File Info
- Filename
- aih-tih-sc-d963a2-R1_A23YTGFLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/69ec86b66af164b4cdbf076199df62/aih-tih-sc-d963a2-R1_A23YTGFLT4_1.fusions.csv
- Size
- 4.6 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-d963a2-R1_A23YTGFLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| LINC00381--SYPL2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:74426418:+#chr1:109476776:+,junction_reads: 43,spanning_reads: 0,ffmp: 0.1451 | ||
| TLK2--FAM157A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:62560126#chr3:198180755,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 14,discordant_mates: 1,coverage1: 1237,coverage2: 1012,confidence: high | position: chr17:62560126:+#chr3:198180755:+,junction_reads: 34,spanning_reads: 1,ffmp: 0.1084 | |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 26,spanning_reads: 0,ffmp: 0.0737 | ||
| NRXN3--SYPL2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr14:79314149#chr1:109475581,reading-frame: .,type: translocation,split_reads1: 3,split_reads2: 19,discordant_mates: 0,coverage1: 10,coverage2: 234,confidence: high | position: chr14:79314149:+#chr1:109475581:+,junction_reads: 22,spanning_reads: 0,ffmp: 0.0742 | |
| AC136431.1--PKD1P5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:16499619:+#chr16:18395957:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0574 | ||
| GUSBP13--NAIP | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr5:69920867#chr5:71003857,reading-frame: .,type: inversion,split_reads1: 12,split_reads2: 0,discordant_mates: 1,coverage1: 561,coverage2: 1167,confidence: high | position: chr5:69920867:+#chr5:71003857:-,junction_reads: 15,spanning_reads: 1,ffmp: 0.0177 | |
| PMS2P6--CCDC146 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:73097567#chr7:77236947,reading-frame: .,type: deletion,split_reads1: 7,split_reads2: 4,discordant_mates: 0,coverage1: 1394,coverage2: 465,confidence: high | position: chr7:73097567:+#chr7:77236947:+,junction_reads: 14,spanning_reads: 1,ffmp: 0.0488 | |
| UBE2Q2P1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:84526781:-#chr15:82347629:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.027 | ||
| GOLGA6L10--GOLGA2P6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:82347510:-#chr10:30370881:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0054 | ||
| AC026150.1--GOLGA6L10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:30544660:+#chr15:82347629:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0045 | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 121,split_reads2: 95,discordant_mates: 4,coverage1: 4843,coverage2: 896,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 61,split_reads2: 30,discordant_mates: 1,coverage1: 859,coverage2: 306,confidence: high | |
| RBM14--RBM4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr11:66617057#chr11:66646027,reading-frame: in-frame,type: deletion/read-through,split_reads1: 33,split_reads2: 43,discordant_mates: 1,coverage1: 9588,coverage2: 5027,confidence: high | |
| AL162574.2--SYPL2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:106784307#chr1:109476776,reading-frame: .,type: translocation,split_reads1: 5,split_reads2: 31,discordant_mates: 0,coverage1: 10,coverage2: 1422,confidence: high | ||
| PPIAP24--SYPL2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:106784307#chr1:109476776,reading-frame: .,type: translocation,split_reads1: 5,split_reads2: 31,discordant_mates: 0,coverage1: 10,coverage2: 1422,confidence: high | ||
| CRYZL2P--SEC16B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:178026155#chr1:177968039,reading-frame: .,type: deletion/read-through,split_reads1: 2,split_reads2: 31,discordant_mates: 2,coverage1: 59,coverage2: 468,confidence: high | ||
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 19,split_reads2: 7,discordant_mates: 1,coverage1: 359,coverage2: 558,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 12,split_reads2: 12,discordant_mates: 2,coverage1: 330,coverage2: 153,confidence: high | ||
| FAM102B--AC092506.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:108600686#chr1:104865859,reading-frame: out-of-frame,type: inversion,split_reads1: 15,split_reads2: 2,discordant_mates: 1,coverage1: 583,coverage2: 8,confidence: high | ||
| FAM102B--AL591888.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:108600686#chr1:104865859,reading-frame: out-of-frame,type: inversion,split_reads1: 15,split_reads2: 2,discordant_mates: 1,coverage1: 583,coverage2: 8,confidence: high |
21 rows