Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/69ec86b66af164b4cdbf076199df62/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/69ec86b66af164b4cdbf076199df62/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/41cb4312f3c4c3604f1dbd6d261861/aih-tih-sc-d963a2-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/ecb8f7ffd54bf2a72e6742bdc189f2/aih-tih-sc-d963a2-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
LINC00381--SYPL2
starfusion
TLK2--FAM157A
starfusion
arriba
TLK2P1--AC110079.1
starfusion
NRXN3--SYPL2
starfusion
arriba
AC136431.1--PKD1P5
starfusion
GUSBP13--NAIP
starfusion
arriba
PMS2P6--CCDC146
starfusion
arriba
UBE2Q2P1--GOLGA6L10
starfusion
GOLGA6L10--GOLGA2P6
starfusion
AC026150.1--GOLGA6L10
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
RBM14--RBM4
arriba
AL162574.2--SYPL2
arriba
PPIAP24--SYPL2
arriba
CRYZL2P--SEC16B
arriba
NPHP3--ACAD11
arriba
AC015911.9--SLFN12L
arriba
FAM102B--AC092506.1
arriba
FAM102B--AL591888.1
arriba

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Processing LINC00381--SYPL2:   0%|          | 0/20 [00:00<?, ?it/s]
Processing LINC00381--SYPL2:   5%|▌         | 1/20 [00:00<00:02,  9.26it/s]
Processing TLK2--FAM157A:   5%|▌         | 1/20 [00:00<00:02,  9.26it/s]   
Processing TLK2--FAM157A:  10%|█         | 2/20 [00:00<00:01,  9.48it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 2/20 [00:00<00:01,  9.48it/s]
Processing TLK2P1--AC110079.1:  15%|█▌        | 3/20 [00:00<00:01,  9.56it/s]
Processing NRXN3--SYPL2:  15%|█▌        | 3/20 [00:00<00:01,  9.56it/s]      
Processing NRXN3--SYPL2:  20%|██        | 4/20 [00:00<00:01,  9.59it/s]
Processing AC136431.1--PKD1P5:  20%|██        | 4/20 [00:00<00:01,  9.59it/s]
Processing AC136431.1--PKD1P5:  25%|██▌       | 5/20 [00:00<00:01,  9.61it/s]
Processing GUSBP13--NAIP:  25%|██▌       | 5/20 [00:00<00:01,  9.61it/s]     
Processing GUSBP13--NAIP:  30%|███       | 6/20 [00:00<00:01,  9.62it/s]
Processing PMS2P6--CCDC146:  30%|███       | 6/20 [00:00<00:01,  9.62it/s]
Processing PMS2P6--CCDC146:  35%|███▌      | 7/20 [00:00<00:01,  9.63it/s]
Processing UBE2Q2P1--GOLGA6L10:  35%|███▌      | 7/20 [00:00<00:01,  9.63it/s]
Processing UBE2Q2P1--GOLGA6L10:  40%|████      | 8/20 [00:00<00:01,  9.64it/s]
Processing GOLGA6L10--GOLGA2P6:  40%|████      | 8/20 [00:00<00:01,  9.64it/s]
Processing GOLGA6L10--GOLGA2P6:  45%|████▌     | 9/20 [00:00<00:01,  9.65it/s]
Processing AC026150.1--GOLGA6L10:  45%|████▌     | 9/20 [00:00<00:01,  9.65it/s]
Processing AC026150.1--GOLGA6L10:  50%|█████     | 10/20 [00:01<00:01,  9.65it/s]
Processing STX16--NPEPL1:  50%|█████     | 10/20 [00:01<00:01,  9.65it/s]        
Processing STX16--NPEPL1:  55%|█████▌    | 11/20 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  55%|█████▌    | 11/20 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  60%|██████    | 12/20 [00:01<00:00,  9.65it/s]
Processing RBM14--RBM4:  60%|██████    | 12/20 [00:01<00:00,  9.65it/s]  
Processing RBM14--RBM4:  65%|██████▌   | 13/20 [00:01<00:00,  9.65it/s]
Processing AL162574.2--SYPL2:  65%|██████▌   | 13/20 [00:01<00:00,  9.65it/s]
Processing AL162574.2--SYPL2:  70%|███████   | 14/20 [00:01<00:00,  9.66it/s]
Processing PPIAP24--SYPL2:  70%|███████   | 14/20 [00:01<00:00,  9.66it/s]   
Processing PPIAP24--SYPL2:  75%|███████▌  | 15/20 [00:01<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  75%|███████▌  | 15/20 [00:01<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  80%|████████  | 16/20 [00:01<00:00,  9.65it/s]
Processing NPHP3--ACAD11:  80%|████████  | 16/20 [00:01<00:00,  9.65it/s]  
Processing NPHP3--ACAD11:  85%|████████▌ | 17/20 [00:01<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  85%|████████▌ | 17/20 [00:01<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  90%|█████████ | 18/20 [00:01<00:00,  9.65it/s]
Processing FAM102B--AC092506.1:  90%|█████████ | 18/20 [00:01<00:00,  9.65it/s]
Processing FAM102B--AC092506.1:  95%|█████████▌| 19/20 [00:01<00:00,  9.65it/s]
Processing FAM102B--AL591888.1:  95%|█████████▌| 19/20 [00:01<00:00,  9.65it/s]
Processing FAM102B--AL591888.1: 100%|██████████| 20/20 [00:02<00:00,  9.66it/s]
Processing FAM102B--AL591888.1: 100%|██████████| 20/20 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory