INFO 2026-06-08 09:55:05 MarkDuplicates Tracking 267812 as yet unmatched pairs. 8193 records in RAM.
INFO 2026-06-08 09:55:07 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr15:75,206,977
INFO 2026-06-08 09:55:07 MarkDuplicates Tracking 265861 as yet unmatched pairs. 6237 records in RAM.
INFO 2026-06-08 09:55:09 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 2s. Last read position: chr15:78,886,144
INFO 2026-06-08 09:55:09 MarkDuplicates Tracking 264729 as yet unmatched pairs. 5085 records in RAM.
INFO 2026-06-08 09:55:11 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr15:85,113,399
INFO 2026-06-08 09:55:11 MarkDuplicates Tracking 263069 as yet unmatched pairs. 3409 records in RAM.
INFO 2026-06-08 09:55:13 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr15:89,790,513
INFO 2026-06-08 09:55:13 MarkDuplicates Tracking 261836 as yet unmatched pairs. 2166 records in RAM.
INFO 2026-06-08 09:55:15 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr15:94,384,068
INFO 2026-06-08 09:55:15 MarkDuplicates Tracking 260635 as yet unmatched pairs. 960 records in RAM.
INFO 2026-06-08 09:55:18 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 2s. Last read position: chr16:547,663
INFO 2026-06-08 09:55:18 MarkDuplicates Tracking 259494 as yet unmatched pairs. 38348 records in RAM.
INFO 2026-06-08 09:55:20 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 2s. Last read position: chr16:1,501,710
INFO 2026-06-08 09:55:20 MarkDuplicates Tracking 257120 as yet unmatched pairs. 35962 records in RAM.
INFO 2026-06-08 09:55:22 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 2s. Last read position: chr16:2,104,614
INFO 2026-06-08 09:55:22 MarkDuplicates Tracking 255249 as yet unmatched pairs. 34074 records in RAM.
INFO 2026-06-08 09:55:24 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 2s. Last read position: chr16:2,763,884
INFO 2026-06-08 09:55:24 MarkDuplicates Tracking 255100 as yet unmatched pairs. 33913 records in RAM.
INFO 2026-06-08 09:55:26 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr16:3,290,231
INFO 2026-06-08 09:55:26 MarkDuplicates Tracking 252237 as yet unmatched pairs. 31044 records in RAM.
INFO 2026-06-08 09:55:28 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr16:4,874,348
INFO 2026-06-08 09:55:28 MarkDuplicates Tracking 250906 as yet unmatched pairs. 29709 records in RAM.
INFO 2026-06-08 09:55:31 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr16:13,920,267
INFO 2026-06-08 09:55:31 MarkDuplicates Tracking 249403 as yet unmatched pairs. 28190 records in RAM.
INFO 2026-06-08 09:55:33 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 2s. Last read position: chr16:15,130,234
INFO 2026-06-08 09:55:33 MarkDuplicates Tracking 248726 as yet unmatched pairs. 27508 records in RAM.
INFO 2026-06-08 09:55:34 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr16:16,331,218
INFO 2026-06-08 09:55:34 MarkDuplicates Tracking 247866 as yet unmatched pairs. 26644 records in RAM.
INFO 2026-06-08 09:55:36 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr16:18,499,928
INFO 2026-06-08 09:55:36 MarkDuplicates Tracking 247505 as yet unmatched pairs. 26281 records in RAM.
INFO 2026-06-08 09:55:38 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr16:20,924,045
INFO 2026-06-08 09:55:38 MarkDuplicates Tracking 246031 as yet unmatched pairs. 24800 records in RAM.
INFO 2026-06-08 09:55:40 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,469
INFO 2026-06-08 09:55:40 MarkDuplicates Tracking 246273 as yet unmatched pairs. 25034 records in RAM.
INFO 2026-06-08 09:55:41 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr16:22,523,886
INFO 2026-06-08 09:55:41 MarkDuplicates Tracking 245029 as yet unmatched pairs. 23789 records in RAM.
INFO 2026-06-08 09:55:43 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr16:24,564,797
INFO 2026-06-08 09:55:43 MarkDuplicates Tracking 244123 as yet unmatched pairs. 22881 records in RAM.
INFO 2026-06-08 09:55:46 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr16:28,606,144
INFO 2026-06-08 09:55:46 MarkDuplicates Tracking 242949 as yet unmatched pairs. 21699 records in RAM.
INFO 2026-06-08 09:55:47 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,945
INFO 2026-06-08 09:55:47 MarkDuplicates Tracking 242539 as yet unmatched pairs. 21287 records in RAM.
INFO 2026-06-08 09:55:49 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,779,554
INFO 2026-06-08 09:55:49 MarkDuplicates Tracking 241993 as yet unmatched pairs. 20738 records in RAM.
INFO 2026-06-08 09:55:51 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,014
INFO 2026-06-08 09:55:51 MarkDuplicates Tracking 241674 as yet unmatched pairs. 20413 records in RAM.
INFO 2026-06-08 09:55:53 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,285,447
INFO 2026-06-08 09:55:53 MarkDuplicates Tracking 239098 as yet unmatched pairs. 17830 records in RAM.
INFO 2026-06-08 09:55:55 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr16:30,773,990
INFO 2026-06-08 09:55:55 MarkDuplicates Tracking 237705 as yet unmatched pairs. 16432 records in RAM.
INFO 2026-06-08 09:55:57 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 2s. Last read position: chr16:31,191,433
INFO 2026-06-08 09:55:57 MarkDuplicates Tracking 237834 as yet unmatched pairs. 16556 records in RAM.
INFO 2026-06-08 09:55:59 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr16:53,208,647
INFO 2026-06-08 09:55:59 MarkDuplicates Tracking 235083 as yet unmatched pairs. 13800 records in RAM.
INFO 2026-06-08 09:56:01 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr16:57,650,335
INFO 2026-06-08 09:56:01 MarkDuplicates Tracking 234512 as yet unmatched pairs. 13223 records in RAM.
INFO 2026-06-08 09:56:03 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr16:66,941,541
INFO 2026-06-08 09:56:03 MarkDuplicates Tracking 232315 as yet unmatched pairs. 11015 records in RAM.
INFO 2026-06-08 09:56:05 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr16:67,952,382
INFO 2026-06-08 09:56:05 MarkDuplicates Tracking 230636 as yet unmatched pairs. 9321 records in RAM.
INFO 2026-06-08 09:56:08 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 2s. Last read position: chr16:69,711,099
INFO 2026-06-08 09:56:08 MarkDuplicates Tracking 229608 as yet unmatched pairs. 8286 records in RAM.
INFO 2026-06-08 09:56:10 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr16:71,920,741
INFO 2026-06-08 09:56:10 MarkDuplicates Tracking 228567 as yet unmatched pairs. 7235 records in RAM.
INFO 2026-06-08 09:56:12 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr16:78,109,793
INFO 2026-06-08 09:56:12 MarkDuplicates Tracking 226375 as yet unmatched pairs. 5032 records in RAM.
INFO 2026-06-08 09:56:14 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr16:86,532,138
INFO 2026-06-08 09:56:14 MarkDuplicates Tracking 224936 as yet unmatched pairs. 3580 records in RAM.
INFO 2026-06-08 09:56:16 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr16:88,809,696
INFO 2026-06-08 09:56:16 MarkDuplicates Tracking 224250 as yet unmatched pairs. 2888 records in RAM.
INFO 2026-06-08 09:56:18 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr16:89,935,527
INFO 2026-06-08 09:56:18 MarkDuplicates Tracking 221827 as yet unmatched pairs. 461 records in RAM.
INFO 2026-06-08 09:56:21 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,933
INFO 2026-06-08 09:56:21 MarkDuplicates Tracking 229337 as yet unmatched pairs. 72653 records in RAM.
INFO 2026-06-08 09:56:23 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr17:1,843,920
INFO 2026-06-08 09:56:23 MarkDuplicates Tracking 219031 as yet unmatched pairs. 62342 records in RAM.
INFO 2026-06-08 09:56:25 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr17:3,941,478
INFO 2026-06-08 09:56:25 MarkDuplicates Tracking 217880 as yet unmatched pairs. 61186 records in RAM.
INFO 2026-06-08 09:56:28 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr17:4,892,991
INFO 2026-06-08 09:56:28 MarkDuplicates Tracking 216555 as yet unmatched pairs. 59855 records in RAM.
INFO 2026-06-08 09:56:30 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:6,628,459
INFO 2026-06-08 09:56:30 MarkDuplicates Tracking 214301 as yet unmatched pairs. 57594 records in RAM.
INFO 2026-06-08 09:56:32 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr17:7,312,251
INFO 2026-06-08 09:56:32 MarkDuplicates Tracking 215113 as yet unmatched pairs. 58405 records in RAM.
INFO 2026-06-08 09:56:34 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr17:7,578,378
INFO 2026-06-08 09:56:34 MarkDuplicates Tracking 212141 as yet unmatched pairs. 55432 records in RAM.
INFO 2026-06-08 09:56:36 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr17:8,269,101
INFO 2026-06-08 09:56:36 MarkDuplicates Tracking 210108 as yet unmatched pairs. 53385 records in RAM.
INFO 2026-06-08 09:56:38 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr17:16,098,431
INFO 2026-06-08 09:56:38 MarkDuplicates Tracking 209490 as yet unmatched pairs. 52760 records in RAM.
INFO 2026-06-08 09:56:40 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:17,803,755
INFO 2026-06-08 09:56:40 MarkDuplicates Tracking 207581 as yet unmatched pairs. 50848 records in RAM.
INFO 2026-06-08 09:56:43 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr17:19,656,530
INFO 2026-06-08 09:56:43 MarkDuplicates Tracking 206261 as yet unmatched pairs. 49517 records in RAM.
INFO 2026-06-08 09:56:45 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr17:28,570,951
INFO 2026-06-08 09:56:45 MarkDuplicates Tracking 204698 as yet unmatched pairs. 47949 records in RAM.
INFO 2026-06-08 09:58:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 129s. Last read position: chr17:29,264,537
INFO 2026-06-08 09:58:55 MarkDuplicates Tracking 203668 as yet unmatched pairs. 46901 records in RAM.
INFO 2026-06-08 09:58:57 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr17:31,994,608
INFO 2026-06-08 09:58:57 MarkDuplicates Tracking 202530 as yet unmatched pairs. 45757 records in RAM.
INFO 2026-06-08 09:58:59 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr17:35,824,179
INFO 2026-06-08 09:58:59 MarkDuplicates Tracking 201733 as yet unmatched pairs. 44954 records in RAM.
INFO 2026-06-08 09:59:01 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr17:38,058,248
INFO 2026-06-08 09:59:01 MarkDuplicates Tracking 199564 as yet unmatched pairs. 42784 records in RAM.
INFO 2026-06-08 09:59:03 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr17:39,202,381
INFO 2026-06-08 09:59:03 MarkDuplicates Tracking 200455 as yet unmatched pairs. 43669 records in RAM.
INFO 2026-06-08 09:59:05 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr17:39,727,973
INFO 2026-06-08 09:59:05 MarkDuplicates Tracking 197124 as yet unmatched pairs. 40336 records in RAM.
INFO 2026-06-08 09:59:08 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr17:40,487,380
INFO 2026-06-08 09:59:08 MarkDuplicates Tracking 196160 as yet unmatched pairs. 39368 records in RAM.
INFO 2026-06-08 09:59:10 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr17:41,892,358
INFO 2026-06-08 09:59:10 MarkDuplicates Tracking 194556 as yet unmatched pairs. 37762 records in RAM.
INFO 2026-06-08 09:59:12 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr17:42,727,694
INFO 2026-06-08 09:59:12 MarkDuplicates Tracking 192543 as yet unmatched pairs. 35742 records in RAM.
INFO 2026-06-08 09:59:14 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr17:44,207,509
INFO 2026-06-08 09:59:14 MarkDuplicates Tracking 191243 as yet unmatched pairs. 34440 records in RAM.
INFO 2026-06-08 09:59:16 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chr17:45,450,633
INFO 2026-06-08 09:59:16 MarkDuplicates Tracking 189815 as yet unmatched pairs. 33002 records in RAM.
INFO 2026-06-08 09:59:18 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr17:47,652,874
INFO 2026-06-08 09:59:18 MarkDuplicates Tracking 189325 as yet unmatched pairs. 32507 records in RAM.
INFO 2026-06-08 09:59:20 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 2s. Last read position: chr17:48,936,201
INFO 2026-06-08 09:59:20 MarkDuplicates Tracking 187330 as yet unmatched pairs. 30501 records in RAM.
INFO 2026-06-08 09:59:23 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,531
INFO 2026-06-08 09:59:23 MarkDuplicates Tracking 192689 as yet unmatched pairs. 35857 records in RAM.
INFO 2026-06-08 09:59:25 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,649
INFO 2026-06-08 09:59:25 MarkDuplicates Tracking 190550 as yet unmatched pairs. 33717 records in RAM.
INFO 2026-06-08 09:59:27 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,333
INFO 2026-06-08 09:59:27 MarkDuplicates Tracking 194055 as yet unmatched pairs. 37217 records in RAM.
INFO 2026-06-08 09:59:29 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr17:50,658,349
INFO 2026-06-08 09:59:29 MarkDuplicates Tracking 180981 as yet unmatched pairs. 24135 records in RAM.
INFO 2026-06-08 09:59:31 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr17:57,111,874
INFO 2026-06-08 09:59:31 MarkDuplicates Tracking 179766 as yet unmatched pairs. 22913 records in RAM.
INFO 2026-06-08 09:59:34 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr17:59,644,372
INFO 2026-06-08 09:59:34 MarkDuplicates Tracking 182992 as yet unmatched pairs. 26134 records in RAM.
INFO 2026-06-08 09:59:36 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chr17:59,685,054
INFO 2026-06-08 09:59:36 MarkDuplicates Tracking 179660 as yet unmatched pairs. 22798 records in RAM.
INFO 2026-06-08 09:59:38 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr17:63,583,525
INFO 2026-06-08 09:59:38 MarkDuplicates Tracking 175836 as yet unmatched pairs. 18969 records in RAM.
INFO 2026-06-08 09:59:40 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr17:64,824,625
INFO 2026-06-08 09:59:40 MarkDuplicates Tracking 174258 as yet unmatched pairs. 17388 records in RAM.
INFO 2026-06-08 09:59:42 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr17:68,433,560
INFO 2026-06-08 09:59:42 MarkDuplicates Tracking 172978 as yet unmatched pairs. 16100 records in RAM.
INFO 2026-06-08 09:59:44 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chr17:74,839,003
INFO 2026-06-08 09:59:44 MarkDuplicates Tracking 171371 as yet unmatched pairs. 14482 records in RAM.
INFO 2026-06-08 09:59:46 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr17:75,571,953
INFO 2026-06-08 09:59:46 MarkDuplicates Tracking 171201 as yet unmatched pairs. 14309 records in RAM.
INFO 2026-06-08 09:59:49 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chr17:75,751,091
INFO 2026-06-08 09:59:49 MarkDuplicates Tracking 168892 as yet unmatched pairs. 11996 records in RAM.
INFO 2026-06-08 09:59:51 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr17:76,292,351
INFO 2026-06-08 09:59:51 MarkDuplicates Tracking 166620 as yet unmatched pairs. 9717 records in RAM.
INFO 2026-06-08 09:59:53 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr17:78,171,824
INFO 2026-06-08 09:59:53 MarkDuplicates Tracking 167830 as yet unmatched pairs. 10915 records in RAM.
INFO 2026-06-08 09:59:55 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 2s. Last read position: chr17:80,101,616
INFO 2026-06-08 09:59:55 MarkDuplicates Tracking 163605 as yet unmatched pairs. 6681 records in RAM.
INFO 2026-06-08 09:59:57 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr17:81,277,061
INFO 2026-06-08 09:59:57 MarkDuplicates Tracking 162373 as yet unmatched pairs. 5446 records in RAM.
INFO 2026-06-08 09:59:59 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 2s. Last read position: chr17:81,845,159
INFO 2026-06-08 09:59:59 MarkDuplicates Tracking 163331 as yet unmatched pairs. 6395 records in RAM.
INFO 2026-06-08 10:00:02 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr17:82,079,516
INFO 2026-06-08 10:00:02 MarkDuplicates Tracking 159197 as yet unmatched pairs. 2253 records in RAM.
INFO 2026-06-08 10:00:04 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chr17:82,926,438
INFO 2026-06-08 10:00:04 MarkDuplicates Tracking 157250 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 10:00:06 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr18:12,028,900
INFO 2026-06-08 10:00:06 MarkDuplicates Tracking 156038 as yet unmatched pairs. 6191 records in RAM.
INFO 2026-06-08 10:00:08 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr18:31,008,483
INFO 2026-06-08 10:00:08 MarkDuplicates Tracking 154406 as yet unmatched pairs. 4548 records in RAM.
INFO 2026-06-08 10:00:10 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr18:46,089,871
INFO 2026-06-08 10:00:10 MarkDuplicates Tracking 154677 as yet unmatched pairs. 4814 records in RAM.
INFO 2026-06-08 10:00:12 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr18:57,620,594
INFO 2026-06-08 10:00:12 MarkDuplicates Tracking 151914 as yet unmatched pairs. 2046 records in RAM.
INFO 2026-06-08 10:00:14 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr18:75,202,304
INFO 2026-06-08 10:00:14 MarkDuplicates Tracking 150652 as yet unmatched pairs. 779 records in RAM.
INFO 2026-06-08 10:00:17 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 3s. Last read position: chr19:757,559
INFO 2026-06-08 10:00:17 MarkDuplicates Tracking 150197 as yet unmatched pairs. 75104 records in RAM.
INFO 2026-06-08 10:00:20 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 2s. Last read position: chr19:1,090,116
INFO 2026-06-08 10:00:20 MarkDuplicates Tracking 147564 as yet unmatched pairs. 72467 records in RAM.
INFO 2026-06-08 10:00:22 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,127
INFO 2026-06-08 10:00:22 MarkDuplicates Tracking 148526 as yet unmatched pairs. 73426 records in RAM.
INFO 2026-06-08 10:00:24 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr19:2,129,079
INFO 2026-06-08 10:00:24 MarkDuplicates Tracking 144110 as yet unmatched pairs. 69009 records in RAM.
INFO 2026-06-08 10:00:26 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chr19:3,192,525
INFO 2026-06-08 10:00:26 MarkDuplicates Tracking 142312 as yet unmatched pairs. 67204 records in RAM.
INFO 2026-06-08 10:00:28 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr19:4,324,081
INFO 2026-06-08 10:00:28 MarkDuplicates Tracking 140483 as yet unmatched pairs. 65374 records in RAM.
INFO 2026-06-08 10:00:31 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chr19:5,654,414
INFO 2026-06-08 10:00:31 MarkDuplicates Tracking 138732 as yet unmatched pairs. 63617 records in RAM.
INFO 2026-06-08 10:00:33 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr19:6,415,087
INFO 2026-06-08 10:00:33 MarkDuplicates Tracking 137054 as yet unmatched pairs. 61936 records in RAM.
INFO 2026-06-08 10:00:35 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr19:7,627,362
INFO 2026-06-08 10:00:35 MarkDuplicates Tracking 135443 as yet unmatched pairs. 60325 records in RAM.
INFO 2026-06-08 10:00:37 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chr19:9,857,419
INFO 2026-06-08 10:00:37 MarkDuplicates Tracking 133675 as yet unmatched pairs. 58552 records in RAM.
INFO 2026-06-08 10:00:39 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr19:10,627,772
INFO 2026-06-08 10:00:39 MarkDuplicates Tracking 132275 as yet unmatched pairs. 57152 records in RAM.
INFO 2026-06-08 10:00:42 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr19:11,120,287
INFO 2026-06-08 10:00:42 MarkDuplicates Tracking 130958 as yet unmatched pairs. 55829 records in RAM.
INFO 2026-06-08 10:00:44 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chr19:12,661,335
INFO 2026-06-08 10:00:44 MarkDuplicates Tracking 129423 as yet unmatched pairs. 54291 records in RAM.
INFO 2026-06-08 10:00:46 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr19:13,081,813
INFO 2026-06-08 10:00:46 MarkDuplicates Tracking 128431 as yet unmatched pairs. 53298 records in RAM.
INFO 2026-06-08 10:00:48 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 2s. Last read position: chr19:14,402,811
INFO 2026-06-08 10:00:48 MarkDuplicates Tracking 126631 as yet unmatched pairs. 51495 records in RAM.
INFO 2026-06-08 10:00:50 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr19:15,184,971
INFO 2026-06-08 10:00:50 MarkDuplicates Tracking 125082 as yet unmatched pairs. 49942 records in RAM.
INFO 2026-06-08 10:00:53 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr19:16,081,847
INFO 2026-06-08 10:00:53 MarkDuplicates Tracking 123462 as yet unmatched pairs. 48320 records in RAM.
INFO 2026-06-08 10:00:55 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chr19:17,338,147
INFO 2026-06-08 10:00:55 MarkDuplicates Tracking 121363 as yet unmatched pairs. 46215 records in RAM.
INFO 2026-06-08 10:00:57 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 2s. Last read position: chr19:18,280,974
INFO 2026-06-08 10:00:57 MarkDuplicates Tracking 119721 as yet unmatched pairs. 44571 records in RAM.
INFO 2026-06-08 10:00:59 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr19:19,119,936
INFO 2026-06-08 10:00:59 MarkDuplicates Tracking 118098 as yet unmatched pairs. 42945 records in RAM.
INFO 2026-06-08 10:01:01 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr19:32,640,319
INFO 2026-06-08 10:01:01 MarkDuplicates Tracking 116836 as yet unmatched pairs. 41680 records in RAM.
INFO 2026-06-08 10:01:03 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr19:35,122,771
INFO 2026-06-08 10:01:03 MarkDuplicates Tracking 121187 as yet unmatched pairs. 46026 records in RAM.
INFO 2026-06-08 10:01:05 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr19:35,767,740
INFO 2026-06-08 10:01:05 MarkDuplicates Tracking 113365 as yet unmatched pairs. 38202 records in RAM.
INFO 2026-06-08 10:01:08 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 2s. Last read position: chr19:38,620,335
INFO 2026-06-08 10:01:08 MarkDuplicates Tracking 114896 as yet unmatched pairs. 39723 records in RAM.
INFO 2026-06-08 10:01:10 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 2s. Last read position: chr19:38,838,526
INFO 2026-06-08 10:01:10 MarkDuplicates Tracking 111378 as yet unmatched pairs. 36205 records in RAM.
INFO 2026-06-08 10:01:12 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr19:39,825,798
INFO 2026-06-08 10:01:12 MarkDuplicates Tracking 109035 as yet unmatched pairs. 33861 records in RAM.
INFO 2026-06-08 10:01:14 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr19:39,876,805
INFO 2026-06-08 10:01:14 MarkDuplicates Tracking 107639 as yet unmatched pairs. 32453 records in RAM.
INFO 2026-06-08 10:01:16 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,022
INFO 2026-06-08 10:01:16 MarkDuplicates Tracking 118215 as yet unmatched pairs. 43025 records in RAM.
INFO 2026-06-08 10:01:18 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr19:39,891,905
INFO 2026-06-08 10:01:18 MarkDuplicates Tracking 116981 as yet unmatched pairs. 41790 records in RAM.
INFO 2026-06-08 10:01:20 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 1s. Last read position: chr19:39,901,993
INFO 2026-06-08 10:01:20 MarkDuplicates Tracking 107594 as yet unmatched pairs. 32398 records in RAM.
INFO 2026-06-08 10:01:22 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 2s. Last read position: chr19:39,918,523
INFO 2026-06-08 10:01:22 MarkDuplicates Tracking 106402 as yet unmatched pairs. 31203 records in RAM.
INFO 2026-06-08 10:01:24 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 1s. Last read position: chr19:40,369,911
INFO 2026-06-08 10:01:24 MarkDuplicates Tracking 101613 as yet unmatched pairs. 26407 records in RAM.
INFO 2026-06-08 10:01:26 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr19:41,674,679
INFO 2026-06-08 10:01:26 MarkDuplicates Tracking 102137 as yet unmatched pairs. 26929 records in RAM.
INFO 2026-06-08 10:01:28 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 2s. Last read position: chr19:41,715,216
INFO 2026-06-08 10:01:28 MarkDuplicates Tracking 110611 as yet unmatched pairs. 35403 records in RAM.
INFO 2026-06-08 10:01:30 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,924
INFO 2026-06-08 10:01:30 MarkDuplicates Tracking 100986 as yet unmatched pairs. 25777 records in RAM.
INFO 2026-06-08 10:01:33 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 2s. Last read position: chr19:41,892,020
INFO 2026-06-08 10:01:33 MarkDuplicates Tracking 96632 as yet unmatched pairs. 21421 records in RAM.
INFO 2026-06-08 10:01:34 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 1s. Last read position: chr19:42,344,444
INFO 2026-06-08 10:01:34 MarkDuplicates Tracking 94718 as yet unmatched pairs. 19504 records in RAM.
INFO 2026-06-08 10:01:37 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 2s. Last read position: chr19:44,759,484
INFO 2026-06-08 10:01:37 MarkDuplicates Tracking 93591 as yet unmatched pairs. 18372 records in RAM.
INFO 2026-06-08 10:01:39 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 2s. Last read position: chr19:45,634,383
INFO 2026-06-08 10:01:39 MarkDuplicates Tracking 91538 as yet unmatched pairs. 16316 records in RAM.
INFO 2026-06-08 10:01:41 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 2s. Last read position: chr19:46,921,757
INFO 2026-06-08 10:01:41 MarkDuplicates Tracking 89990 as yet unmatched pairs. 14756 records in RAM.
INFO 2026-06-08 10:01:43 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 2s. Last read position: chr19:48,470,389
INFO 2026-06-08 10:01:43 MarkDuplicates Tracking 88385 as yet unmatched pairs. 13146 records in RAM.
INFO 2026-06-08 10:01:45 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 2s. Last read position: chr19:49,107,924
INFO 2026-06-08 10:01:45 MarkDuplicates Tracking 86728 as yet unmatched pairs. 11483 records in RAM.
INFO 2026-06-08 10:01:47 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 2s. Last read position: chr19:49,599,369
INFO 2026-06-08 10:01:47 MarkDuplicates Tracking 85627 as yet unmatched pairs. 10377 records in RAM.
INFO 2026-06-08 10:01:50 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:23:30s. Time for last 1,000,000: 2s. Last read position: chr19:50,016,073
INFO 2026-06-08 10:01:50 MarkDuplicates Tracking 83702 as yet unmatched pairs. 8452 records in RAM.
INFO 2026-06-08 10:01:52 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr19:51,125,800
INFO 2026-06-08 10:01:52 MarkDuplicates Tracking 81650 as yet unmatched pairs. 6396 records in RAM.
INFO 2026-06-08 10:01:54 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chr19:54,188,253
INFO 2026-06-08 10:01:54 MarkDuplicates Tracking 80675 as yet unmatched pairs. 5411 records in RAM.
INFO 2026-06-08 10:01:56 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 2s. Last read position: chr19:55,246,986
INFO 2026-06-08 10:01:56 MarkDuplicates Tracking 78993 as yet unmatched pairs. 3723 records in RAM.
INFO 2026-06-08 10:01:58 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 1s. Last read position: chr19:57,284,624
INFO 2026-06-08 10:01:58 MarkDuplicates Tracking 77362 as yet unmatched pairs. 2087 records in RAM.
INFO 2026-06-08 10:02:00 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 2s. Last read position: chr19:58,549,744
INFO 2026-06-08 10:02:00 MarkDuplicates Tracking 78129 as yet unmatched pairs. 2853 records in RAM.
INFO 2026-06-08 10:02:02 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 2s. Last read position: chr20:2,835,414
INFO 2026-06-08 10:02:02 MarkDuplicates Tracking 74166 as yet unmatched pairs. 19992 records in RAM.
INFO 2026-06-08 10:02:05 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 2s. Last read position: chr20:5,292,399
INFO 2026-06-08 10:02:05 MarkDuplicates Tracking 72369 as yet unmatched pairs. 18194 records in RAM.
INFO 2026-06-08 10:02:07 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 2s. Last read position: chr20:16,505,778
INFO 2026-06-08 10:02:07 MarkDuplicates Tracking 71141 as yet unmatched pairs. 16959 records in RAM.
INFO 2026-06-08 10:02:09 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 1s. Last read position: chr20:19,975,563
INFO 2026-06-08 10:02:09 MarkDuplicates Tracking 70135 as yet unmatched pairs. 15951 records in RAM.
INFO 2026-06-08 10:02:11 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 2s. Last read position: chr20:26,208,396
INFO 2026-06-08 10:02:11 MarkDuplicates Tracking 68294 as yet unmatched pairs. 14108 records in RAM.
INFO 2026-06-08 10:02:13 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 2s. Last read position: chr20:34,105,536
INFO 2026-06-08 10:02:13 MarkDuplicates Tracking 66921 as yet unmatched pairs. 12732 records in RAM.
INFO 2026-06-08 10:02:15 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 2s. Last read position: chr20:35,632,804
INFO 2026-06-08 10:02:15 MarkDuplicates Tracking 65847 as yet unmatched pairs. 11657 records in RAM.
INFO 2026-06-08 10:02:18 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 2s. Last read position: chr20:37,518,968
INFO 2026-06-08 10:02:18 MarkDuplicates Tracking 64807 as yet unmatched pairs. 10615 records in RAM.
INFO 2026-06-08 10:02:20 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:24:00s. Time for last 1,000,000: 2s. Last read position: chr20:44,419,748
INFO 2026-06-08 10:02:20 MarkDuplicates Tracking 63362 as yet unmatched pairs. 9164 records in RAM.
INFO 2026-06-08 10:02:22 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 2s. Last read position: chr20:45,947,295
INFO 2026-06-08 10:02:22 MarkDuplicates Tracking 61419 as yet unmatched pairs. 7219 records in RAM.
INFO 2026-06-08 10:02:24 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 2s. Last read position: chr20:49,905,675
INFO 2026-06-08 10:02:24 MarkDuplicates Tracking 60181 as yet unmatched pairs. 5979 records in RAM.
INFO 2026-06-08 10:02:26 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chr20:57,610,653
INFO 2026-06-08 10:02:26 MarkDuplicates Tracking 58795 as yet unmatched pairs. 4592 records in RAM.
INFO 2026-06-08 10:02:28 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chr20:62,303,575
INFO 2026-06-08 10:02:28 MarkDuplicates Tracking 57774 as yet unmatched pairs. 3565 records in RAM.
INFO 2026-06-08 10:02:30 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 2s. Last read position: chr20:63,541,148
INFO 2026-06-08 10:02:30 MarkDuplicates Tracking 55696 as yet unmatched pairs. 1482 records in RAM.
INFO 2026-06-08 10:02:33 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 2s. Last read position: chr21:6,487,107
INFO 2026-06-08 10:02:33 MarkDuplicates Tracking 54377 as yet unmatched pairs. 11980 records in RAM.
INFO 2026-06-08 10:02:34 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,394,910
INFO 2026-06-08 10:02:34 MarkDuplicates Tracking 53253 as yet unmatched pairs. 10847 records in RAM.
INFO 2026-06-08 10:02:36 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,190
INFO 2026-06-08 10:02:36 MarkDuplicates Tracking 52378 as yet unmatched pairs. 9968 records in RAM.
INFO 2026-06-08 10:02:38 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 1s. Last read position: chr21:29,067,038
INFO 2026-06-08 10:02:38 MarkDuplicates Tracking 51731 as yet unmatched pairs. 9314 records in RAM.
INFO 2026-06-08 10:02:40 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:20s. Time for last 1,000,000: 2s. Last read position: chr21:33,797,570
INFO 2026-06-08 10:02:40 MarkDuplicates Tracking 49863 as yet unmatched pairs. 7445 records in RAM.
INFO 2026-06-08 10:02:42 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:22s. Time for last 1,000,000: 2s. Last read position: chr21:39,183,282
INFO 2026-06-08 10:02:42 MarkDuplicates Tracking 48435 as yet unmatched pairs. 6015 records in RAM.
INFO 2026-06-08 10:02:44 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 1s. Last read position: chr21:41,991,384
INFO 2026-06-08 10:02:44 MarkDuplicates Tracking 47092 as yet unmatched pairs. 4665 records in RAM.
INFO 2026-06-08 10:02:46 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 2s. Last read position: chr21:44,228,230
INFO 2026-06-08 10:02:46 MarkDuplicates Tracking 45515 as yet unmatched pairs. 3083 records in RAM.
INFO 2026-06-08 10:02:48 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 2s. Last read position: chr21:45,999,158
INFO 2026-06-08 10:02:48 MarkDuplicates Tracking 44648 as yet unmatched pairs. 2209 records in RAM.
INFO 2026-06-08 10:02:50 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:24:31s. Time for last 1,000,000: 2s. Last read position: chr22:17,819,033
INFO 2026-06-08 10:02:50 MarkDuplicates Tracking 42443 as yet unmatched pairs. 17494 records in RAM.
INFO 2026-06-08 10:02:53 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:24:33s. Time for last 1,000,000: 2s. Last read position: chr22:21,642,883
INFO 2026-06-08 10:02:53 MarkDuplicates Tracking 41057 as yet unmatched pairs. 16104 records in RAM.
INFO 2026-06-08 10:02:55 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 1s. Last read position: chr22:23,836,897
INFO 2026-06-08 10:02:55 MarkDuplicates Tracking 39458 as yet unmatched pairs. 14499 records in RAM.
INFO 2026-06-08 10:02:57 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 2s. Last read position: chr22:28,987,145
INFO 2026-06-08 10:02:57 MarkDuplicates Tracking 37936 as yet unmatched pairs. 12974 records in RAM.
INFO 2026-06-08 10:02:59 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 2s. Last read position: chr22:30,335,652
INFO 2026-06-08 10:02:59 MarkDuplicates Tracking 36549 as yet unmatched pairs. 11584 records in RAM.
INFO 2026-06-08 10:03:01 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chr22:35,421,327
INFO 2026-06-08 10:03:01 MarkDuplicates Tracking 35148 as yet unmatched pairs. 10180 records in RAM.
INFO 2026-06-08 10:03:03 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 2s. Last read position: chr22:37,024,576
INFO 2026-06-08 10:03:03 MarkDuplicates Tracking 34397 as yet unmatched pairs. 9429 records in RAM.
INFO 2026-06-08 10:03:05 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 1s. Last read position: chr22:38,487,997
INFO 2026-06-08 10:03:05 MarkDuplicates Tracking 32536 as yet unmatched pairs. 7568 records in RAM.
INFO 2026-06-08 10:03:07 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:24:48s. Time for last 1,000,000: 2s. Last read position: chr22:40,850,838
INFO 2026-06-08 10:03:07 MarkDuplicates Tracking 31037 as yet unmatched pairs. 6068 records in RAM.
INFO 2026-06-08 10:03:10 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 2s. Last read position: chr22:42,592,021
INFO 2026-06-08 10:03:10 MarkDuplicates Tracking 29033 as yet unmatched pairs. 4063 records in RAM.
INFO 2026-06-08 10:03:12 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 2s. Last read position: chr22:49,925,447
INFO 2026-06-08 10:03:12 MarkDuplicates Tracking 27412 as yet unmatched pairs. 2437 records in RAM.
INFO 2026-06-08 10:03:14 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chr22:50,579,453
INFO 2026-06-08 10:03:14 MarkDuplicates Tracking 25598 as yet unmatched pairs. 620 records in RAM.
INFO 2026-06-08 10:03:16 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chrX:10,117,301
INFO 2026-06-08 10:03:16 MarkDuplicates Tracking 23875 as yet unmatched pairs. 19516 records in RAM.
INFO 2026-06-08 10:03:18 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:24:58s. Time for last 1,000,000: 2s. Last read position: chrX:20,130,539
INFO 2026-06-08 10:03:18 MarkDuplicates Tracking 23885 as yet unmatched pairs. 19524 records in RAM.
INFO 2026-06-08 10:03:21 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:25:01s. Time for last 1,000,000: 2s. Last read position: chrX:40,063,711
INFO 2026-06-08 10:03:21 MarkDuplicates Tracking 21577 as yet unmatched pairs. 17216 records in RAM.
INFO 2026-06-08 10:03:23 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:25:03s. Time for last 1,000,000: 1s. Last read position: chrX:46,651,317
INFO 2026-06-08 10:03:23 MarkDuplicates Tracking 19903 as yet unmatched pairs. 15542 records in RAM.
INFO 2026-06-08 10:03:25 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 2s. Last read position: chrX:48,822,980
INFO 2026-06-08 10:03:25 MarkDuplicates Tracking 18568 as yet unmatched pairs. 14207 records in RAM.
INFO 2026-06-08 10:03:27 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:25:07s. Time for last 1,000,000: 2s. Last read position: chrX:53,195,310
INFO 2026-06-08 10:03:27 MarkDuplicates Tracking 17333 as yet unmatched pairs. 12972 records in RAM.
INFO 2026-06-08 10:03:29 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:25:09s. Time for last 1,000,000: 2s. Last read position: chrX:54,542,999
INFO 2026-06-08 10:03:29 MarkDuplicates Tracking 15749 as yet unmatched pairs. 11387 records in RAM.
INFO 2026-06-08 10:03:31 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:25:11s. Time for last 1,000,000: 2s. Last read position: chrX:71,107,837
INFO 2026-06-08 10:03:31 MarkDuplicates Tracking 14548 as yet unmatched pairs. 10186 records in RAM.
INFO 2026-06-08 10:03:33 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:25:13s. Time for last 1,000,000: 1s. Last read position: chrX:72,667,429
INFO 2026-06-08 10:03:33 MarkDuplicates Tracking 13187 as yet unmatched pairs. 8824 records in RAM.
INFO 2026-06-08 10:03:36 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:25:16s. Time for last 1,000,000: 2s. Last read position: chrX:85,978,832
INFO 2026-06-08 10:03:36 MarkDuplicates Tracking 11977 as yet unmatched pairs. 7613 records in RAM.
INFO 2026-06-08 10:03:38 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:25:18s. Time for last 1,000,000: 1s. Last read position: chrX:110,004,040
INFO 2026-06-08 10:03:38 MarkDuplicates Tracking 10848 as yet unmatched pairs. 6483 records in RAM.
INFO 2026-06-08 10:03:40 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:25:20s. Time for last 1,000,000: 2s. Last read position: chrX:124,031,023
INFO 2026-06-08 10:03:40 MarkDuplicates Tracking 9546 as yet unmatched pairs. 5176 records in RAM.
INFO 2026-06-08 10:03:42 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 2s. Last read position: chrX:149,490,321
INFO 2026-06-08 10:03:42 MarkDuplicates Tracking 8612 as yet unmatched pairs. 4240 records in RAM.
INFO 2026-06-08 10:03:44 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:25:24s. Time for last 1,000,000: 1s. Last read position: chrX:154,016,576
INFO 2026-06-08 10:03:44 MarkDuplicates Tracking 7247 as yet unmatched pairs. 2872 records in RAM.
INFO 2026-06-08 10:03:46 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:25:26s. Time for last 1,000,000: 2s. Last read position: chrX:154,435,815
INFO 2026-06-08 10:03:46 MarkDuplicates Tracking 5479 as yet unmatched pairs. 1103 records in RAM.
INFO 2026-06-08 10:03:48 MarkDuplicates Read 656,000,000 records. Elapsed time: 00:25:28s. Time for last 1,000,000: 1s. Last read position: chrM:13,725
INFO 2026-06-08 10:03:48 MarkDuplicates Tracking 3998 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 10:03:50 MarkDuplicates Read 657,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,135
INFO 2026-06-08 10:03:50 MarkDuplicates Tracking 2989 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 10:03:51 MarkDuplicates Read 658,000,000 records. Elapsed time: 00:25:31s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,336
INFO 2026-06-08 10:03:51 MarkDuplicates Tracking 746 as yet unmatched pairs. 732 records in RAM.
INFO 2026-06-08 10:03:52 MarkDuplicates Read 658758390 records. 0 pairs never matched.
INFO 2026-06-08 10:04:36 MarkDuplicates After buildSortedReadEndLists freeMemory: 58422568512; totalMemory: 83449872384; maxMemory: 127137742848
INFO 2026-06-08 10:04:36 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 10:04:41 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 10:05:14 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 10:05:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,627
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,610
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1248
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,443
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,760
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 10:05:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,409
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,840
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,853
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,501
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,321
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,494
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1621
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,566
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 10:05:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,479
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,717
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,209
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,628
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 1521
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,078
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,053
INFO 2026-06-08 10:05:17 OpticalDuplicateFinder Large duplicate set. size = 4528
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,093
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,830
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,760
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,958
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,025
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,639
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder Large duplicate set. size = 1879
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,575
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 10:05:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,836
INFO 2026-06-08 10:05:42 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 10:05:42 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 10:07:04 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 10:07:15 MarkDuplicates After generateDuplicateIndexes freeMemory: 40287010600; totalMemory: 57512296448; maxMemory: 127137742848
INFO 2026-06-08 10:07:15 MarkDuplicates Marking 258415421 records as duplicates.
INFO 2026-06-08 10:07:15 MarkDuplicates Found 21992106 optical duplicate clusters.
INFO 2026-06-08 10:07:15 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 10:07:33 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:27,283,338
INFO 2026-06-08 10:07:50 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:66,367,968
INFO 2026-06-08 10:08:07 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:149,851,138
INFO 2026-06-08 10:08:24 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 17s. Last read position: chr1:160,323,444
INFO 2026-06-08 10:08:42 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 17s. Last read position: chr1:206,931,671
INFO 2026-06-08 10:08:59 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr2:10,440,762
INFO 2026-06-08 10:09:17 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:47,375,239
INFO 2026-06-08 10:09:34 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 17s. Last read position: chr2:101,005,972
INFO 2026-06-08 10:09:51 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 17s. Last read position: chr2:178,451,017
INFO 2026-06-08 10:10:09 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 17s. Last read position: chr2:230,446,826
INFO 2026-06-08 10:10:26 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:10s. Time for last 10,000,000: 17s. Last read position: chr3:42,908,818
INFO 2026-06-08 10:10:43 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 17s. Last read position: chr3:101,686,488
INFO 2026-06-08 10:11:01 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 17s. Last read position: chr3:189,995,366
INFO 2026-06-08 10:11:18 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 17s. Last read position: chr4:56,999,674
INFO 2026-06-08 10:11:36 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 17s. Last read position: chr4:186,611,691
INFO 2026-06-08 10:11:53 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 17s. Last read position: chr5:91,287,274
INFO 2026-06-08 10:12:10 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 17s. Last read position: chr5:150,125,506
INFO 2026-06-08 10:12:27 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:12s. Time for last 10,000,000: 17s. Last read position: chr6:2,948,456
INFO 2026-06-08 10:12:44 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:28s. Time for last 10,000,000: 16s. Last read position: chr6:31,736,298
INFO 2026-06-08 10:13:01 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 17s. Last read position: chr6:70,252,126
INFO 2026-06-08 10:13:18 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 17s. Last read position: chr6:158,771,392
INFO 2026-06-08 10:13:36 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 17s. Last read position: chr7:42,795,570
INFO 2026-06-08 10:13:53 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 17s. Last read position: chr7:100,352,374
INFO 2026-06-08 10:14:09 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 15s. Last read position: chr7:100,996,273
INFO 2026-06-08 10:14:25 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 15s. Last read position: chr7:100,998,766
INFO 2026-06-08 10:14:41 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:25s. Time for last 10,000,000: 15s. Last read position: chr7:101,001,819
INFO 2026-06-08 10:14:57 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 16s. Last read position: chr7:128,085,744
INFO 2026-06-08 10:15:15 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 17s. Last read position: chr8:24,331,191
INFO 2026-06-08 10:15:32 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 17s. Last read position: chr8:102,287,497
INFO 2026-06-08 10:15:48 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 16s. Last read position: chr8:143,865,535
INFO 2026-06-08 10:16:05 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 16s. Last read position: chr9:37,588,821
INFO 2026-06-08 10:16:22 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 17s. Last read position: chr9:125,240,240
INFO 2026-06-08 10:16:39 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 17s. Last read position: chr10:364,439
INFO 2026-06-08 10:16:57 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 17s. Last read position: chr10:77,811,927
INFO 2026-06-08 10:17:14 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:58s. Time for last 10,000,000: 17s. Last read position: chr10:124,787,651
INFO 2026-06-08 10:17:30 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 16s. Last read position: chr11:1,249,880
INFO 2026-06-08 10:17:48 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 17s. Last read position: chr11:58,527,612
INFO 2026-06-08 10:18:05 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 16s. Last read position: chr11:68,389,925
INFO 2026-06-08 10:18:22 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:06s. Time for last 10,000,000: 17s. Last read position: chr11:126,263,880
INFO 2026-06-08 10:18:39 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 17s. Last read position: chr12:47,966,118
INFO 2026-06-08 10:18:56 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 16s. Last read position: chr12:57,102,828
INFO 2026-06-08 10:19:13 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 17s. Last read position: chr12:113,942,351
INFO 2026-06-08 10:19:30 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 17s. Last read position: chr13:49,549,487
INFO 2026-06-08 10:19:47 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:32s. Time for last 10,000,000: 17s. Last read position: chr14:35,292,495
INFO 2026-06-08 10:20:05 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 17s. Last read position: chr14:100,239,395
INFO 2026-06-08 10:20:21 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:05s. Time for last 10,000,000: 16s. Last read position: chr15:25,340,123
INFO 2026-06-08 10:20:38 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:23s. Time for last 10,000,000: 17s. Last read position: chr15:72,208,757
INFO 2026-06-08 10:20:55 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:40s. Time for last 10,000,000: 17s. Last read position: chr16:3,290,231
INFO 2026-06-08 10:21:12 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:57s. Time for last 10,000,000: 17s. Last read position: chr16:28,606,144
INFO 2026-06-08 10:21:29 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:14s. Time for last 10,000,000: 16s. Last read position: chr16:67,952,382
INFO 2026-06-08 10:21:46 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:31s. Time for last 10,000,000: 17s. Last read position: chr17:4,892,991
INFO 2026-06-08 10:22:04 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 17s. Last read position: chr17:31,994,608
INFO 2026-06-08 10:22:21 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 17s. Last read position: chr17:47,652,874
INFO 2026-06-08 10:22:38 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:22s. Time for last 10,000,000: 17s. Last read position: chr17:64,824,625
INFO 2026-06-08 10:22:55 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 17s. Last read position: chr17:82,079,516
INFO 2026-06-08 10:23:12 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 17s. Last read position: chr19:2,129,079
INFO 2026-06-08 10:23:29 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:14s. Time for last 10,000,000: 17s. Last read position: chr19:13,081,813
INFO 2026-06-08 10:23:47 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 17s. Last read position: chr19:38,620,335
INFO 2026-06-08 10:24:03 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 16s. Last read position: chr19:41,715,216
INFO 2026-06-08 10:24:20 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 17s. Last read position: chr19:50,016,073
INFO 2026-06-08 10:24:38 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:22s. Time for last 10,000,000: 17s. Last read position: chr20:26,208,396
INFO 2026-06-08 10:24:55 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:39s. Time for last 10,000,000: 17s. Last read position: chr21:6,487,107
INFO 2026-06-08 10:25:12 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:56s. Time for last 10,000,000: 16s. Last read position: chr22:21,642,883
INFO 2026-06-08 10:25:29 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:13s. Time for last 10,000,000: 17s. Last read position: chr22:50,579,453
INFO 2026-06-08 10:25:46 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:18:31s. Time for last 10,000,000: 17s. Last read position: chrX:85,978,832
INFO 2026-06-08 10:26:04 MarkDuplicates Written 660,000,000 records. Elapsed time: 00:18:48s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 10:26:09 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:26:09 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:26:09 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:26:09 MarkDuplicates Before output close freeMemory: 201225096; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:26:09 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:26:09 MarkDuplicates After output close freeMemory: 104130472; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:26:09 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 47.89 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory