AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 132
Pass (FILTER=PASS): 2 (1.5%)
Fail (FILTER=FAIL): 130 (98.5%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 24
confidence_below_min(low<high): 14
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 11
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
confidence_below_min(medium<high): 6
confidence_below_min(medium<high);aih_curated_blacklist: 5
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 2 pass, 1 fail (total: 3)
low: 0 pass, 60 fail (total: 60)
medium: 0 pass, 69 fail (total: 69)
Arriba filter: 132 rows -> 2 PASS; wrote aih-tih-sc-318819-R1_A23YTGFLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-318819-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-318819-R1_A23YTGFLT4_1.arriba.fusions.filter_summary.txt