Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/c74031e45ad4dac87aabf3ddba9fd8/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/e52e45124e6eccf958cebf010ce5de/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/e52e45124e6eccf958cebf010ce5de/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/24a36d1d9196a6fd1fbf135356a4be/aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3b436b-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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