File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/4d0453f18d149b23308fea99e8bd53/.command.log
Size
7.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-656590-R1_A23YTGFLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-eb5d3959-7137-45a9-9f26-41f9201dcf7f/9d/27ef28c083f97facc14cc8364be994/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/4d0453f18d149b23308fea99e8bd53/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/4d0453f18d149b23308fea99e8bd53/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/7341b273d5edd94d0559bbcf798cbb/aih-tih-sc-656590-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/2cf301ef5eb9b86886f4326580199a/aih-tih-sc-656590-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NFX1--ARNT2
starfusion
arriba
AC079160.1--GRID2
starfusion
arriba
KIF24--NOL6
starfusion
arriba
PIGO--B4GALT1
starfusion
arriba
DDX58--AL355377.4
starfusion
arriba
AC138035.1--SEPTIN14
starfusion
TLK2--AC240565.1
starfusion
AP1B1--AL929601.3
starfusion
arriba
SEPTIN14--AL672310.1
starfusion
AL512624.2--POTEH
starfusion
TLK2P1--AC110079.1
starfusion
C20orf197--NOL4L
starfusion
arriba
POTEH-AS1--POTEG
starfusion
AMDHD1--ACAD11
starfusion
LINC00923--ARNT2
starfusion
arriba
AC008496.2--MRPL15
starfusion
RNASE10--STON2
starfusion
RNASE10--CD38
starfusion
GNAI2P1--ATF7IP
arriba
RPL30P11--ATF7IP
arriba
FA2H--FA2H
arriba
AC009132.1--FA2H
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
ARHGAP12--FOLR3
arriba
RPL34P19--FOLR3
arriba
IGFL1P2--HIF3A
arriba
UNC13B--B4GALT1
arriba
AC010904.1--ZC3H7B
arriba
AC013460.1--ZC3H7B
arriba
TLK2--FAM157A
arriba

  0%|          | 0/31 [00:00<?, ?it/s]
Processing NFX1--ARNT2:   0%|          | 0/31 [00:00<?, ?it/s]
Processing NFX1--ARNT2:   3%|▎         | 1/31 [00:00<00:03,  9.22it/s]
Processing AC079160.1--GRID2:   3%|▎         | 1/31 [00:00<00:03,  9.22it/s]
Processing AC079160.1--GRID2:   6%|▋         | 2/31 [00:00<00:03,  9.46it/s]
Processing KIF24--NOL6:   6%|▋         | 2/31 [00:00<00:03,  9.46it/s]      
Processing KIF24--NOL6:  10%|▉         | 3/31 [00:00<00:02,  9.54it/s]
Processing PIGO--B4GALT1:  10%|▉         | 3/31 [00:00<00:02,  9.54it/s]
Processing PIGO--B4GALT1:  13%|█▎        | 4/31 [00:00<00:02,  9.58it/s]
Processing DDX58--AL355377.4:  13%|█▎        | 4/31 [00:00<00:02,  9.58it/s]
Processing DDX58--AL355377.4:  16%|█▌        | 5/31 [00:00<00:02,  9.60it/s]
Processing AC138035.1--SEPTIN14:  16%|█▌        | 5/31 [00:00<00:02,  9.60it/s]
Processing AC138035.1--SEPTIN14:  19%|█▉        | 6/31 [00:00<00:02,  9.61it/s]
Processing TLK2--AC240565.1:  19%|█▉        | 6/31 [00:00<00:02,  9.61it/s]    
Processing TLK2--AC240565.1:  23%|██▎       | 7/31 [00:00<00:02,  9.62it/s]
Processing AP1B1--AL929601.3:  23%|██▎       | 7/31 [00:00<00:02,  9.62it/s]
Processing AP1B1--AL929601.3:  26%|██▌       | 8/31 [00:00<00:02,  9.62it/s]
Processing SEPTIN14--AL672310.1:  26%|██▌       | 8/31 [00:00<00:02,  9.62it/s]
Processing SEPTIN14--AL672310.1:  29%|██▉       | 9/31 [00:00<00:02,  9.62it/s]
Processing AL512624.2--POTEH:  29%|██▉       | 9/31 [00:00<00:02,  9.62it/s]   
Processing AL512624.2--POTEH:  32%|███▏      | 10/31 [00:01<00:02,  9.63it/s]
Processing TLK2P1--AC110079.1:  32%|███▏      | 10/31 [00:01<00:02,  9.63it/s]
Processing TLK2P1--AC110079.1:  35%|███▌      | 11/31 [00:01<00:02,  9.63it/s]
Processing C20orf197--NOL4L:  35%|███▌      | 11/31 [00:01<00:02,  9.63it/s]  
Processing C20orf197--NOL4L:  39%|███▊      | 12/31 [00:01<00:01,  9.64it/s]
Processing POTEH-AS1--POTEG:  39%|███▊      | 12/31 [00:01<00:01,  9.64it/s]
Processing POTEH-AS1--POTEG:  42%|████▏     | 13/31 [00:01<00:01,  9.63it/s]
Processing AMDHD1--ACAD11:  42%|████▏     | 13/31 [00:01<00:01,  9.63it/s]  
Processing AMDHD1--ACAD11:  45%|████▌     | 14/31 [00:01<00:01,  9.64it/s]
Processing LINC00923--ARNT2:  45%|████▌     | 14/31 [00:01<00:01,  9.64it/s]
Processing LINC00923--ARNT2:  48%|████▊     | 15/31 [00:01<00:01,  9.64it/s]
Processing AC008496.2--MRPL15:  48%|████▊     | 15/31 [00:01<00:01,  9.64it/s]
Processing AC008496.2--MRPL15:  52%|█████▏    | 16/31 [00:01<00:01,  9.64it/s]
Processing RNASE10--STON2:  52%|█████▏    | 16/31 [00:01<00:01,  9.64it/s]    
Processing RNASE10--STON2:  55%|█████▍    | 17/31 [00:01<00:01,  9.63it/s]
Processing RNASE10--CD38:  55%|█████▍    | 17/31 [00:01<00:01,  9.63it/s] 
Processing RNASE10--CD38:  58%|█████▊    | 18/31 [00:01<00:01,  9.63it/s]
Processing GNAI2P1--ATF7IP:  58%|█████▊    | 18/31 [00:01<00:01,  9.63it/s]
Processing GNAI2P1--ATF7IP:  61%|██████▏   | 19/31 [00:01<00:01,  9.63it/s]
Processing RPL30P11--ATF7IP:  61%|██████▏   | 19/31 [00:01<00:01,  9.63it/s]
Processing RPL30P11--ATF7IP:  65%|██████▍   | 20/31 [00:02<00:01,  9.64it/s]
Processing FA2H--FA2H:  65%|██████▍   | 20/31 [00:02<00:01,  9.64it/s]      
Processing FA2H--FA2H:  68%|██████▊   | 21/31 [00:02<00:01,  9.64it/s]
Processing AC009132.1--FA2H:  68%|██████▊   | 21/31 [00:02<00:01,  9.64it/s]
Processing AC009132.1--FA2H:  71%|███████   | 22/31 [00:02<00:00,  9.64it/s]
Processing STX16--NPEPL1:  71%|███████   | 22/31 [00:02<00:00,  9.64it/s]   
Processing STX16--NPEPL1:  74%|███████▍  | 23/31 [00:02<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  74%|███████▍  | 23/31 [00:02<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  77%|███████▋  | 24/31 [00:02<00:00,  9.64it/s]
Processing ARHGAP12--FOLR3:  77%|███████▋  | 24/31 [00:02<00:00,  9.64it/s]
Processing ARHGAP12--FOLR3:  81%|████████  | 25/31 [00:02<00:00,  9.64it/s]
Processing RPL34P19--FOLR3:  81%|████████  | 25/31 [00:02<00:00,  9.64it/s]
Processing RPL34P19--FOLR3:  84%|████████▍ | 26/31 [00:02<00:00,  9.63it/s]
Processing IGFL1P2--HIF3A:  84%|████████▍ | 26/31 [00:02<00:00,  9.63it/s] 
Processing IGFL1P2--HIF3A:  87%|████████▋ | 27/31 [00:02<00:00,  9.63it/s]
Processing UNC13B--B4GALT1:  87%|████████▋ | 27/31 [00:02<00:00,  9.63it/s]
Processing UNC13B--B4GALT1:  90%|█████████ | 28/31 [00:02<00:00,  9.63it/s]
Processing AC010904.1--ZC3H7B:  90%|█████████ | 28/31 [00:02<00:00,  9.63it/s]
Processing AC010904.1--ZC3H7B:  94%|█████████▎| 29/31 [00:03<00:00,  9.63it/s]
Processing AC013460.1--ZC3H7B:  94%|█████████▎| 29/31 [00:03<00:00,  9.63it/s]
Processing AC013460.1--ZC3H7B:  97%|█████████▋| 30/31 [00:03<00:00,  9.63it/s]
Processing TLK2--FAM157A:  97%|█████████▋| 30/31 [00:03<00:00,  9.63it/s]     
Processing TLK2--FAM157A: 100%|██████████| 31/31 [00:03<00:00,  9.64it/s]
Processing TLK2--FAM157A: 100%|██████████| 31/31 [00:03<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory