Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9b19c4d5b603a213aeb8f63b571689/fi_workdir/aih-tih-sc-64fc89-R1_A23YTGFLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/ec0c91ec1f54f83fc5ea28826b9337/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/ec0c91ec1f54f83fc5ea28826b9337/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 18586
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 18586
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:18586
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 4 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKT1--BRF1 HAVANA gene 19683 45871 . + . FI_gene_label "BRF1^ENSG00000185024.17" ; ID "AKT1--BRF1^BRF1^ENSG00000185024.17" ; ccdsid "CCDS55950.1" ; exon_id "ENSE00003604786.1" ; exon_number 3 ; gene_id "AKT1--BRF1^BRF1^ENSG00000185024.17" ; gene_name BRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029884.9" ; havana_transcript "OTTHUMT00000408735.1" ; hgnc_id "HGNC:11551" ; level 2 ; orig_coord_info "chr14,105272721,105272814,-" ; protein_id "ENSP00000329029.3" ; tag basic CCDS ; transcript_id "AKT1--BRF1^ENST00000327359.7" ; transcript_name "BRF1-201" ; transcript_support_level 2 ; transcript_type protein_coding
AKT1--BRF1 HAVANA mRNA 19683 45871 . + . FI_gene_label "BRF1^ENSG00000185024.17" ; ID "AKT1--BRF1^ENST00000327359.7" ; Parent "AKT1--BRF1^BRF1^ENSG00000185024.17" ; ccdsid "CCDS55950.1" ; exon_id "ENSE00003604786.1" ; exon_number 3 ; gene_id "AKT1--BRF1^BRF1^ENSG00000185024.17" ; gene_name BRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029884.9" ; havana_transcript "OTTHUMT00000408735.1" ; hgnc_id "HGNC:11551" ; level 2 ; orig_coord_info "chr14,105272721,105272814,-" ; protein_id "ENSP00000329029.3" ; tag basic CCDS ; transcript_id "AKT1--BRF1^ENST00000327359.7" ; transcript_name "BRF1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AKT1--BRF1 HAVANA gene 1001 16583 . + . FI_gene_label "AKT1^ENSG00000142208.17" ; ID "AKT1--BRF1^AKT1^ENSG00000142208.17" ; ccdsid "CCDS9994.1" ; exon_id "ENSE00001394660.1" ; exon_number 3 ; gene_id "AKT1--BRF1^AKT1^ENSG00000142208.17" ; gene_name AKT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170795.7" ; havana_transcript "OTTHUMT00000410379.2" ; hgnc_id "HGNC:391" ; level 2 ; orig_coord_info "chr14,104792598,104792643,-" ; protein_id "ENSP00000270202.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AKT1--BRF1^ENST00000349310.7" ; transcript_name "AKT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKT1--BRF1 HAVANA mRNA 1001 16583 . + . FI_gene_label "AKT1^ENSG00000142208.17" ; ID "AKT1--BRF1^ENST00000349310.7" ; Parent "AKT1--BRF1^AKT1^ENSG00000142208.17" ; ccdsid "CCDS9994.1" ; exon_id "ENSE00001394660.1" ; exon_number 3 ; gene_id "AKT1--BRF1^AKT1^ENSG00000142208.17" ; gene_name AKT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170795.7" ; havana_transcript "OTTHUMT00000410379.2" ; hgnc_id "HGNC:391" ; level 2 ; orig_coord_info "chr14,104792598,104792643,-" ; protein_id "ENSP00000270202.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AKT1--BRF1^ENST00000349310.7" ; transcript_name "AKT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKT1--CEP170B HAVANA gene 1001 16583 . + . FI_gene_label "AKT1^ENSG00000142208.17" ; ID "AKT1--CEP170B^AKT1^ENSG00000142208.17" ; ccdsid "CCDS9994.1" ; exon_id "ENSE00001394660.1" ; exon_number 3 ; gene_id "AKT1--CEP170B^AKT1^ENSG00000142208.17" ; gene_name AKT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170795.7" ; havana_transcript "OTTHUMT00000410379.2" ; hgnc_id "HGNC:391" ; level 2 ; orig_coord_info "chr14,104792598,104792643,-" ; protein_id "ENSP00000270202.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AKT1--CEP170B^ENST00000349310.7" ; transcript_name "AKT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKT1--CEP170B HAVANA mRNA 1001 16583 . + . FI_gene_label "AKT1^ENSG00000142208.17" ; ID "AKT1--CEP170B^ENST00000349310.7" ; Parent "AKT1--CEP170B^AKT1^ENSG00000142208.17" ; ccdsid "CCDS9994.1" ; exon_id "ENSE00001394660.1" ; exon_number 3 ; gene_id "AKT1--CEP170B^AKT1^ENSG00000142208.17" ; gene_name AKT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170795.7" ; havana_transcript "OTTHUMT00000410379.2" ; hgnc_id "HGNC:391" ; level 2 ; orig_coord_info "chr14,104792598,104792643,-" ; protein_id "ENSP00000270202.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AKT1--CEP170B^ENST00000349310.7" ; transcript_name "AKT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKT1--CEP170B HAVANA gene 19584 37074 . + . FI_gene_label "CEP170B^ENSG00000099814.16" ; ID "AKT1--CEP170B^CEP170B^ENSG00000099814.16" ; ccdsid "CCDS45175.1" ; exon_id "ENSE00001674345.1" ; exon_number 2 ; gene_id "AKT1--CEP170B^CEP170B^ENSG00000099814.16" ; gene_name CEP170B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170763.3" ; havana_transcript "OTTHUMT00000410289.3" ; hgnc_id "HGNC:20362" ; level 2 ; orig_coord_info "chr14,104868451,104868555,+" ; protein_id "ENSP00000404151.2" ; tag basic MANE_Select CCDS ; transcript_id "AKT1--CEP170B^ENST00000414716.8" ; transcript_name "CEP170B-202" ; transcript_support_level 1 ; transcript_type protein_coding
AKT1--CEP170B HAVANA mRNA 19584 37074 . + . FI_gene_label "CEP170B^ENSG00000099814.16" ; ID "AKT1--CEP170B^ENST00000414716.8" ; Parent "AKT1--CEP170B^CEP170B^ENSG00000099814.16" ; ccdsid "CCDS45175.1" ; exon_id "ENSE00001674345.1" ; exon_number 2 ; gene_id "AKT1--CEP170B^CEP170B^ENSG00000099814.16" ; gene_name CEP170B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170763.3" ; havana_transcript "OTTHUMT00000410289.3" ; hgnc_id "HGNC:20362" ; level 2 ; orig_coord_info "chr14,104868451,104868555,+" ; protein_id "ENSP00000404151.2" ; tag basic MANE_Select CCDS ; transcript_id "AKT1--CEP170B^ENST00000414716.8" ; transcript_name "CEP170B-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKT1--PACS2 HAVANA gene 21001 45687 . + . FI_gene_label "PACS2^ENSG00000179364.14" ; ID "AKT1--PACS2^PACS2^ENSG00000179364.14" ; ccdsid "CCDS32168.1" ; exon_id "ENSE00002400785.1" ; exon_number 1 ; gene_id "AKT1--PACS2^PACS2^ENSG00000179364.14" ; gene_name PACS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170450.3" ; havana_transcript "OTTHUMT00000409209.1" ; hgnc_id "HGNC:23794" ; level 2 ; orig_coord_info "chr14,105314919,105315037,+" ; protein_id "ENSP00000321834.8" ; tag basic appris_principal_2 CCDS ; transcript_id "AKT1--PACS2^ENST00000325438.12" ; transcript_name "PACS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKT1--PACS2 HAVANA mRNA 21001 45687 . + . FI_gene_label "PACS2^ENSG00000179364.14" ; ID "AKT1--PACS2^ENST00000325438.12" ; Parent "AKT1--PACS2^PACS2^ENSG00000179364.14" ; ccdsid "CCDS32168.1" ; exon_id "ENSE00002400785.1" ; exon_number 1 ; gene_id "AKT1--PACS2^PACS2^ENSG00000179364.14" ; gene_name PACS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170450.3" ; havana_transcript "OTTHUMT00000409209.1" ; hgnc_id "HGNC:23794" ; level 2 ; orig_coord_info "chr14,105314919,105315037,+" ; protein_id "ENSP00000321834.8" ; tag basic appris_principal_2 CCDS ; transcript_id "AKT1--PACS2^ENST00000325438.12" ; transcript_name "PACS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKT1--PACS2 HAVANA gene 1001 16583 . + . FI_gene_label "AKT1^ENSG00000142208.17" ; ID "AKT1--PACS2^AKT1^ENSG00000142208.17" ; ccdsid "CCDS9994.1" ; exon_id "ENSE00001394660.1" ; exon_number 3 ; gene_id "AKT1--PACS2^AKT1^ENSG00000142208.17" ; gene_name AKT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170795.7" ; havana_transcript "OTTHUMT00000410379.2" ; hgnc_id "HGNC:391" ; level 2 ; orig_coord_info "chr14,104792598,104792643,-" ; protein_id "ENSP00000270202.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AKT1--PACS2^ENST00000349310.7" ; transcript_name "AKT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKT1--PACS2 HAVANA mRNA 1001 16583 . + . FI_gene_label "AKT1^ENSG00000142208.17" ; ID "AKT1--PACS2^ENST00000349310.7" ; Parent "AKT1--PACS2^AKT1^ENSG00000142208.17" ; ccdsid "CCDS9994.1" ; exon_id "ENSE00001394660.1" ; exon_number 3 ; gene_id "AKT1--PACS2^AKT1^ENSG00000142208.17" ; gene_name AKT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170795.7" ; havana_transcript "OTTHUMT00000410379.2" ; hgnc_id "HGNC:391" ; level 2 ; orig_coord_info "chr14,104792598,104792643,-" ; protein_id "ENSP00000270202.4" ; tag basic appris_principal_1 CCDS ; transcript_id "AKT1--PACS2^ENST00000349310.7" ; transcript_name "AKT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL359915.1--KPNA3 HAVANA gene 12425 27304 . + . FI_gene_label "KPNA3^ENSG00000102753.10" ; ID "AL359915.1--KPNA3^KPNA3^ENSG00000102753.10" ; ccdsid "CCDS9421.1" ; exon_id "ENSE00001307048.2" ; exon_number 1 ; gene_id "AL359915.1--KPNA3^KPNA3^ENSG00000102753.10" ; gene_name KPNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016922.4" ; havana_transcript "OTTHUMT00000044939.4" ; hgnc_id "HGNC:6396" ; level 2 ; orig_coord_info "chr13,49792438,49792506,-" ; protein_id "ENSP00000261667.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL359915.1--KPNA3^ENST00000261667.8" ; transcript_name "KPNA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL359915.1--KPNA3 HAVANA mRNA 12425 27304 . + . FI_gene_label "KPNA3^ENSG00000102753.10" ; ID "AL359915.1--KPNA3^ENST00000261667.8" ; Parent "AL359915.1--KPNA3^KPNA3^ENSG00000102753.10" ; ccdsid "CCDS9421.1" ; exon_id "ENSE00001307048.2" ; exon_number 1 ; gene_id "AL359915.1--KPNA3^KPNA3^ENSG00000102753.10" ; gene_name KPNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016922.4" ; havana_transcript "OTTHUMT00000044939.4" ; hgnc_id "HGNC:6396" ; level 2 ; orig_coord_info "chr13,49792438,49792506,-" ; protein_id "ENSP00000261667.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL359915.1--KPNA3^ENST00000261667.8" ; transcript_name "KPNA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKMY1--HDAC4 HAVANA gene 4535 29613 . + . FI_gene_label "ANKMY1^ENSG00000144504.15" ; ID "ANKMY1--HDAC4^ANKMY1^ENSG00000144504.15" ; ccdsid "CCDS2536.1" ; exon_id "ENSE00003621766.1" ; exon_number 2 ; gene_id "ANKMY1--HDAC4^ANKMY1^ENSG00000144504.15" ; gene_name ANKMY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133355.9" ; havana_transcript "OTTHUMT00000257187.2" ; hgnc_id "HGNC:20987" ; level 2 ; orig_coord_info "chr2,240554866,240554934,-" ; protein_id "ENSP00000272972.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ANKMY1--HDAC4^ENST00000272972.7" ; transcript_name "ANKMY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKMY1--HDAC4 HAVANA mRNA 4535 29613 . + . FI_gene_label "ANKMY1^ENSG00000144504.15" ; ID "ANKMY1--HDAC4^ENST00000272972.7" ; Parent "ANKMY1--HDAC4^ANKMY1^ENSG00000144504.15" ; ccdsid "CCDS2536.1" ; exon_id "ENSE00003621766.1" ; exon_number 2 ; gene_id "ANKMY1--HDAC4^ANKMY1^ENSG00000144504.15" ; gene_name ANKMY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133355.9" ; havana_transcript "OTTHUMT00000257187.2" ; hgnc_id "HGNC:20987" ; level 2 ; orig_coord_info "chr2,240554866,240554934,-" ; protein_id "ENSP00000272972.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ANKMY1--HDAC4^ENST00000272972.7" ; transcript_name "ANKMY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKMY1--HDAC4 HAVANA gene 33319 78432 . + . FI_gene_label "HDAC4^ENSG00000068024.17" ; ID "ANKMY1--HDAC4^HDAC4^ENSG00000068024.17" ; ccdsid "CCDS2529.1" ; exon_id "ENSE00003664840.1" ; exon_number 2 ; gene_id "ANKMY1--HDAC4^HDAC4^ENSG00000068024.17" ; gene_name HDAC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133344.7" ; havana_transcript "OTTHUMT00000257174.2" ; hgnc_id "HGNC:14063" ; level 2 ; orig_coord_info "chr2,239352678,239352699,-" ; protein_id "ENSP00000264606.3" ; tag basic appris_principal_2 CCDS ; transcript_id "ANKMY1--HDAC4^ENST00000345617.7" ; transcript_name "HDAC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKMY1--HDAC4 HAVANA mRNA 33319 78432 . + . FI_gene_label "HDAC4^ENSG00000068024.17" ; ID "ANKMY1--HDAC4^ENST00000345617.7" ; Parent "ANKMY1--HDAC4^HDAC4^ENSG00000068024.17" ; ccdsid "CCDS2529.1" ; exon_id "ENSE00003664840.1" ; exon_number 2 ; gene_id "ANKMY1--HDAC4^HDAC4^ENSG00000068024.17" ; gene_name HDAC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133344.7" ; havana_transcript "OTTHUMT00000257174.2" ; hgnc_id "HGNC:14063" ; level 2 ; orig_coord_info "chr2,239352678,239352699,-" ; protein_id "ENSP00000264606.3" ; tag basic appris_principal_2 CCDS ; transcript_id "ANKMY1--HDAC4^ENST00000345617.7" ; transcript_name "HDAC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP11A--RSBN1 HAVANA gene 47638 60353 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "ATP11A--RSBN1^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "ATP11A--RSBN1^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATP11A--RSBN1^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ATP11A--RSBN1 HAVANA mRNA 47638 60353 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "ATP11A--RSBN1^ENST00000261441.9" ; Parent "ATP11A--RSBN1^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "ATP11A--RSBN1^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATP11A--RSBN1^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ATP11A--RSBN1 ENSEMBL gene 1001 44637 . + . FI_gene_label "ATP11A^ENSG00000068650.18" ; ID "ATP11A--RSBN1^ATP11A^ENSG00000068650.18" ; exon_id "ENSE00001740661.1" ; exon_number 1 ; gene_id "ATP11A--RSBN1^ATP11A^ENSG00000068650.18" ; gene_name ATP11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017371.10" ; hgnc_id "HGNC:13552" ; level 3 ; orig_coord_info "chr13,112690417,112690455,+" ; protein_id "ENSP00000364781.2" ; tag basic appris_alternative_2 ; transcript_id "ATP11A--RSBN1^ENST00000375630.6" ; transcript_name "ATP11A-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP11A--RSBN1 ENSEMBL mRNA 1001 44637 . + . FI_gene_label "ATP11A^ENSG00000068650.18" ; ID "ATP11A--RSBN1^ENST00000375630.6" ; Parent "ATP11A--RSBN1^ATP11A^ENSG00000068650.18" ; exon_id "ENSE00001740661.1" ; exon_number 1 ; gene_id "ATP11A--RSBN1^ATP11A^ENSG00000068650.18" ; gene_name ATP11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017371.10" ; hgnc_id "HGNC:13552" ; level 3 ; orig_coord_info "chr13,112690417,112690455,+" ; protein_id "ENSP00000364781.2" ; tag basic appris_alternative_2 ; transcript_id "ATP11A--RSBN1^ENST00000375630.6" ; transcript_name "ATP11A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAHCC1--ASPSCR1 HAVANA gene 32712 54643 . + . FI_gene_label "ASPSCR1^ENSG00000169696.16" ; ID "BAHCC1--ASPSCR1^ASPSCR1^ENSG00000169696.16" ; ccdsid "CCDS58611.1" ; exon_id "ENSE00001293510.2" ; exon_number 1 ; gene_id "BAHCC1--ASPSCR1^ASPSCR1^ENSG00000169696.16" ; gene_name ASPSCR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178438.6" ; havana_transcript "OTTHUMT00000441971.1" ; hgnc_id "HGNC:13825" ; level 2 ; orig_coord_info "chr17,81977647,81977748,+" ; protein_id "ENSP00000306625.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "BAHCC1--ASPSCR1^ENST00000306729.11" ; transcript_name "ASPSCR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
BAHCC1--ASPSCR1 HAVANA mRNA 32712 54643 . + . FI_gene_label "ASPSCR1^ENSG00000169696.16" ; ID "BAHCC1--ASPSCR1^ENST00000306729.11" ; Parent "BAHCC1--ASPSCR1^ASPSCR1^ENSG00000169696.16" ; ccdsid "CCDS58611.1" ; exon_id "ENSE00001293510.2" ; exon_number 1 ; gene_id "BAHCC1--ASPSCR1^ASPSCR1^ENSG00000169696.16" ; gene_name ASPSCR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178438.6" ; havana_transcript "OTTHUMT00000441971.1" ; hgnc_id "HGNC:13825" ; level 2 ; orig_coord_info "chr17,81977647,81977748,+" ; protein_id "ENSP00000306625.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "BAHCC1--ASPSCR1^ENST00000306729.11" ; transcript_name "ASPSCR1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BAHCC1--ASPSCR1 ENSEMBL gene 2386 28968 . + . FI_gene_label "BAHCC1^ENSG00000266074.10" ; ID "BAHCC1--ASPSCR1^BAHCC1^ENSG00000266074.10" ; exon_id "ENSE00001803947.1" ; exon_number 1 ; gene_id "BAHCC1--ASPSCR1^BAHCC1^ENSG00000266074.10" ; gene_name BAHCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184171.3" ; hgnc_id "HGNC:29279" ; level 3 ; orig_coord_info "chr17,81399740,81399917,+" ; protein_id "ENSP00000303486.8" ; tag basic appris_alternative_2 ; transcript_id "BAHCC1--ASPSCR1^ENST00000307745.8" ; transcript_name "BAHCC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAHCC1--ASPSCR1 ENSEMBL mRNA 2386 28968 . + . FI_gene_label "BAHCC1^ENSG00000266074.10" ; ID "BAHCC1--ASPSCR1^ENST00000307745.8" ; Parent "BAHCC1--ASPSCR1^BAHCC1^ENSG00000266074.10" ; exon_id "ENSE00001803947.1" ; exon_number 1 ; gene_id "BAHCC1--ASPSCR1^BAHCC1^ENSG00000266074.10" ; gene_name BAHCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184171.3" ; hgnc_id "HGNC:29279" ; level 3 ; orig_coord_info "chr17,81399740,81399917,+" ; protein_id "ENSP00000303486.8" ; tag basic appris_alternative_2 ; transcript_id "BAHCC1--ASPSCR1^ENST00000307745.8" ; transcript_name "BAHCC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAHCC1--BAIAP2 ENSEMBL gene 2386 28968 . + . FI_gene_label "BAHCC1^ENSG00000266074.10" ; ID "BAHCC1--BAIAP2^BAHCC1^ENSG00000266074.10" ; exon_id "ENSE00001803947.1" ; exon_number 1 ; gene_id "BAHCC1--BAIAP2^BAHCC1^ENSG00000266074.10" ; gene_name BAHCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184171.3" ; hgnc_id "HGNC:29279" ; level 3 ; orig_coord_info "chr17,81399740,81399917,+" ; protein_id "ENSP00000303486.8" ; tag basic appris_alternative_2 ; transcript_id "BAHCC1--BAIAP2^ENST00000307745.8" ; transcript_name "BAHCC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAHCC1--BAIAP2 ENSEMBL mRNA 2386 28968 . + . FI_gene_label "BAHCC1^ENSG00000266074.10" ; ID "BAHCC1--BAIAP2^ENST00000307745.8" ; Parent "BAHCC1--BAIAP2^BAHCC1^ENSG00000266074.10" ; exon_id "ENSE00001803947.1" ; exon_number 1 ; gene_id "BAHCC1--BAIAP2^BAHCC1^ENSG00000266074.10" ; gene_name BAHCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184171.3" ; hgnc_id "HGNC:29279" ; level 3 ; orig_coord_info "chr17,81399740,81399917,+" ; protein_id "ENSP00000303486.8" ; tag basic appris_alternative_2 ; transcript_id "BAHCC1--BAIAP2^ENST00000307745.8" ; transcript_name "BAHCC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAHCC1--BAIAP2 HAVANA gene 31969 55565 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAHCC1--BAIAP2^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAHCC1--BAIAP2^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAHCC1--BAIAP2^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAHCC1--BAIAP2 HAVANA mRNA 31969 55565 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAHCC1--BAIAP2^ENST00000321280.11" ; Parent "BAHCC1--BAIAP2^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAHCC1--BAIAP2^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAHCC1--BAIAP2^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2--BAHCC1 ENSEMBL gene 33367 59949 . + . FI_gene_label "BAHCC1^ENSG00000266074.10" ; ID "BAIAP2--BAHCC1^BAHCC1^ENSG00000266074.10" ; exon_id "ENSE00001803947.1" ; exon_number 1 ; gene_id "BAIAP2--BAHCC1^BAHCC1^ENSG00000266074.10" ; gene_name BAHCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184171.3" ; hgnc_id "HGNC:29279" ; level 3 ; orig_coord_info "chr17,81399740,81399917,+" ; protein_id "ENSP00000303486.8" ; tag basic appris_alternative_2 ; transcript_id "BAIAP2--BAHCC1^ENST00000307745.8" ; transcript_name "BAHCC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAIAP2--BAHCC1 ENSEMBL mRNA 33367 59949 . + . FI_gene_label "BAHCC1^ENSG00000266074.10" ; ID "BAIAP2--BAHCC1^ENST00000307745.8" ; Parent "BAIAP2--BAHCC1^BAHCC1^ENSG00000266074.10" ; exon_id "ENSE00001803947.1" ; exon_number 1 ; gene_id "BAIAP2--BAHCC1^BAHCC1^ENSG00000266074.10" ; gene_name BAHCC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184171.3" ; hgnc_id "HGNC:29279" ; level 3 ; orig_coord_info "chr17,81399740,81399917,+" ; protein_id "ENSP00000303486.8" ; tag basic appris_alternative_2 ; transcript_id "BAIAP2--BAHCC1^ENST00000307745.8" ; transcript_name "BAHCC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2--BAHCC1 HAVANA gene 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--BAHCC1^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--BAHCC1^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--BAHCC1^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2--BAHCC1 HAVANA mRNA 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--BAHCC1^ENST00000321280.11" ; Parent "BAIAP2--BAHCC1^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--BAHCC1^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--BAHCC1^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2--SLC38A10 HAVANA gene 32262 49506 . + . FI_gene_label "SLC38A10^ENSG00000157637.13" ; ID "BAIAP2--SLC38A10^SLC38A10^ENSG00000157637.13" ; ccdsid "CCDS11780.1" ; exon_id "ENSE00002313846.1" ; exon_number 1 ; gene_id "BAIAP2--SLC38A10^SLC38A10^ENSG00000157637.13" ; gene_name SLC38A10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168049.4" ; havana_transcript "OTTHUMT00000397751.1" ; hgnc_id "HGNC:28237" ; level 2 ; orig_coord_info "chr17,81294823,81294921,-" ; protein_id "ENSP00000288439.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "BAIAP2--SLC38A10^ENST00000288439.9" ; transcript_name "SLC38A10-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2--SLC38A10 HAVANA mRNA 32262 49506 . + . FI_gene_label "SLC38A10^ENSG00000157637.13" ; ID "BAIAP2--SLC38A10^ENST00000288439.9" ; Parent "BAIAP2--SLC38A10^SLC38A10^ENSG00000157637.13" ; ccdsid "CCDS11780.1" ; exon_id "ENSE00002313846.1" ; exon_number 1 ; gene_id "BAIAP2--SLC38A10^SLC38A10^ENSG00000157637.13" ; gene_name SLC38A10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168049.4" ; havana_transcript "OTTHUMT00000397751.1" ; hgnc_id "HGNC:28237" ; level 2 ; orig_coord_info "chr17,81294823,81294921,-" ; protein_id "ENSP00000288439.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "BAIAP2--SLC38A10^ENST00000288439.9" ; transcript_name "SLC38A10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2--SLC38A10 HAVANA gene 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--SLC38A10^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--SLC38A10^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--SLC38A10^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2--SLC38A10 HAVANA mRNA 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--SLC38A10^ENST00000321280.11" ; Parent "BAIAP2--SLC38A10^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--SLC38A10^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--SLC38A10^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSG--CSNK1G2 HAVANA gene 13487 24316 . + . FI_gene_label "CSNK1G2^ENSG00000133275.16" ; ID "BSG--CSNK1G2^CSNK1G2^ENSG00000133275.16" ; ccdsid "CCDS12077.1" ; exon_id "ENSE00002281299.1" ; exon_number 2 ; gene_id "BSG--CSNK1G2^CSNK1G2^ENSG00000133275.16" ; gene_name CSNK1G2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180016.5" ; havana_transcript "OTTHUMT00000449287.3" ; hgnc_id "HGNC:2455" ; level 2 ; orig_coord_info "chr19,1969773,1969959,+" ; protein_id "ENSP00000255641.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--CSNK1G2^ENST00000255641.13" ; transcript_name "CSNK1G2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSG--CSNK1G2 HAVANA mRNA 13487 24316 . + . FI_gene_label "CSNK1G2^ENSG00000133275.16" ; ID "BSG--CSNK1G2^ENST00000255641.13" ; Parent "BSG--CSNK1G2^CSNK1G2^ENSG00000133275.16" ; ccdsid "CCDS12077.1" ; exon_id "ENSE00002281299.1" ; exon_number 2 ; gene_id "BSG--CSNK1G2^CSNK1G2^ENSG00000133275.16" ; gene_name CSNK1G2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180016.5" ; havana_transcript "OTTHUMT00000449287.3" ; hgnc_id "HGNC:2455" ; level 2 ; orig_coord_info "chr19,1969773,1969959,+" ; protein_id "ENSP00000255641.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--CSNK1G2^ENST00000255641.13" ; transcript_name "CSNK1G2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSG--CSNK1G2 HAVANA gene 2320 10485 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "BSG--CSNK1G2^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "BSG--CSNK1G2^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--CSNK1G2^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSG--CSNK1G2 HAVANA mRNA 2320 10485 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "BSG--CSNK1G2^ENST00000333511.9" ; Parent "BSG--CSNK1G2^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "BSG--CSNK1G2^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--CSNK1G2^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSG--DAZAP1 HAVANA gene 13504 31255 . + . FI_gene_label "DAZAP1^ENSG00000071626.17" ; ID "BSG--DAZAP1^DAZAP1^ENSG00000071626.17" ; ccdsid "CCDS12065.1" ; exon_id "ENSE00000000082.2" ; exon_number 1 ; gene_id "BSG--DAZAP1^DAZAP1^ENSG00000071626.17" ; gene_name DAZAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180058.9" ; havana_transcript "OTTHUMT00000449522.3" ; hgnc_id "HGNC:2683" ; level 2 ; orig_coord_info "chr19,1407774,1407802,+" ; protein_id "ENSP00000233078.4" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "BSG--DAZAP1^ENST00000233078.9" ; transcript_name "DAZAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSG--DAZAP1 HAVANA mRNA 13504 31255 . + . FI_gene_label "DAZAP1^ENSG00000071626.17" ; ID "BSG--DAZAP1^ENST00000233078.9" ; Parent "BSG--DAZAP1^DAZAP1^ENSG00000071626.17" ; ccdsid "CCDS12065.1" ; exon_id "ENSE00000000082.2" ; exon_number 1 ; gene_id "BSG--DAZAP1^DAZAP1^ENSG00000071626.17" ; gene_name DAZAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180058.9" ; havana_transcript "OTTHUMT00000449522.3" ; hgnc_id "HGNC:2683" ; level 2 ; orig_coord_info "chr19,1407774,1407802,+" ; protein_id "ENSP00000233078.4" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "BSG--DAZAP1^ENST00000233078.9" ; transcript_name "DAZAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSG--DAZAP1 HAVANA gene 2320 10485 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "BSG--DAZAP1^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "BSG--DAZAP1^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--DAZAP1^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSG--DAZAP1 HAVANA mRNA 2320 10485 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "BSG--DAZAP1^ENST00000333511.9" ; Parent "BSG--DAZAP1^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "BSG--DAZAP1^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--DAZAP1^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSG--SBNO2 HAVANA gene 2320 10485 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "BSG--SBNO2^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "BSG--SBNO2^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--SBNO2^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSG--SBNO2 HAVANA mRNA 2320 10485 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "BSG--SBNO2^ENST00000333511.9" ; Parent "BSG--SBNO2^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "BSG--SBNO2^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BSG--SBNO2^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSG--SBNO2 HAVANA gene 13487 37781 . + . FI_gene_label "SBNO2^ENSG00000064932.16" ; ID "BSG--SBNO2^SBNO2^ENSG00000064932.16" ; ccdsid "CCDS45894.1" ; exon_id "ENSE00002286470.1" ; exon_number 2 ; gene_id "BSG--SBNO2^SBNO2^ENSG00000064932.16" ; gene_name SBNO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181875.7" ; havana_transcript "OTTHUMT00000458065.4" ; hgnc_id "HGNC:29158" ; level 2 ; orig_coord_info "chr19,1154184,1154276,-" ; protein_id "ENSP00000354733.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BSG--SBNO2^ENST00000361757.8" ; transcript_name "SBNO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSG--SBNO2 HAVANA mRNA 13487 37781 . + . FI_gene_label "SBNO2^ENSG00000064932.16" ; ID "BSG--SBNO2^ENST00000361757.8" ; Parent "BSG--SBNO2^SBNO2^ENSG00000064932.16" ; ccdsid "CCDS45894.1" ; exon_id "ENSE00002286470.1" ; exon_number 2 ; gene_id "BSG--SBNO2^SBNO2^ENSG00000064932.16" ; gene_name SBNO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181875.7" ; havana_transcript "OTTHUMT00000458065.4" ; hgnc_id "HGNC:29158" ; level 2 ; orig_coord_info "chr19,1154184,1154276,-" ; protein_id "ENSP00000354733.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BSG--SBNO2^ENST00000361757.8" ; transcript_name "SBNO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C19orf25--REXO1 HAVANA gene 10775 24898 . + . FI_gene_label "REXO1^ENSG00000079313.15" ; ID "C19orf25--REXO1^REXO1^ENSG00000079313.15" ; ccdsid "CCDS32866.1" ; exon_id "ENSE00002300170.3" ; exon_number 1 ; gene_id "C19orf25--REXO1^REXO1^ENSG00000079313.15" ; gene_name REXO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179991.7" ; havana_transcript "OTTHUMT00000449200.3" ; hgnc_id "HGNC:24616" ; level 2 ; orig_coord_info "chr19,1848202,1848358,-" ; protein_id "ENSP00000170168.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "C19orf25--REXO1^ENST00000170168.9" ; transcript_name "REXO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
C19orf25--REXO1 HAVANA mRNA 10775 24898 . + . FI_gene_label "REXO1^ENSG00000079313.15" ; ID "C19orf25--REXO1^ENST00000170168.9" ; Parent "C19orf25--REXO1^REXO1^ENSG00000079313.15" ; ccdsid "CCDS32866.1" ; exon_id "ENSE00002300170.3" ; exon_number 1 ; gene_id "C19orf25--REXO1^REXO1^ENSG00000079313.15" ; gene_name REXO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179991.7" ; havana_transcript "OTTHUMT00000449200.3" ; hgnc_id "HGNC:24616" ; level 2 ; orig_coord_info "chr19,1848202,1848358,-" ; protein_id "ENSP00000170168.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "C19orf25--REXO1^ENST00000170168.9" ; transcript_name "REXO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C19orf25--REXO1 HAVANA gene 1004 5138 . + . FI_gene_label "C19orf25^ENSG00000119559.17" ; ID "C19orf25--REXO1^C19orf25^ENSG00000119559.17" ; exon_id "ENSE00001694741.2" ; exon_number 2 ; gene_id "C19orf25--REXO1^C19orf25^ENSG00000119559.17" ; gene_name C19orf25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180092.7" ; havana_transcript "OTTHUMT00000449696.1" ; hgnc_id "HGNC:26711" ; level 1 ; orig_coord_info "chr19,1478654,1478903,-" ; protein_id "ENSP00000389254.2" ; tag basic exp_conf ; transcript_id "C19orf25--REXO1^ENST00000427685.2" ; transcript_name "C19orf25-201" ; transcript_support_level 2 ; transcript_type protein_coding
C19orf25--REXO1 HAVANA mRNA 1004 5138 . + . FI_gene_label "C19orf25^ENSG00000119559.17" ; ID "C19orf25--REXO1^ENST00000427685.2" ; Parent "C19orf25--REXO1^C19orf25^ENSG00000119559.17" ; exon_id "ENSE00001694741.2" ; exon_number 2 ; gene_id "C19orf25--REXO1^C19orf25^ENSG00000119559.17" ; gene_name C19orf25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180092.7" ; havana_transcript "OTTHUMT00000449696.1" ; hgnc_id "HGNC:26711" ; level 1 ; orig_coord_info "chr19,1478654,1478903,-" ; protein_id "ENSP00000389254.2" ; tag basic exp_conf ; transcript_id "C19orf25--REXO1^ENST00000427685.2" ; transcript_name "C19orf25-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
C19orf25--SBNO2 HAVANA gene 10775 35069 . + . FI_gene_label "SBNO2^ENSG00000064932.16" ; ID "C19orf25--SBNO2^SBNO2^ENSG00000064932.16" ; ccdsid "CCDS45894.1" ; exon_id "ENSE00002286470.1" ; exon_number 2 ; gene_id "C19orf25--SBNO2^SBNO2^ENSG00000064932.16" ; gene_name SBNO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181875.7" ; havana_transcript "OTTHUMT00000458065.4" ; hgnc_id "HGNC:29158" ; level 2 ; orig_coord_info "chr19,1154184,1154276,-" ; protein_id "ENSP00000354733.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "C19orf25--SBNO2^ENST00000361757.8" ; transcript_name "SBNO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
C19orf25--SBNO2 HAVANA mRNA 10775 35069 . + . FI_gene_label "SBNO2^ENSG00000064932.16" ; ID "C19orf25--SBNO2^ENST00000361757.8" ; Parent "C19orf25--SBNO2^SBNO2^ENSG00000064932.16" ; ccdsid "CCDS45894.1" ; exon_id "ENSE00002286470.1" ; exon_number 2 ; gene_id "C19orf25--SBNO2^SBNO2^ENSG00000064932.16" ; gene_name SBNO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181875.7" ; havana_transcript "OTTHUMT00000458065.4" ; hgnc_id "HGNC:29158" ; level 2 ; orig_coord_info "chr19,1154184,1154276,-" ; protein_id "ENSP00000354733.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "C19orf25--SBNO2^ENST00000361757.8" ; transcript_name "SBNO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C19orf25--SBNO2 HAVANA gene 1004 5138 . + . FI_gene_label "C19orf25^ENSG00000119559.17" ; ID "C19orf25--SBNO2^C19orf25^ENSG00000119559.17" ; exon_id "ENSE00001694741.2" ; exon_number 2 ; gene_id "C19orf25--SBNO2^C19orf25^ENSG00000119559.17" ; gene_name C19orf25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180092.7" ; havana_transcript "OTTHUMT00000449696.1" ; hgnc_id "HGNC:26711" ; level 1 ; orig_coord_info "chr19,1478654,1478903,-" ; protein_id "ENSP00000389254.2" ; tag basic exp_conf ; transcript_id "C19orf25--SBNO2^ENST00000427685.2" ; transcript_name "C19orf25-201" ; transcript_support_level 2 ; transcript_type protein_coding
C19orf25--SBNO2 HAVANA mRNA 1004 5138 . + . FI_gene_label "C19orf25^ENSG00000119559.17" ; ID "C19orf25--SBNO2^ENST00000427685.2" ; Parent "C19orf25--SBNO2^C19orf25^ENSG00000119559.17" ; exon_id "ENSE00001694741.2" ; exon_number 2 ; gene_id "C19orf25--SBNO2^C19orf25^ENSG00000119559.17" ; gene_name C19orf25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180092.7" ; havana_transcript "OTTHUMT00000449696.1" ; hgnc_id "HGNC:26711" ; level 1 ; orig_coord_info "chr19,1478654,1478903,-" ; protein_id "ENSP00000389254.2" ; tag basic exp_conf ; transcript_id "C19orf25--SBNO2^ENST00000427685.2" ; transcript_name "C19orf25-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CD81--OSBPL5 HAVANA gene 2134 15874 . + . FI_gene_label "CD81^ENSG00000110651.12" ; ID "CD81--OSBPL5^CD81^ENSG00000110651.12" ; ccdsid "CCDS7734.1" ; exon_id "ENSE00001227086.6" ; exon_number 1 ; gene_id "CD81--OSBPL5^CD81^ENSG00000110651.12" ; gene_name CD81 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009892.7" ; havana_transcript "OTTHUMT00000027357.4" ; hgnc_id "HGNC:1701" ; level 2 ; orig_coord_info "chr11,2377550,2377615,+" ; protein_id "ENSP00000263645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD81--OSBPL5^ENST00000263645.10" ; transcript_name "CD81-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD81--OSBPL5 HAVANA mRNA 2134 15874 . + . FI_gene_label "CD81^ENSG00000110651.12" ; ID "CD81--OSBPL5^ENST00000263645.10" ; Parent "CD81--OSBPL5^CD81^ENSG00000110651.12" ; ccdsid "CCDS7734.1" ; exon_id "ENSE00001227086.6" ; exon_number 1 ; gene_id "CD81--OSBPL5^CD81^ENSG00000110651.12" ; gene_name CD81 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009892.7" ; havana_transcript "OTTHUMT00000027357.4" ; hgnc_id "HGNC:1701" ; level 2 ; orig_coord_info "chr11,2377550,2377615,+" ; protein_id "ENSP00000263645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD81--OSBPL5^ENST00000263645.10" ; transcript_name "CD81-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD81--OSBPL5 HAVANA gene 20304 44943 . + . FI_gene_label "OSBPL5^ENSG00000021762.20" ; ID "CD81--OSBPL5^OSBPL5^ENSG00000021762.20" ; ccdsid "CCDS31344.1" ; exon_id "ENSE00003679977.1" ; exon_number 2 ; gene_id "CD81--OSBPL5^OSBPL5^ENSG00000021762.20" ; gene_name OSBPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011702.8" ; havana_transcript "OTTHUMT00000032332.3" ; hgnc_id "HGNC:16392" ; level 2 ; orig_coord_info "chr11,3129013,3129148,-" ; protein_id "ENSP00000263650.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD81--OSBPL5^ENST00000263650.12" ; transcript_name "OSBPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD81--OSBPL5 HAVANA mRNA 20304 44943 . + . FI_gene_label "OSBPL5^ENSG00000021762.20" ; ID "CD81--OSBPL5^ENST00000263650.12" ; Parent "CD81--OSBPL5^OSBPL5^ENSG00000021762.20" ; ccdsid "CCDS31344.1" ; exon_id "ENSE00003679977.1" ; exon_number 2 ; gene_id "CD81--OSBPL5^OSBPL5^ENSG00000021762.20" ; gene_name OSBPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011702.8" ; havana_transcript "OTTHUMT00000032332.3" ; hgnc_id "HGNC:16392" ; level 2 ; orig_coord_info "chr11,3129013,3129148,-" ; protein_id "ENSP00000263650.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD81--OSBPL5^ENST00000263650.12" ; transcript_name "OSBPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COL18A1--FAM207BP HAVANA gene 18369 35567 . + . FI_gene_label "COL18A1^ENSG00000182871.16" ; ID "COL18A1--FAM207BP^COL18A1^ENSG00000182871.16" ; exon_id "ENSE00001759875.1" ; exon_number 1 ; gene_id "COL18A1--FAM207BP^COL18A1^ENSG00000182871.16" ; gene_name COL18A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090407.6" ; havana_transcript "OTTHUMT00000206829.1" ; hgnc_id "HGNC:2195" ; level 2 ; orig_coord_info "chr21,45490275,45490346,+" ; protein_id "ENSP00000339118.5" ; tag mRNA_start_NF cds_start_NF ; transcript_id "COL18A1--FAM207BP^ENST00000342220.9" ; transcript_name "COL18A1-201" ; transcript_support_level 2 ; transcript_type protein_coding
COL18A1--FAM207BP HAVANA mRNA 18369 35567 . + . FI_gene_label "COL18A1^ENSG00000182871.16" ; ID "COL18A1--FAM207BP^ENST00000342220.9" ; Parent "COL18A1--FAM207BP^COL18A1^ENSG00000182871.16" ; exon_id "ENSE00001759875.1" ; exon_number 1 ; gene_id "COL18A1--FAM207BP^COL18A1^ENSG00000182871.16" ; gene_name COL18A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090407.6" ; havana_transcript "OTTHUMT00000206829.1" ; hgnc_id "HGNC:2195" ; level 2 ; orig_coord_info "chr21,45490275,45490346,+" ; protein_id "ENSP00000339118.5" ; tag mRNA_start_NF cds_start_NF ; transcript_id "COL18A1--FAM207BP^ENST00000342220.9" ; transcript_name "COL18A1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CRTC1--CERS1 HAVANA gene 1003 22034 . + . FI_gene_label "CRTC1^ENSG00000105662.16" ; ID "CRTC1--CERS1^CRTC1^ENSG00000105662.16" ; ccdsid "CCDS32963.1" ; exon_id "ENSE00003001563.2" ; exon_number 1 ; gene_id "CRTC1--CERS1^CRTC1^ENSG00000105662.16" ; gene_name CRTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183115.5" ; havana_transcript "OTTHUMT00000465151.4" ; hgnc_id "HGNC:16062" ; level 2 ; orig_coord_info "chr19,18683703,18683828,+" ; protein_id "ENSP00000323332.7" ; tag non_canonical_U12 basic MANE_Select appris_principal_4 CCDS ; transcript_id "CRTC1--CERS1^ENST00000321949.13" ; transcript_name "CRTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRTC1--CERS1 HAVANA mRNA 1003 22034 . + . FI_gene_label "CRTC1^ENSG00000105662.16" ; ID "CRTC1--CERS1^ENST00000321949.13" ; Parent "CRTC1--CERS1^CRTC1^ENSG00000105662.16" ; ccdsid "CCDS32963.1" ; exon_id "ENSE00003001563.2" ; exon_number 1 ; gene_id "CRTC1--CERS1^CRTC1^ENSG00000105662.16" ; gene_name CRTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183115.5" ; havana_transcript "OTTHUMT00000465151.4" ; hgnc_id "HGNC:16062" ; level 2 ; orig_coord_info "chr19,18683703,18683828,+" ; protein_id "ENSP00000323332.7" ; tag non_canonical_U12 basic MANE_Select appris_principal_4 CCDS ; transcript_id "CRTC1--CERS1^ENST00000321949.13" ; transcript_name "CRTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRTC1--CERS1 HAVANA gene 25627 31806 . + . FI_gene_label "CERS1^ENSG00000223802.8" ; ID "CRTC1--CERS1^CERS1^ENSG00000223802.8" ; ccdsid "CCDS46021.1" ; exon_id "ENSE00003122184.1" ; exon_number 1 ; gene_id "CRTC1--CERS1^CERS1^ENSG00000223802.8" ; gene_name CERS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183049.2" ; havana_transcript "OTTHUMT00000464795.2" ; hgnc_id "HGNC:14253" ; level 2 ; orig_coord_info "chr19,18895824,18896072,-" ; protein_id "ENSP00000389044.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "CRTC1--CERS1^ENST00000429504.6" ; transcript_name "CERS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRTC1--CERS1 HAVANA mRNA 25627 31806 . + . FI_gene_label "CERS1^ENSG00000223802.8" ; ID "CRTC1--CERS1^ENST00000429504.6" ; Parent "CRTC1--CERS1^CERS1^ENSG00000223802.8" ; ccdsid "CCDS46021.1" ; exon_id "ENSE00003122184.1" ; exon_number 1 ; gene_id "CRTC1--CERS1^CERS1^ENSG00000223802.8" ; gene_name CERS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183049.2" ; havana_transcript "OTTHUMT00000464795.2" ; hgnc_id "HGNC:14253" ; level 2 ; orig_coord_info "chr19,18895824,18896072,-" ; protein_id "ENSP00000389044.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "CRTC1--CERS1^ENST00000429504.6" ; transcript_name "CERS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK1G2--BTBD2 HAVANA gene 18345 29945 . + . FI_gene_label "BTBD2^ENSG00000133243.10" ; ID "CSNK1G2--BTBD2^BTBD2^ENSG00000133243.10" ; ccdsid "CCDS12078.1" ; exon_id "ENSE00001055897.4" ; exon_number 1 ; gene_id "CSNK1G2--BTBD2^BTBD2^ENSG00000133243.10" ; gene_name BTBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180017.7" ; havana_transcript "OTTHUMT00000449300.5" ; hgnc_id "HGNC:15504" ; level 2 ; orig_coord_info "chr19,2015297,2015703,-" ; protein_id "ENSP00000255608.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSNK1G2--BTBD2^ENST00000255608.9" ; transcript_name "BTBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK1G2--BTBD2 HAVANA mRNA 18345 29945 . + . FI_gene_label "BTBD2^ENSG00000133243.10" ; ID "CSNK1G2--BTBD2^ENST00000255608.9" ; Parent "CSNK1G2--BTBD2^BTBD2^ENSG00000133243.10" ; ccdsid "CCDS12078.1" ; exon_id "ENSE00001055897.4" ; exon_number 1 ; gene_id "CSNK1G2--BTBD2^BTBD2^ENSG00000133243.10" ; gene_name BTBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180017.7" ; havana_transcript "OTTHUMT00000449300.5" ; hgnc_id "HGNC:15504" ; level 2 ; orig_coord_info "chr19,2015297,2015703,-" ; protein_id "ENSP00000255608.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSNK1G2--BTBD2^ENST00000255608.9" ; transcript_name "BTBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK1G2--BTBD2 HAVANA gene 1001 11830 . + . FI_gene_label "CSNK1G2^ENSG00000133275.16" ; ID "CSNK1G2--BTBD2^CSNK1G2^ENSG00000133275.16" ; ccdsid "CCDS12077.1" ; exon_id "ENSE00002281299.1" ; exon_number 2 ; gene_id "CSNK1G2--BTBD2^CSNK1G2^ENSG00000133275.16" ; gene_name CSNK1G2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180016.5" ; havana_transcript "OTTHUMT00000449287.3" ; hgnc_id "HGNC:2455" ; level 2 ; orig_coord_info "chr19,1969773,1969959,+" ; protein_id "ENSP00000255641.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSNK1G2--BTBD2^ENST00000255641.13" ; transcript_name "CSNK1G2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK1G2--BTBD2 HAVANA mRNA 1001 11830 . + . FI_gene_label "CSNK1G2^ENSG00000133275.16" ; ID "CSNK1G2--BTBD2^ENST00000255641.13" ; Parent "CSNK1G2--BTBD2^CSNK1G2^ENSG00000133275.16" ; ccdsid "CCDS12077.1" ; exon_id "ENSE00002281299.1" ; exon_number 2 ; gene_id "CSNK1G2--BTBD2^CSNK1G2^ENSG00000133275.16" ; gene_name CSNK1G2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180016.5" ; havana_transcript "OTTHUMT00000449287.3" ; hgnc_id "HGNC:2455" ; level 2 ; orig_coord_info "chr19,1969773,1969959,+" ; protein_id "ENSP00000255641.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSNK1G2--BTBD2^ENST00000255641.13" ; transcript_name "CSNK1G2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK1G2--DAZAP1 HAVANA gene 14848 32599 . + . FI_gene_label "DAZAP1^ENSG00000071626.17" ; ID "CSNK1G2--DAZAP1^DAZAP1^ENSG00000071626.17" ; ccdsid "CCDS12065.1" ; exon_id "ENSE00000000082.2" ; exon_number 1 ; gene_id "CSNK1G2--DAZAP1^DAZAP1^ENSG00000071626.17" ; gene_name DAZAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180058.9" ; havana_transcript "OTTHUMT00000449522.3" ; hgnc_id "HGNC:2683" ; level 2 ; orig_coord_info "chr19,1407774,1407802,+" ; protein_id "ENSP00000233078.4" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "CSNK1G2--DAZAP1^ENST00000233078.9" ; transcript_name "DAZAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK1G2--DAZAP1 HAVANA mRNA 14848 32599 . + . FI_gene_label "DAZAP1^ENSG00000071626.17" ; ID "CSNK1G2--DAZAP1^ENST00000233078.9" ; Parent "CSNK1G2--DAZAP1^DAZAP1^ENSG00000071626.17" ; ccdsid "CCDS12065.1" ; exon_id "ENSE00000000082.2" ; exon_number 1 ; gene_id "CSNK1G2--DAZAP1^DAZAP1^ENSG00000071626.17" ; gene_name DAZAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180058.9" ; havana_transcript "OTTHUMT00000449522.3" ; hgnc_id "HGNC:2683" ; level 2 ; orig_coord_info "chr19,1407774,1407802,+" ; protein_id "ENSP00000233078.4" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "CSNK1G2--DAZAP1^ENST00000233078.9" ; transcript_name "DAZAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK1G2--DAZAP1 HAVANA gene 1001 11830 . + . FI_gene_label "CSNK1G2^ENSG00000133275.16" ; ID "CSNK1G2--DAZAP1^CSNK1G2^ENSG00000133275.16" ; ccdsid "CCDS12077.1" ; exon_id "ENSE00002281299.1" ; exon_number 2 ; gene_id "CSNK1G2--DAZAP1^CSNK1G2^ENSG00000133275.16" ; gene_name CSNK1G2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180016.5" ; havana_transcript "OTTHUMT00000449287.3" ; hgnc_id "HGNC:2455" ; level 2 ; orig_coord_info "chr19,1969773,1969959,+" ; protein_id "ENSP00000255641.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSNK1G2--DAZAP1^ENST00000255641.13" ; transcript_name "CSNK1G2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK1G2--DAZAP1 HAVANA mRNA 1001 11830 . + . FI_gene_label "CSNK1G2^ENSG00000133275.16" ; ID "CSNK1G2--DAZAP1^ENST00000255641.13" ; Parent "CSNK1G2--DAZAP1^CSNK1G2^ENSG00000133275.16" ; ccdsid "CCDS12077.1" ; exon_id "ENSE00002281299.1" ; exon_number 2 ; gene_id "CSNK1G2--DAZAP1^CSNK1G2^ENSG00000133275.16" ; gene_name CSNK1G2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180016.5" ; havana_transcript "OTTHUMT00000449287.3" ; hgnc_id "HGNC:2455" ; level 2 ; orig_coord_info "chr19,1969773,1969959,+" ; protein_id "ENSP00000255641.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSNK1G2--DAZAP1^ENST00000255641.13" ; transcript_name "CSNK1G2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CTBP1--MAEA HAVANA gene 24204 44004 . + . FI_gene_label "MAEA^ENSG00000090316.16" ; ID "CTBP1--MAEA^MAEA^ENSG00000090316.16" ; ccdsid "CCDS33937.1" ; exon_id "ENSE00001559530.1" ; exon_number 1 ; gene_id "CTBP1--MAEA^MAEA^ENSG00000090316.16" ; gene_name MAEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000160169.8" ; havana_transcript "OTTHUMT00000359513.1" ; hgnc_id "HGNC:13731" ; level 2 ; orig_coord_info "chr4,1289914,1289982,+" ; protein_id "ENSP00000264750.6" ; tag basic CCDS ; transcript_id "CTBP1--MAEA^ENST00000264750.10" ; transcript_name "MAEA-201" ; transcript_support_level 2 ; transcript_type protein_coding
CTBP1--MAEA HAVANA mRNA 24204 44004 . + . FI_gene_label "MAEA^ENSG00000090316.16" ; ID "CTBP1--MAEA^ENST00000264750.10" ; Parent "CTBP1--MAEA^MAEA^ENSG00000090316.16" ; ccdsid "CCDS33937.1" ; exon_id "ENSE00001559530.1" ; exon_number 1 ; gene_id "CTBP1--MAEA^MAEA^ENSG00000090316.16" ; gene_name MAEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000160169.8" ; havana_transcript "OTTHUMT00000359513.1" ; hgnc_id "HGNC:13731" ; level 2 ; orig_coord_info "chr4,1289914,1289982,+" ; protein_id "ENSP00000264750.6" ; tag basic CCDS ; transcript_id "CTBP1--MAEA^ENST00000264750.10" ; transcript_name "MAEA-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CTBP1--MAEA HAVANA gene 1817 21196 . + . FI_gene_label "CTBP1^ENSG00000159692.16" ; ID "CTBP1--MAEA^CTBP1^ENSG00000159692.16" ; ccdsid "CCDS3348.1" ; exon_id "ENSE00001945022.1" ; exon_number 1 ; gene_id "CTBP1--MAEA^CTBP1^ENSG00000159692.16" ; gene_name CTBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089259.9" ; havana_transcript "OTTHUMT00000202938.1" ; hgnc_id "HGNC:2494" ; level 2 ; orig_coord_info "chr4,1248916,1248955,-" ; protein_id "ENSP00000290921.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "CTBP1--MAEA^ENST00000290921.10" ; transcript_name "CTBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CTBP1--MAEA HAVANA mRNA 1817 21196 . + . FI_gene_label "CTBP1^ENSG00000159692.16" ; ID "CTBP1--MAEA^ENST00000290921.10" ; Parent "CTBP1--MAEA^CTBP1^ENSG00000159692.16" ; ccdsid "CCDS3348.1" ; exon_id "ENSE00001945022.1" ; exon_number 1 ; gene_id "CTBP1--MAEA^CTBP1^ENSG00000159692.16" ; gene_name CTBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089259.9" ; havana_transcript "OTTHUMT00000202938.1" ; hgnc_id "HGNC:2494" ; level 2 ; orig_coord_info "chr4,1248916,1248955,-" ; protein_id "ENSP00000290921.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "CTBP1--MAEA^ENST00000290921.10" ; transcript_name "CTBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DAZAP1--SBNO2 HAVANA gene 1018 18769 . + . FI_gene_label "DAZAP1^ENSG00000071626.17" ; ID "DAZAP1--SBNO2^DAZAP1^ENSG00000071626.17" ; ccdsid "CCDS12065.1" ; exon_id "ENSE00000000082.2" ; exon_number 1 ; gene_id "DAZAP1--SBNO2^DAZAP1^ENSG00000071626.17" ; gene_name DAZAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180058.9" ; havana_transcript "OTTHUMT00000449522.3" ; hgnc_id "HGNC:2683" ; level 2 ; orig_coord_info "chr19,1407774,1407802,+" ; protein_id "ENSP00000233078.4" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "DAZAP1--SBNO2^ENST00000233078.9" ; transcript_name "DAZAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DAZAP1--SBNO2 HAVANA mRNA 1018 18769 . + . FI_gene_label "DAZAP1^ENSG00000071626.17" ; ID "DAZAP1--SBNO2^ENST00000233078.9" ; Parent "DAZAP1--SBNO2^DAZAP1^ENSG00000071626.17" ; ccdsid "CCDS12065.1" ; exon_id "ENSE00000000082.2" ; exon_number 1 ; gene_id "DAZAP1--SBNO2^DAZAP1^ENSG00000071626.17" ; gene_name DAZAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180058.9" ; havana_transcript "OTTHUMT00000449522.3" ; hgnc_id "HGNC:2683" ; level 2 ; orig_coord_info "chr19,1407774,1407802,+" ; protein_id "ENSP00000233078.4" ; tag NAGNAG_splice_site basic MANE_Select appris_principal_4 CCDS ; transcript_id "DAZAP1--SBNO2^ENST00000233078.9" ; transcript_name "DAZAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DAZAP1--SBNO2 HAVANA gene 21773 46067 . + . FI_gene_label "SBNO2^ENSG00000064932.16" ; ID "DAZAP1--SBNO2^SBNO2^ENSG00000064932.16" ; ccdsid "CCDS45894.1" ; exon_id "ENSE00002286470.1" ; exon_number 2 ; gene_id "DAZAP1--SBNO2^SBNO2^ENSG00000064932.16" ; gene_name SBNO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181875.7" ; havana_transcript "OTTHUMT00000458065.4" ; hgnc_id "HGNC:29158" ; level 2 ; orig_coord_info "chr19,1154184,1154276,-" ; protein_id "ENSP00000354733.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DAZAP1--SBNO2^ENST00000361757.8" ; transcript_name "SBNO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DAZAP1--SBNO2 HAVANA mRNA 21773 46067 . + . FI_gene_label "SBNO2^ENSG00000064932.16" ; ID "DAZAP1--SBNO2^ENST00000361757.8" ; Parent "DAZAP1--SBNO2^SBNO2^ENSG00000064932.16" ; ccdsid "CCDS45894.1" ; exon_id "ENSE00002286470.1" ; exon_number 2 ; gene_id "DAZAP1--SBNO2^SBNO2^ENSG00000064932.16" ; gene_name SBNO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181875.7" ; havana_transcript "OTTHUMT00000458065.4" ; hgnc_id "HGNC:29158" ; level 2 ; orig_coord_info "chr19,1154184,1154276,-" ; protein_id "ENSP00000354733.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "DAZAP1--SBNO2^ENST00000361757.8" ; transcript_name "SBNO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCUN1D2--AL353765.1 HAVANA gene 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--AL353765.1^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--AL353765.1^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--AL353765.1^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DCUN1D2--AL353765.1 HAVANA mRNA 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--AL353765.1^ENST00000332592.7" ; Parent "DCUN1D2--AL353765.1^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--AL353765.1^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--AL353765.1^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DCUN1D2--DZIP1 HAVANA gene 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--DZIP1^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--DZIP1^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--DZIP1^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DCUN1D2--DZIP1 HAVANA mRNA 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--DZIP1^ENST00000332592.7" ; Parent "DCUN1D2--DZIP1^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--DZIP1^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--DZIP1^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DCUN1D2--DZIP1 ENSEMBL gene 17847 44775 . + . FI_gene_label "DZIP1^ENSG00000134874.18" ; ID "DCUN1D2--DZIP1^DZIP1^ENSG00000134874.18" ; ccdsid "CCDS9478.1" ; exon_id "ENSE00003635983.1" ; exon_number 2 ; gene_id "DCUN1D2--DZIP1^DZIP1^ENSG00000134874.18" ; gene_name DZIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017224.7" ; hgnc_id "HGNC:20908" ; level 3 ; orig_coord_info "chr13,95641994,95642029,-" ; protein_id "ENSP00000257312.5" ; tag basic appris_principal_4 CCDS ; transcript_id "DCUN1D2--DZIP1^ENST00000347108.7" ; transcript_name "DZIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
DCUN1D2--DZIP1 ENSEMBL mRNA 17847 44775 . + . FI_gene_label "DZIP1^ENSG00000134874.18" ; ID "DCUN1D2--DZIP1^ENST00000347108.7" ; Parent "DCUN1D2--DZIP1^DZIP1^ENSG00000134874.18" ; ccdsid "CCDS9478.1" ; exon_id "ENSE00003635983.1" ; exon_number 2 ; gene_id "DCUN1D2--DZIP1^DZIP1^ENSG00000134874.18" ; gene_name DZIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017224.7" ; hgnc_id "HGNC:20908" ; level 3 ; orig_coord_info "chr13,95641994,95642029,-" ; protein_id "ENSP00000257312.5" ; tag basic appris_principal_4 CCDS ; transcript_id "DCUN1D2--DZIP1^ENST00000347108.7" ; transcript_name "DZIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DCUN1D2--RAC1P8 HAVANA gene 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--RAC1P8^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--RAC1P8^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--RAC1P8^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DCUN1D2--RAC1P8 HAVANA mRNA 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--RAC1P8^ENST00000332592.7" ; Parent "DCUN1D2--RAC1P8^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--RAC1P8^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--RAC1P8^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DLGAP3--TMTC4 ENSEMBL gene 4456 14129 . + . FI_gene_label "DLGAP3^ENSG00000116544.12" ; ID "DLGAP3--TMTC4^DLGAP3^ENSG00000116544.12" ; ccdsid "CCDS30670.1" ; exon_id "ENSE00001460327.1" ; exon_number 1 ; gene_id "DLGAP3--TMTC4^DLGAP3^ENSG00000116544.12" ; gene_name DLGAP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004049.2" ; hgnc_id "HGNC:30368" ; level 3 ; orig_coord_info "chr1,34904277,34905383,-" ; protein_id "ENSP00000235180.4" ; tag basic appris_principal_1 CCDS ; transcript_id "DLGAP3--TMTC4^ENST00000235180.4" ; transcript_name "DLGAP3-201" ; transcript_support_level 2 ; transcript_type protein_coding
DLGAP3--TMTC4 ENSEMBL mRNA 4456 14129 . + . FI_gene_label "DLGAP3^ENSG00000116544.12" ; ID "DLGAP3--TMTC4^ENST00000235180.4" ; Parent "DLGAP3--TMTC4^DLGAP3^ENSG00000116544.12" ; ccdsid "CCDS30670.1" ; exon_id "ENSE00001460327.1" ; exon_number 1 ; gene_id "DLGAP3--TMTC4^DLGAP3^ENSG00000116544.12" ; gene_name DLGAP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000004049.2" ; hgnc_id "HGNC:30368" ; level 3 ; orig_coord_info "chr1,34904277,34905383,-" ; protein_id "ENSP00000235180.4" ; tag basic appris_principal_1 CCDS ; transcript_id "DLGAP3--TMTC4^ENST00000235180.4" ; transcript_name "DLGAP3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DLGAP3--TMTC4 HAVANA gene 17449 37841 . + . FI_gene_label "TMTC4^ENSG00000125247.16" ; ID "DLGAP3--TMTC4^TMTC4^ENSG00000125247.16" ; ccdsid "CCDS66575.1" ; exon_id "ENSE00003794194.1" ; exon_number 2 ; gene_id "DLGAP3--TMTC4^TMTC4^ENSG00000125247.16" ; gene_name TMTC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017289.6" ; havana_transcript "OTTHUMT00000355027.1" ; hgnc_id "HGNC:25904" ; level 1 ; orig_coord_info "chr13,100668579,100668740,-" ; protein_id "ENSP00000365409.2" ; tag basic exp_conf CCDS ; transcript_id "DLGAP3--TMTC4^ENST00000328767.9" ; transcript_name "TMTC4-201" ; transcript_support_level 2 ; transcript_type protein_coding
DLGAP3--TMTC4 HAVANA mRNA 17449 37841 . + . FI_gene_label "TMTC4^ENSG00000125247.16" ; ID "DLGAP3--TMTC4^ENST00000328767.9" ; Parent "DLGAP3--TMTC4^TMTC4^ENSG00000125247.16" ; ccdsid "CCDS66575.1" ; exon_id "ENSE00003794194.1" ; exon_number 2 ; gene_id "DLGAP3--TMTC4^TMTC4^ENSG00000125247.16" ; gene_name TMTC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017289.6" ; havana_transcript "OTTHUMT00000355027.1" ; hgnc_id "HGNC:25904" ; level 1 ; orig_coord_info "chr13,100668579,100668740,-" ; protein_id "ENSP00000365409.2" ; tag basic exp_conf CCDS ; transcript_id "DLGAP3--TMTC4^ENST00000328767.9" ; transcript_name "TMTC4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DZIP1--DLEU1 ENSEMBL gene 2444 29372 . + . FI_gene_label "DZIP1^ENSG00000134874.18" ; ID "DZIP1--DLEU1^DZIP1^ENSG00000134874.18" ; ccdsid "CCDS9478.1" ; exon_id "ENSE00003635983.1" ; exon_number 2 ; gene_id "DZIP1--DLEU1^DZIP1^ENSG00000134874.18" ; gene_name DZIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017224.7" ; hgnc_id "HGNC:20908" ; level 3 ; orig_coord_info "chr13,95641994,95642029,-" ; protein_id "ENSP00000257312.5" ; tag basic appris_principal_4 CCDS ; transcript_id "DZIP1--DLEU1^ENST00000347108.7" ; transcript_name "DZIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
DZIP1--DLEU1 ENSEMBL mRNA 2444 29372 . + . FI_gene_label "DZIP1^ENSG00000134874.18" ; ID "DZIP1--DLEU1^ENST00000347108.7" ; Parent "DZIP1--DLEU1^DZIP1^ENSG00000134874.18" ; ccdsid "CCDS9478.1" ; exon_id "ENSE00003635983.1" ; exon_number 2 ; gene_id "DZIP1--DLEU1^DZIP1^ENSG00000134874.18" ; gene_name DZIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017224.7" ; hgnc_id "HGNC:20908" ; level 3 ; orig_coord_info "chr13,95641994,95642029,-" ; protein_id "ENSP00000257312.5" ; tag basic appris_principal_4 CCDS ; transcript_id "DZIP1--DLEU1^ENST00000347108.7" ; transcript_name "DZIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FAM53A--CTBP1 HAVANA gene 15120 34499 . + . FI_gene_label "CTBP1^ENSG00000159692.16" ; ID "FAM53A--CTBP1^CTBP1^ENSG00000159692.16" ; ccdsid "CCDS3348.1" ; exon_id "ENSE00001945022.1" ; exon_number 1 ; gene_id "FAM53A--CTBP1^CTBP1^ENSG00000159692.16" ; gene_name CTBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089259.9" ; havana_transcript "OTTHUMT00000202938.1" ; hgnc_id "HGNC:2494" ; level 2 ; orig_coord_info "chr4,1248916,1248955,-" ; protein_id "ENSP00000290921.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "FAM53A--CTBP1^ENST00000290921.10" ; transcript_name "CTBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM53A--CTBP1 HAVANA mRNA 15120 34499 . + . FI_gene_label "CTBP1^ENSG00000159692.16" ; ID "FAM53A--CTBP1^ENST00000290921.10" ; Parent "FAM53A--CTBP1^CTBP1^ENSG00000159692.16" ; ccdsid "CCDS3348.1" ; exon_id "ENSE00001945022.1" ; exon_number 1 ; gene_id "FAM53A--CTBP1^CTBP1^ENSG00000159692.16" ; gene_name CTBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089259.9" ; havana_transcript "OTTHUMT00000202938.1" ; hgnc_id "HGNC:2494" ; level 2 ; orig_coord_info "chr4,1248916,1248955,-" ; protein_id "ENSP00000290921.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "FAM53A--CTBP1^ENST00000290921.10" ; transcript_name "CTBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM53A--CTBP1 HAVANA gene 1001 10106 . + . FI_gene_label "FAM53A^ENSG00000174137.13" ; ID "FAM53A--CTBP1^FAM53A^ENSG00000174137.13" ; ccdsid "CCDS33939.1" ; exon_id "ENSE00002054040.1" ; exon_number 2 ; gene_id "FAM53A--CTBP1^FAM53A^ENSG00000174137.13" ; gene_name FAM53A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159855.6" ; hgnc_id "HGNC:31860" ; level 2 ; orig_coord_info "chr4,1668667,1668741,-" ; protein_id "ENSP00000310057.6" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "FAM53A--CTBP1^ENST00000308132.10" ; transcript_name "FAM53A-201" ; transcript_support_level 2 ; transcript_type protein_coding
FAM53A--CTBP1 HAVANA mRNA 1001 10106 . + . FI_gene_label "FAM53A^ENSG00000174137.13" ; ID "FAM53A--CTBP1^ENST00000308132.10" ; Parent "FAM53A--CTBP1^FAM53A^ENSG00000174137.13" ; ccdsid "CCDS33939.1" ; exon_id "ENSE00002054040.1" ; exon_number 2 ; gene_id "FAM53A--CTBP1^FAM53A^ENSG00000174137.13" ; gene_name FAM53A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159855.6" ; hgnc_id "HGNC:31860" ; level 2 ; orig_coord_info "chr4,1668667,1668741,-" ; protein_id "ENSP00000310057.6" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "FAM53A--CTBP1^ENST00000308132.10" ; transcript_name "FAM53A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GNG7--BTBD2 HAVANA gene 18061 29661 . + . FI_gene_label "BTBD2^ENSG00000133243.10" ; ID "GNG7--BTBD2^BTBD2^ENSG00000133243.10" ; ccdsid "CCDS12078.1" ; exon_id "ENSE00001055897.4" ; exon_number 1 ; gene_id "GNG7--BTBD2^BTBD2^ENSG00000133243.10" ; gene_name BTBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180017.7" ; havana_transcript "OTTHUMT00000449300.5" ; hgnc_id "HGNC:15504" ; level 2 ; orig_coord_info "chr19,2015297,2015703,-" ; protein_id "ENSP00000255608.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--BTBD2^ENST00000255608.9" ; transcript_name "BTBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNG7--BTBD2 HAVANA mRNA 18061 29661 . + . FI_gene_label "BTBD2^ENSG00000133243.10" ; ID "GNG7--BTBD2^ENST00000255608.9" ; Parent "GNG7--BTBD2^BTBD2^ENSG00000133243.10" ; ccdsid "CCDS12078.1" ; exon_id "ENSE00001055897.4" ; exon_number 1 ; gene_id "GNG7--BTBD2^BTBD2^ENSG00000133243.10" ; gene_name BTBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180017.7" ; havana_transcript "OTTHUMT00000449300.5" ; hgnc_id "HGNC:15504" ; level 2 ; orig_coord_info "chr19,2015297,2015703,-" ; protein_id "ENSP00000255608.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--BTBD2^ENST00000255608.9" ; transcript_name "BTBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNG7--BTBD2 HAVANA gene 1001 11546 . + . FI_gene_label "GNG7^ENSG00000176533.13" ; ID "GNG7--BTBD2^GNG7^ENSG00000176533.13" ; ccdsid "CCDS12091.1" ; exon_id "ENSE00002370155.1" ; exon_number 4 ; gene_id "GNG7--BTBD2^GNG7^ENSG00000176533.13" ; gene_name GNG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180435.3" ; havana_transcript "OTTHUMT00000451345.2" ; hgnc_id "HGNC:4410" ; level 2 ; orig_coord_info "chr19,2520608,2520688,-" ; protein_id "ENSP00000371594.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--BTBD2^ENST00000382159.8" ; transcript_name "GNG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNG7--BTBD2 HAVANA mRNA 1001 11546 . + . FI_gene_label "GNG7^ENSG00000176533.13" ; ID "GNG7--BTBD2^ENST00000382159.8" ; Parent "GNG7--BTBD2^GNG7^ENSG00000176533.13" ; ccdsid "CCDS12091.1" ; exon_id "ENSE00002370155.1" ; exon_number 4 ; gene_id "GNG7--BTBD2^GNG7^ENSG00000176533.13" ; gene_name GNG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180435.3" ; havana_transcript "OTTHUMT00000451345.2" ; hgnc_id "HGNC:4410" ; level 2 ; orig_coord_info "chr19,2520608,2520688,-" ; protein_id "ENSP00000371594.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--BTBD2^ENST00000382159.8" ; transcript_name "GNG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNG7--GNA11 HAVANA gene 14547 26018 . + . FI_gene_label "GNA11^ENSG00000088256.9" ; ID "GNG7--GNA11^GNA11^ENSG00000088256.9" ; ccdsid "CCDS12103.1" ; exon_id "ENSE00000859533.4" ; exon_number 1 ; gene_id "GNG7--GNA11^GNA11^ENSG00000088256.9" ; gene_name GNA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180631.7" ; havana_transcript "OTTHUMT00000452261.4" ; hgnc_id "HGNC:4379" ; level 2 ; orig_coord_info "chr19,3094652,3094787,+" ; protein_id "ENSP00000078429.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--GNA11^ENST00000078429.9" ; transcript_name "GNA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNG7--GNA11 HAVANA mRNA 14547 26018 . + . FI_gene_label "GNA11^ENSG00000088256.9" ; ID "GNG7--GNA11^ENST00000078429.9" ; Parent "GNG7--GNA11^GNA11^ENSG00000088256.9" ; ccdsid "CCDS12103.1" ; exon_id "ENSE00000859533.4" ; exon_number 1 ; gene_id "GNG7--GNA11^GNA11^ENSG00000088256.9" ; gene_name GNA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180631.7" ; havana_transcript "OTTHUMT00000452261.4" ; hgnc_id "HGNC:4379" ; level 2 ; orig_coord_info "chr19,3094652,3094787,+" ; protein_id "ENSP00000078429.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--GNA11^ENST00000078429.9" ; transcript_name "GNA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNG7--GNA11 HAVANA gene 1001 11546 . + . FI_gene_label "GNG7^ENSG00000176533.13" ; ID "GNG7--GNA11^GNG7^ENSG00000176533.13" ; ccdsid "CCDS12091.1" ; exon_id "ENSE00002370155.1" ; exon_number 4 ; gene_id "GNG7--GNA11^GNG7^ENSG00000176533.13" ; gene_name GNG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180435.3" ; havana_transcript "OTTHUMT00000451345.2" ; hgnc_id "HGNC:4410" ; level 2 ; orig_coord_info "chr19,2520608,2520688,-" ; protein_id "ENSP00000371594.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--GNA11^ENST00000382159.8" ; transcript_name "GNG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNG7--GNA11 HAVANA mRNA 1001 11546 . + . FI_gene_label "GNG7^ENSG00000176533.13" ; ID "GNG7--GNA11^ENST00000382159.8" ; Parent "GNG7--GNA11^GNG7^ENSG00000176533.13" ; ccdsid "CCDS12091.1" ; exon_id "ENSE00002370155.1" ; exon_number 4 ; gene_id "GNG7--GNA11^GNG7^ENSG00000176533.13" ; gene_name GNG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180435.3" ; havana_transcript "OTTHUMT00000451345.2" ; hgnc_id "HGNC:4410" ; level 2 ; orig_coord_info "chr19,2520608,2520688,-" ; protein_id "ENSP00000371594.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNG7--GNA11^ENST00000382159.8" ; transcript_name "GNG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2F2--AL354994.1 HAVANA gene 1001 13608 . + . FI_gene_label "GTF2F2^ENSG00000188342.12" ; ID "GTF2F2--AL354994.1^GTF2F2^ENSG00000188342.12" ; ccdsid "CCDS9395.1" ; exon_id "ENSE00001479865.5" ; exon_number 1 ; gene_id "GTF2F2--AL354994.1^GTF2F2^ENSG00000188342.12" ; gene_name GTF2F2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016849.5" ; havana_transcript "OTTHUMT00000044767.5" ; hgnc_id "HGNC:4653" ; level 2 ; orig_coord_info "chr13,45120656,45120721,+" ; protein_id "ENSP00000340823.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2F2--AL354994.1^ENST00000340473.8" ; transcript_name "GTF2F2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2F2--AL354994.1 HAVANA mRNA 1001 13608 . + . FI_gene_label "GTF2F2^ENSG00000188342.12" ; ID "GTF2F2--AL354994.1^ENST00000340473.8" ; Parent "GTF2F2--AL354994.1^GTF2F2^ENSG00000188342.12" ; ccdsid "CCDS9395.1" ; exon_id "ENSE00001479865.5" ; exon_number 1 ; gene_id "GTF2F2--AL354994.1^GTF2F2^ENSG00000188342.12" ; gene_name GTF2F2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016849.5" ; havana_transcript "OTTHUMT00000044767.5" ; hgnc_id "HGNC:4653" ; level 2 ; orig_coord_info "chr13,45120656,45120721,+" ; protein_id "ENSP00000340823.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2F2--AL354994.1^ENST00000340473.8" ; transcript_name "GTF2F2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGFL1P2--HIF3A HAVANA gene 5593 23988 . + . FI_gene_label "HIF3A^ENSG00000124440.16" ; ID "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; ccdsid "CCDS42580.2" ; exon_id "ENSE00003567095.1" ; exon_number 2 ; gene_id "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; gene_name HIF3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000141296.6" ; havana_transcript "OTTHUMT00000384749.1" ; hgnc_id "HGNC:15825" ; level 2 ; orig_coord_info "chr19,46303933,46304088,+" ; protein_id "ENSP00000244303.6" ; tag basic CCDS ; transcript_id "IGFL1P2--HIF3A^ENST00000244303.10" ; transcript_name "HIF3A-202" ; transcript_support_level 2 ; transcript_type protein_coding
IGFL1P2--HIF3A HAVANA mRNA 5593 23988 . + . FI_gene_label "HIF3A^ENSG00000124440.16" ; ID "IGFL1P2--HIF3A^ENST00000244303.10" ; Parent "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; ccdsid "CCDS42580.2" ; exon_id "ENSE00003567095.1" ; exon_number 2 ; gene_id "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; gene_name HIF3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000141296.6" ; havana_transcript "OTTHUMT00000384749.1" ; hgnc_id "HGNC:15825" ; level 2 ; orig_coord_info "chr19,46303933,46304088,+" ; protein_id "ENSP00000244303.6" ; tag basic CCDS ; transcript_id "IGFL1P2--HIF3A^ENST00000244303.10" ; transcript_name "HIF3A-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
IVNS1ABP--SWT1 HAVANA gene 2517 5381 . + . FI_gene_label "IVNS1ABP^ENSG00000116679.16" ; ID "IVNS1ABP--SWT1^IVNS1ABP^ENSG00000116679.16" ; exon_id "ENSE00003624186.1" ; exon_number 2 ; gene_id "IVNS1ABP--SWT1^IVNS1ABP^ENSG00000116679.16" ; gene_name IVNS1ABP ; gene_type protein_coding ; havana_gene "OTTHUMG00000035384.2" ; havana_transcript "OTTHUMT00000085779.1" ; hgnc_id "HGNC:16951" ; level 2 ; orig_coord_info "chr1,185309383,185309493,-" ; protein_id "ENSP00000356467.1" ; tag basic ; transcript_id "IVNS1ABP--SWT1^ENST00000367497.1" ; transcript_name "IVNS1ABP-201" ; transcript_support_level 5 ; transcript_type protein_coding
IVNS1ABP--SWT1 HAVANA mRNA 2517 5381 . + . FI_gene_label "IVNS1ABP^ENSG00000116679.16" ; ID "IVNS1ABP--SWT1^ENST00000367497.1" ; Parent "IVNS1ABP--SWT1^IVNS1ABP^ENSG00000116679.16" ; exon_id "ENSE00003624186.1" ; exon_number 2 ; gene_id "IVNS1ABP--SWT1^IVNS1ABP^ENSG00000116679.16" ; gene_name IVNS1ABP ; gene_type protein_coding ; havana_gene "OTTHUMG00000035384.2" ; havana_transcript "OTTHUMT00000085779.1" ; hgnc_id "HGNC:16951" ; level 2 ; orig_coord_info "chr1,185309383,185309493,-" ; protein_id "ENSP00000356467.1" ; tag basic ; transcript_id "IVNS1ABP--SWT1^ENST00000367497.1" ; transcript_name "IVNS1ABP-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IVNS1ABP--SWT1 HAVANA gene 16940 38487 . + . FI_gene_label "SWT1^ENSG00000116668.13" ; ID "IVNS1ABP--SWT1^SWT1^ENSG00000116668.13" ; ccdsid "CCDS1367.1" ; exon_id "ENSE00001444785.1" ; exon_number 2 ; gene_id "IVNS1ABP--SWT1^SWT1^ENSG00000116668.13" ; gene_name SWT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035390.3" ; havana_transcript "OTTHUMT00000085790.2" ; hgnc_id "HGNC:16785" ; level 2 ; orig_coord_info "chr1,185160842,185160925,+" ; protein_id "ENSP00000356470.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IVNS1ABP--SWT1^ENST00000367500.9" ; transcript_name "SWT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IVNS1ABP--SWT1 HAVANA mRNA 16940 38487 . + . FI_gene_label "SWT1^ENSG00000116668.13" ; ID "IVNS1ABP--SWT1^ENST00000367500.9" ; Parent "IVNS1ABP--SWT1^SWT1^ENSG00000116668.13" ; ccdsid "CCDS1367.1" ; exon_id "ENSE00001444785.1" ; exon_number 2 ; gene_id "IVNS1ABP--SWT1^SWT1^ENSG00000116668.13" ; gene_name SWT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035390.3" ; havana_transcript "OTTHUMT00000085790.2" ; hgnc_id "HGNC:16785" ; level 2 ; orig_coord_info "chr1,185160842,185160925,+" ; protein_id "ENSP00000356470.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IVNS1ABP--SWT1^ENST00000367500.9" ; transcript_name "SWT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KPNA3--LGMNP1 HAVANA gene 1001 15880 . + . FI_gene_label "KPNA3^ENSG00000102753.10" ; ID "KPNA3--LGMNP1^KPNA3^ENSG00000102753.10" ; ccdsid "CCDS9421.1" ; exon_id "ENSE00001307048.2" ; exon_number 1 ; gene_id "KPNA3--LGMNP1^KPNA3^ENSG00000102753.10" ; gene_name KPNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016922.4" ; havana_transcript "OTTHUMT00000044939.4" ; hgnc_id "HGNC:6396" ; level 2 ; orig_coord_info "chr13,49792438,49792506,-" ; protein_id "ENSP00000261667.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA3--LGMNP1^ENST00000261667.8" ; transcript_name "KPNA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
KPNA3--LGMNP1 HAVANA mRNA 1001 15880 . + . FI_gene_label "KPNA3^ENSG00000102753.10" ; ID "KPNA3--LGMNP1^ENST00000261667.8" ; Parent "KPNA3--LGMNP1^KPNA3^ENSG00000102753.10" ; ccdsid "CCDS9421.1" ; exon_id "ENSE00001307048.2" ; exon_number 1 ; gene_id "KPNA3--LGMNP1^KPNA3^ENSG00000102753.10" ; gene_name KPNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016922.4" ; havana_transcript "OTTHUMT00000044939.4" ; hgnc_id "HGNC:6396" ; level 2 ; orig_coord_info "chr13,49792438,49792506,-" ; protein_id "ENSP00000261667.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA3--LGMNP1^ENST00000261667.8" ; transcript_name "KPNA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KPNA3--STARP1 HAVANA gene 1001 15880 . + . FI_gene_label "KPNA3^ENSG00000102753.10" ; ID "KPNA3--STARP1^KPNA3^ENSG00000102753.10" ; ccdsid "CCDS9421.1" ; exon_id "ENSE00001307048.2" ; exon_number 1 ; gene_id "KPNA3--STARP1^KPNA3^ENSG00000102753.10" ; gene_name KPNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016922.4" ; havana_transcript "OTTHUMT00000044939.4" ; hgnc_id "HGNC:6396" ; level 2 ; orig_coord_info "chr13,49792438,49792506,-" ; protein_id "ENSP00000261667.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA3--STARP1^ENST00000261667.8" ; transcript_name "KPNA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
KPNA3--STARP1 HAVANA mRNA 1001 15880 . + . FI_gene_label "KPNA3^ENSG00000102753.10" ; ID "KPNA3--STARP1^ENST00000261667.8" ; Parent "KPNA3--STARP1^KPNA3^ENSG00000102753.10" ; ccdsid "CCDS9421.1" ; exon_id "ENSE00001307048.2" ; exon_number 1 ; gene_id "KPNA3--STARP1^KPNA3^ENSG00000102753.10" ; gene_name KPNA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016922.4" ; havana_transcript "OTTHUMT00000044939.4" ; hgnc_id "HGNC:6396" ; level 2 ; orig_coord_info "chr13,49792438,49792506,-" ; protein_id "ENSP00000261667.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KPNA3--STARP1^ENST00000261667.8" ; transcript_name "KPNA3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LATS2--PAN3 HAVANA gene 17653 40893 . + . FI_gene_label "PAN3^ENSG00000152520.14" ; ID "LATS2--PAN3^PAN3^ENSG00000152520.14" ; ccdsid "CCDS9329.2" ; exon_id "ENSE00003572843.2" ; exon_number 1 ; gene_id "LATS2--PAN3^PAN3^ENSG00000152520.14" ; gene_name PAN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016645.6" ; havana_transcript "OTTHUMT00000044318.5" ; hgnc_id "HGNC:29991" ; level 2 ; orig_coord_info "chr13,28138658,28139087,+" ; protein_id "ENSP00000370345.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LATS2--PAN3^ENST00000380958.8" ; transcript_name "PAN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
LATS2--PAN3 HAVANA mRNA 17653 40893 . + . FI_gene_label "PAN3^ENSG00000152520.14" ; ID "LATS2--PAN3^ENST00000380958.8" ; Parent "LATS2--PAN3^PAN3^ENSG00000152520.14" ; ccdsid "CCDS9329.2" ; exon_id "ENSE00003572843.2" ; exon_number 1 ; gene_id "LATS2--PAN3^PAN3^ENSG00000152520.14" ; gene_name PAN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016645.6" ; havana_transcript "OTTHUMT00000044318.5" ; hgnc_id "HGNC:29991" ; level 2 ; orig_coord_info "chr13,28138658,28139087,+" ; protein_id "ENSP00000370345.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LATS2--PAN3^ENST00000380958.8" ; transcript_name "PAN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LATS2--PAN3 HAVANA gene 1001 14613 . + . FI_gene_label "LATS2^ENSG00000150457.9" ; ID "LATS2--PAN3^LATS2^ENSG00000150457.9" ; ccdsid "CCDS9294.1" ; exon_id "ENSE00001492905.1" ; exon_number 2 ; gene_id "LATS2--PAN3^LATS2^ENSG00000150457.9" ; gene_name LATS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016531.2" ; havana_transcript "OTTHUMT00000044102.2" ; hgnc_id "HGNC:6515" ; level 2 ; orig_coord_info "chr13,21045685,21046026,-" ; protein_id "ENSP00000372035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LATS2--PAN3^ENST00000382592.5" ; transcript_name "LATS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LATS2--PAN3 HAVANA mRNA 1001 14613 . + . FI_gene_label "LATS2^ENSG00000150457.9" ; ID "LATS2--PAN3^ENST00000382592.5" ; Parent "LATS2--PAN3^LATS2^ENSG00000150457.9" ; ccdsid "CCDS9294.1" ; exon_id "ENSE00001492905.1" ; exon_number 2 ; gene_id "LATS2--PAN3^LATS2^ENSG00000150457.9" ; gene_name LATS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016531.2" ; havana_transcript "OTTHUMT00000044102.2" ; hgnc_id "HGNC:6515" ; level 2 ; orig_coord_info "chr13,21045685,21046026,-" ; protein_id "ENSP00000372035.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LATS2--PAN3^ENST00000382592.5" ; transcript_name "LATS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAD1L1--ELFN1 HAVANA gene 1299 40030 . + . FI_gene_label "MAD1L1^ENSG00000002822.16" ; ID "MAD1L1--ELFN1^MAD1L1^ENSG00000002822.16" ; ccdsid "CCDS43539.1" ; exon_id "ENSE00002228326.1" ; exon_number 3 ; gene_id "MAD1L1--ELFN1^MAD1L1^ENSG00000002822.16" ; gene_name MAD1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151493.7" ; hgnc_id "HGNC:6762" ; level 2 ; orig_coord_info "chr7,2229984,2230133,-" ; protein_id "ENSP00000265854.7" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAD1L1--ELFN1^ENST00000265854.12" ; transcript_name "MAD1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAD1L1--ELFN1 HAVANA mRNA 1299 40030 . + . FI_gene_label "MAD1L1^ENSG00000002822.16" ; ID "MAD1L1--ELFN1^ENST00000265854.12" ; Parent "MAD1L1--ELFN1^MAD1L1^ENSG00000002822.16" ; ccdsid "CCDS43539.1" ; exon_id "ENSE00002228326.1" ; exon_number 3 ; gene_id "MAD1L1--ELFN1^MAD1L1^ENSG00000002822.16" ; gene_name MAD1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151493.7" ; hgnc_id "HGNC:6762" ; level 2 ; orig_coord_info "chr7,2229984,2230133,-" ; protein_id "ENSP00000265854.7" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAD1L1--ELFN1^ENST00000265854.12" ; transcript_name "MAD1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAD1L1--ELFN1 HAVANA gene 43033 48877 . + . FI_gene_label "ELFN1^ENSG00000225968.7" ; ID "MAD1L1--ELFN1^ELFN1^ENSG00000225968.7" ; ccdsid "CCDS59046.1" ; exon_id "ENSE00003774632.1" ; exon_number 3 ; gene_id "MAD1L1--ELFN1^ELFN1^ENSG00000225968.7" ; gene_name ELFN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151495.2" ; havana_transcript "OTTHUMT00000322893.2" ; hgnc_id "HGNC:33154" ; level 2 ; orig_coord_info "chr7,1744597,1747080,+" ; protein_id "ENSP00000456548.1" ; tag not_organism_supported basic appris_principal_1 CCDS ; transcript_id "MAD1L1--ELFN1^ENST00000424383.4" ; transcript_name "ELFN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
MAD1L1--ELFN1 HAVANA mRNA 43033 48877 . + . FI_gene_label "ELFN1^ENSG00000225968.7" ; ID "MAD1L1--ELFN1^ENST00000424383.4" ; Parent "MAD1L1--ELFN1^ELFN1^ENSG00000225968.7" ; ccdsid "CCDS59046.1" ; exon_id "ENSE00003774632.1" ; exon_number 3 ; gene_id "MAD1L1--ELFN1^ELFN1^ENSG00000225968.7" ; gene_name ELFN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151495.2" ; havana_transcript "OTTHUMT00000322893.2" ; hgnc_id "HGNC:33154" ; level 2 ; orig_coord_info "chr7,1744597,1747080,+" ; protein_id "ENSP00000456548.1" ; tag not_organism_supported basic appris_principal_1 CCDS ; transcript_id "MAD1L1--ELFN1^ENST00000424383.4" ; transcript_name "ELFN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MAD1L1--TTYH3 HAVANA gene 43033 58911 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "MAD1L1--TTYH3^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "MAD1L1--TTYH3^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAD1L1--TTYH3^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAD1L1--TTYH3 HAVANA mRNA 43033 58911 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "MAD1L1--TTYH3^ENST00000258796.12" ; Parent "MAD1L1--TTYH3^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "MAD1L1--TTYH3^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAD1L1--TTYH3^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAD1L1--TTYH3 HAVANA gene 1299 40030 . + . FI_gene_label "MAD1L1^ENSG00000002822.16" ; ID "MAD1L1--TTYH3^MAD1L1^ENSG00000002822.16" ; ccdsid "CCDS43539.1" ; exon_id "ENSE00002228326.1" ; exon_number 3 ; gene_id "MAD1L1--TTYH3^MAD1L1^ENSG00000002822.16" ; gene_name MAD1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151493.7" ; hgnc_id "HGNC:6762" ; level 2 ; orig_coord_info "chr7,2229984,2230133,-" ; protein_id "ENSP00000265854.7" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAD1L1--TTYH3^ENST00000265854.12" ; transcript_name "MAD1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAD1L1--TTYH3 HAVANA mRNA 1299 40030 . + . FI_gene_label "MAD1L1^ENSG00000002822.16" ; ID "MAD1L1--TTYH3^ENST00000265854.12" ; Parent "MAD1L1--TTYH3^MAD1L1^ENSG00000002822.16" ; ccdsid "CCDS43539.1" ; exon_id "ENSE00002228326.1" ; exon_number 3 ; gene_id "MAD1L1--TTYH3^MAD1L1^ENSG00000002822.16" ; gene_name MAD1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151493.7" ; hgnc_id "HGNC:6762" ; level 2 ; orig_coord_info "chr7,2229984,2230133,-" ; protein_id "ENSP00000265854.7" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAD1L1--TTYH3^ENST00000265854.12" ; transcript_name "MAD1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MLX--ATP6V0A1 HAVANA gene 1001 6805 . + . FI_gene_label "MLX^ENSG00000108788.12" ; ID "MLX--ATP6V0A1^MLX^ENSG00000108788.12" ; ccdsid "CCDS11430.1" ; exon_id "ENSE00002747740.1" ; exon_number 1 ; gene_id "MLX--ATP6V0A1^MLX^ENSG00000108788.12" ; gene_name MLX ; gene_type protein_coding ; havana_gene "OTTHUMG00000180246.2" ; havana_transcript "OTTHUMT00000450415.1" ; hgnc_id "HGNC:11645" ; level 2 ; orig_coord_info "chr17,42567125,42567328,+" ; protein_id "ENSP00000246912.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "MLX--ATP6V0A1^ENST00000246912.8" ; transcript_name "MLX-201" ; transcript_support_level 1 ; transcript_type protein_coding
MLX--ATP6V0A1 HAVANA mRNA 1001 6805 . + . FI_gene_label "MLX^ENSG00000108788.12" ; ID "MLX--ATP6V0A1^ENST00000246912.8" ; Parent "MLX--ATP6V0A1^MLX^ENSG00000108788.12" ; ccdsid "CCDS11430.1" ; exon_id "ENSE00002747740.1" ; exon_number 1 ; gene_id "MLX--ATP6V0A1^MLX^ENSG00000108788.12" ; gene_name MLX ; gene_type protein_coding ; havana_gene "OTTHUMG00000180246.2" ; havana_transcript "OTTHUMT00000450415.1" ; hgnc_id "HGNC:11645" ; level 2 ; orig_coord_info "chr17,42567125,42567328,+" ; protein_id "ENSP00000246912.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "MLX--ATP6V0A1^ENST00000246912.8" ; transcript_name "MLX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MLX--ATP6V0A1 HAVANA gene 9842 41695 . + . FI_gene_label "ATP6V0A1^ENSG00000033627.17" ; ID "MLX--ATP6V0A1^ATP6V0A1^ENSG00000033627.17" ; ccdsid "CCDS45683.1" ; exon_id "ENSE00003621428.1" ; exon_number 2 ; gene_id "MLX--ATP6V0A1^ATP6V0A1^ENSG00000033627.17" ; gene_name ATP6V0A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180238.2" ; havana_transcript "OTTHUMT00000450362.1" ; hgnc_id "HGNC:865" ; level 2 ; orig_coord_info "chr17,42460895,42461011,+" ; protein_id "ENSP00000264649.5" ; tag basic CCDS ; transcript_id "MLX--ATP6V0A1^ENST00000264649.10" ; transcript_name "ATP6V0A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MLX--ATP6V0A1 HAVANA mRNA 9842 41695 . + . FI_gene_label "ATP6V0A1^ENSG00000033627.17" ; ID "MLX--ATP6V0A1^ENST00000264649.10" ; Parent "MLX--ATP6V0A1^ATP6V0A1^ENSG00000033627.17" ; ccdsid "CCDS45683.1" ; exon_id "ENSE00003621428.1" ; exon_number 2 ; gene_id "MLX--ATP6V0A1^ATP6V0A1^ENSG00000033627.17" ; gene_name ATP6V0A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180238.2" ; havana_transcript "OTTHUMT00000450362.1" ; hgnc_id "HGNC:865" ; level 2 ; orig_coord_info "chr17,42460895,42461011,+" ; protein_id "ENSP00000264649.5" ; tag basic CCDS ; transcript_id "MLX--ATP6V0A1^ENST00000264649.10" ; transcript_name "ATP6V0A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MPHOSPH8--AL157944.1 HAVANA gene 1001 17616 . + . FI_gene_label "MPHOSPH8^ENSG00000196199.14" ; ID "MPHOSPH8--AL157944.1^MPHOSPH8^ENSG00000196199.14" ; ccdsid "CCDS9287.1" ; exon_id "ENSE00001856160.2" ; exon_number 1 ; gene_id "MPHOSPH8--AL157944.1^MPHOSPH8^ENSG00000196199.14" ; gene_name MPHOSPH8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016498.4" ; havana_transcript "OTTHUMT00000044028.3" ; hgnc_id "HGNC:29810" ; level 2 ; orig_coord_info "chr13,19633749,19633961,+" ; protein_id "ENSP00000355388.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MPHOSPH8--AL157944.1^ENST00000361479.10" ; transcript_name "MPHOSPH8-201" ; transcript_support_level 1 ; transcript_type protein_coding
MPHOSPH8--AL157944.1 HAVANA mRNA 1001 17616 . + . FI_gene_label "MPHOSPH8^ENSG00000196199.14" ; ID "MPHOSPH8--AL157944.1^ENST00000361479.10" ; Parent "MPHOSPH8--AL157944.1^MPHOSPH8^ENSG00000196199.14" ; ccdsid "CCDS9287.1" ; exon_id "ENSE00001856160.2" ; exon_number 1 ; gene_id "MPHOSPH8--AL157944.1^MPHOSPH8^ENSG00000196199.14" ; gene_name MPHOSPH8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016498.4" ; havana_transcript "OTTHUMT00000044028.3" ; hgnc_id "HGNC:29810" ; level 2 ; orig_coord_info "chr13,19633749,19633961,+" ; protein_id "ENSP00000355388.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MPHOSPH8--AL157944.1^ENST00000361479.10" ; transcript_name "MPHOSPH8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL23--CD81 HAVANA gene 16066 29806 . + . FI_gene_label "CD81^ENSG00000110651.12" ; ID "MRPL23--CD81^CD81^ENSG00000110651.12" ; ccdsid "CCDS7734.1" ; exon_id "ENSE00001227086.6" ; exon_number 1 ; gene_id "MRPL23--CD81^CD81^ENSG00000110651.12" ; gene_name CD81 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009892.7" ; havana_transcript "OTTHUMT00000027357.4" ; hgnc_id "HGNC:1701" ; level 2 ; orig_coord_info "chr11,2377550,2377615,+" ; protein_id "ENSP00000263645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL23--CD81^ENST00000263645.10" ; transcript_name "CD81-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL23--CD81 HAVANA mRNA 16066 29806 . + . FI_gene_label "CD81^ENSG00000110651.12" ; ID "MRPL23--CD81^ENST00000263645.10" ; Parent "MRPL23--CD81^CD81^ENSG00000110651.12" ; ccdsid "CCDS7734.1" ; exon_id "ENSE00001227086.6" ; exon_number 1 ; gene_id "MRPL23--CD81^CD81^ENSG00000110651.12" ; gene_name CD81 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009892.7" ; havana_transcript "OTTHUMT00000027357.4" ; hgnc_id "HGNC:1701" ; level 2 ; orig_coord_info "chr11,2377550,2377615,+" ; protein_id "ENSP00000263645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL23--CD81^ENST00000263645.10" ; transcript_name "CD81-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL23--CD81 HAVANA gene 1064 9612 . + . FI_gene_label "MRPL23^ENSG00000214026.11" ; ID "MRPL23--CD81^MRPL23^ENSG00000214026.11" ; exon_id "ENSE00001899659.1" ; exon_number 1 ; gene_id "MRPL23--CD81^MRPL23^ENSG00000214026.11" ; gene_name MRPL23 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012476.8" ; havana_transcript "OTTHUMT00000034766.1" ; hgnc_id "HGNC:10322" ; level 2 ; orig_coord_info "chr11,1947363,1947379,+" ; protein_id "ENSP00000370925.3" ; tag basic ; transcript_id "MRPL23--CD81^ENST00000381514.7" ; transcript_name "MRPL23-201" ; transcript_support_level 3 ; transcript_type protein_coding
MRPL23--CD81 HAVANA mRNA 1064 9612 . + . FI_gene_label "MRPL23^ENSG00000214026.11" ; ID "MRPL23--CD81^ENST00000381514.7" ; Parent "MRPL23--CD81^MRPL23^ENSG00000214026.11" ; exon_id "ENSE00001899659.1" ; exon_number 1 ; gene_id "MRPL23--CD81^MRPL23^ENSG00000214026.11" ; gene_name MRPL23 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012476.8" ; havana_transcript "OTTHUMT00000034766.1" ; hgnc_id "HGNC:10322" ; level 2 ; orig_coord_info "chr11,1947363,1947379,+" ; protein_id "ENSP00000370925.3" ; tag basic ; transcript_id "MRPL23--CD81^ENST00000381514.7" ; transcript_name "MRPL23-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
MYO10--AC092335.1 ENSEMBL gene 1013 52911 . + . FI_gene_label "MYO10^ENSG00000145555.15" ; ID "MYO10--AC092335.1^MYO10^ENSG00000145555.15" ; exon_id "ENSE00003736025.1" ; exon_number 1 ; gene_id "MYO10--AC092335.1^MYO10^ENSG00000145555.15" ; gene_name MYO10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161822.5" ; hgnc_id "HGNC:7593" ; level 3 ; orig_coord_info "chr5,16935788,16935808,-" ; protein_id "ENSP00000274203.10" ; tag basic appris_alternative_2 ; transcript_id "MYO10--AC092335.1^ENST00000274203.13" ; transcript_name "MYO10-201" ; transcript_support_level 5 ; transcript_type protein_coding
MYO10--AC092335.1 ENSEMBL mRNA 1013 52911 . + . FI_gene_label "MYO10^ENSG00000145555.15" ; ID "MYO10--AC092335.1^ENST00000274203.13" ; Parent "MYO10--AC092335.1^MYO10^ENSG00000145555.15" ; exon_id "ENSE00003736025.1" ; exon_number 1 ; gene_id "MYO10--AC092335.1^MYO10^ENSG00000145555.15" ; gene_name MYO10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161822.5" ; hgnc_id "HGNC:7593" ; level 3 ; orig_coord_info "chr5,16935788,16935808,-" ; protein_id "ENSP00000274203.10" ; tag basic appris_alternative_2 ; transcript_id "MYO10--AC092335.1^ENST00000274203.13" ; transcript_name "MYO10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MYO10--MARCHF11 ENSEMBL gene 1013 52911 . + . FI_gene_label "MYO10^ENSG00000145555.15" ; ID "MYO10--MARCHF11^MYO10^ENSG00000145555.15" ; exon_id "ENSE00003736025.1" ; exon_number 1 ; gene_id "MYO10--MARCHF11^MYO10^ENSG00000145555.15" ; gene_name MYO10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161822.5" ; hgnc_id "HGNC:7593" ; level 3 ; orig_coord_info "chr5,16935788,16935808,-" ; protein_id "ENSP00000274203.10" ; tag basic appris_alternative_2 ; transcript_id "MYO10--MARCHF11^ENST00000274203.13" ; transcript_name "MYO10-201" ; transcript_support_level 5 ; transcript_type protein_coding
MYO10--MARCHF11 ENSEMBL mRNA 1013 52911 . + . FI_gene_label "MYO10^ENSG00000145555.15" ; ID "MYO10--MARCHF11^ENST00000274203.13" ; Parent "MYO10--MARCHF11^MYO10^ENSG00000145555.15" ; exon_id "ENSE00003736025.1" ; exon_number 1 ; gene_id "MYO10--MARCHF11^MYO10^ENSG00000145555.15" ; gene_name MYO10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161822.5" ; hgnc_id "HGNC:7593" ; level 3 ; orig_coord_info "chr5,16935788,16935808,-" ; protein_id "ENSP00000274203.10" ; tag basic appris_alternative_2 ; transcript_id "MYO10--MARCHF11^ENST00000274203.13" ; transcript_name "MYO10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MYO10--MARCHF11 HAVANA gene 56890 61648 . + . FI_gene_label "MARCHF11^ENSG00000183654.9" ; ID "MYO10--MARCHF11^MARCHF11^ENSG00000183654.9" ; ccdsid "CCDS47192.1" ; exon_id "ENSE00001491690.6" ; exon_number 1 ; gene_id "MYO10--MARCHF11^MARCHF11^ENSG00000183654.9" ; gene_name MARCHF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161789.3" ; havana_transcript "OTTHUMT00000366096.3" ; hgnc_id "HGNC:33609" ; level 1 ; orig_coord_info "chr5,16179039,16179575,-" ; protein_id "ENSP00000333181.7" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "MYO10--MARCHF11^ENST00000332432.9" ; transcript_name "MARCHF11-201" ; transcript_support_level 5 ; transcript_type protein_coding
MYO10--MARCHF11 HAVANA mRNA 56890 61648 . + . FI_gene_label "MARCHF11^ENSG00000183654.9" ; ID "MYO10--MARCHF11^ENST00000332432.9" ; Parent "MYO10--MARCHF11^MARCHF11^ENSG00000183654.9" ; ccdsid "CCDS47192.1" ; exon_id "ENSE00001491690.6" ; exon_number 1 ; gene_id "MYO10--MARCHF11^MARCHF11^ENSG00000183654.9" ; gene_name MARCHF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161789.3" ; havana_transcript "OTTHUMT00000366096.3" ; hgnc_id "HGNC:33609" ; level 1 ; orig_coord_info "chr5,16179039,16179575,-" ; protein_id "ENSP00000333181.7" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "MYO10--MARCHF11^ENST00000332432.9" ; transcript_name "MARCHF11-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NDUFA10--HDAC4 HAVANA gene 1402 33485 . + . FI_gene_label "NDUFA10^ENSG00000130414.13" ; ID "NDUFA10--HDAC4^NDUFA10^ENSG00000130414.13" ; ccdsid "CCDS2531.1" ; exon_id "ENSE00001349878.3" ; exon_number 1 ; gene_id "NDUFA10--HDAC4^NDUFA10^ENSG00000130414.13" ; gene_name NDUFA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133350.5" ; havana_transcript "OTTHUMT00000257180.3" ; hgnc_id "HGNC:7684" ; level 2 ; orig_coord_info "chr2,240025227,240025301,-" ; protein_id "ENSP00000252711.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NDUFA10--HDAC4^ENST00000252711.7" ; transcript_name "NDUFA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
NDUFA10--HDAC4 HAVANA mRNA 1402 33485 . + . FI_gene_label "NDUFA10^ENSG00000130414.13" ; ID "NDUFA10--HDAC4^ENST00000252711.7" ; Parent "NDUFA10--HDAC4^NDUFA10^ENSG00000130414.13" ; ccdsid "CCDS2531.1" ; exon_id "ENSE00001349878.3" ; exon_number 1 ; gene_id "NDUFA10--HDAC4^NDUFA10^ENSG00000130414.13" ; gene_name NDUFA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133350.5" ; havana_transcript "OTTHUMT00000257180.3" ; hgnc_id "HGNC:7684" ; level 2 ; orig_coord_info "chr2,240025227,240025301,-" ; protein_id "ENSP00000252711.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NDUFA10--HDAC4^ENST00000252711.7" ; transcript_name "NDUFA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NDUFA10--HDAC4 HAVANA gene 45111 90224 . + . FI_gene_label "HDAC4^ENSG00000068024.17" ; ID "NDUFA10--HDAC4^HDAC4^ENSG00000068024.17" ; ccdsid "CCDS2529.1" ; exon_id "ENSE00003664840.1" ; exon_number 2 ; gene_id "NDUFA10--HDAC4^HDAC4^ENSG00000068024.17" ; gene_name HDAC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133344.7" ; havana_transcript "OTTHUMT00000257174.2" ; hgnc_id "HGNC:14063" ; level 2 ; orig_coord_info "chr2,239352678,239352699,-" ; protein_id "ENSP00000264606.3" ; tag basic appris_principal_2 CCDS ; transcript_id "NDUFA10--HDAC4^ENST00000345617.7" ; transcript_name "HDAC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NDUFA10--HDAC4 HAVANA mRNA 45111 90224 . + . FI_gene_label "HDAC4^ENSG00000068024.17" ; ID "NDUFA10--HDAC4^ENST00000345617.7" ; Parent "NDUFA10--HDAC4^HDAC4^ENSG00000068024.17" ; ccdsid "CCDS2529.1" ; exon_id "ENSE00003664840.1" ; exon_number 2 ; gene_id "NDUFA10--HDAC4^HDAC4^ENSG00000068024.17" ; gene_name HDAC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133344.7" ; havana_transcript "OTTHUMT00000257174.2" ; hgnc_id "HGNC:14063" ; level 2 ; orig_coord_info "chr2,239352678,239352699,-" ; protein_id "ENSP00000264606.3" ; tag basic appris_principal_2 CCDS ; transcript_id "NDUFA10--HDAC4^ENST00000345617.7" ; transcript_name "HDAC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PAN3--DCUN1D2 HAVANA gene 27541 39683 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "PAN3--DCUN1D2^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "PAN3--DCUN1D2^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "PAN3--DCUN1D2^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
PAN3--DCUN1D2 HAVANA mRNA 27541 39683 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "PAN3--DCUN1D2^ENST00000332592.7" ; Parent "PAN3--DCUN1D2^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "PAN3--DCUN1D2^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "PAN3--DCUN1D2^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PAN3--DCUN1D2 HAVANA gene 1040 24280 . + . FI_gene_label "PAN3^ENSG00000152520.14" ; ID "PAN3--DCUN1D2^PAN3^ENSG00000152520.14" ; ccdsid "CCDS9329.2" ; exon_id "ENSE00003572843.2" ; exon_number 1 ; gene_id "PAN3--DCUN1D2^PAN3^ENSG00000152520.14" ; gene_name PAN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016645.6" ; havana_transcript "OTTHUMT00000044318.5" ; hgnc_id "HGNC:29991" ; level 2 ; orig_coord_info "chr13,28138658,28139087,+" ; protein_id "ENSP00000370345.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PAN3--DCUN1D2^ENST00000380958.8" ; transcript_name "PAN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
PAN3--DCUN1D2 HAVANA mRNA 1040 24280 . + . FI_gene_label "PAN3^ENSG00000152520.14" ; ID "PAN3--DCUN1D2^ENST00000380958.8" ; Parent "PAN3--DCUN1D2^PAN3^ENSG00000152520.14" ; ccdsid "CCDS9329.2" ; exon_id "ENSE00003572843.2" ; exon_number 1 ; gene_id "PAN3--DCUN1D2^PAN3^ENSG00000152520.14" ; gene_name PAN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016645.6" ; havana_transcript "OTTHUMT00000044318.5" ; hgnc_id "HGNC:29991" ; level 2 ; orig_coord_info "chr13,28138658,28139087,+" ; protein_id "ENSP00000370345.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PAN3--DCUN1D2^ENST00000380958.8" ; transcript_name "PAN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDE3B--SPON1 HAVANA gene 1001 29105 . + . FI_gene_label "PDE3B^ENSG00000152270.9" ; ID "PDE3B--SPON1^PDE3B^ENSG00000152270.9" ; ccdsid "CCDS7817.1" ; exon_id "ENSE00001262747.6" ; exon_number 1 ; gene_id "PDE3B--SPON1^PDE3B^ENSG00000152270.9" ; gene_name PDE3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000165898.3" ; havana_transcript "OTTHUMT00000386974.3" ; hgnc_id "HGNC:8779" ; level 2 ; orig_coord_info "chr11,14644076,14645053,+" ; protein_id "ENSP00000282096.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PDE3B--SPON1^ENST00000282096.9" ; transcript_name "PDE3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDE3B--SPON1 HAVANA mRNA 1001 29105 . + . FI_gene_label "PDE3B^ENSG00000152270.9" ; ID "PDE3B--SPON1^ENST00000282096.9" ; Parent "PDE3B--SPON1^PDE3B^ENSG00000152270.9" ; ccdsid "CCDS7817.1" ; exon_id "ENSE00001262747.6" ; exon_number 1 ; gene_id "PDE3B--SPON1^PDE3B^ENSG00000152270.9" ; gene_name PDE3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000165898.3" ; havana_transcript "OTTHUMT00000386974.3" ; hgnc_id "HGNC:8779" ; level 2 ; orig_coord_info "chr11,14644076,14645053,+" ; protein_id "ENSP00000282096.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PDE3B--SPON1^ENST00000282096.9" ; transcript_name "PDE3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDE3B--SPON1 HAVANA gene 32106 51137 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "PDE3B--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "PDE3B--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDE3B--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDE3B--SPON1 HAVANA mRNA 32106 51137 . + . FI_gene_label "SPON1^ENSG00000262655.4" ; ID "PDE3B--SPON1^ENST00000576479.4" ; Parent "PDE3B--SPON1^SPON1^ENSG00000262655.4" ; ccdsid "CCDS73262.1" ; exon_id "ENSE00002638217.3" ; exon_number 1 ; gene_id "PDE3B--SPON1^SPON1^ENSG00000262655.4" ; gene_name SPON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181576.4" ; havana_transcript "OTTHUMT00000456656.4" ; hgnc_id "HGNC:11252" ; level 2 ; orig_coord_info "chr11,13962905,13963142,+" ; protein_id "ENSP00000460236.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDE3B--SPON1^ENST00000576479.4" ; transcript_name "SPON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA4--TULP2 HAVANA gene 20726 31549 . + . FI_gene_label "TULP2^ENSG00000104804.8" ; ID "PLEKHA4--TULP2^TULP2^ENSG00000104804.8" ; ccdsid "CCDS12739.1" ; exon_id "ENSE00000853371.3" ; exon_number 2 ; gene_id "PLEKHA4--TULP2^TULP2^ENSG00000104804.8" ; gene_name TULP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164406.3" ; havana_transcript "OTTHUMT00000378633.2" ; hgnc_id "HGNC:12424" ; level 2 ; orig_coord_info "chr19,48897837,48897868,-" ; protein_id "ENSP00000221399.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHA4--TULP2^ENST00000221399.8" ; transcript_name "TULP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHA4--TULP2 HAVANA mRNA 20726 31549 . + . FI_gene_label "TULP2^ENSG00000104804.8" ; ID "PLEKHA4--TULP2^ENST00000221399.8" ; Parent "PLEKHA4--TULP2^TULP2^ENSG00000104804.8" ; ccdsid "CCDS12739.1" ; exon_id "ENSE00000853371.3" ; exon_number 2 ; gene_id "PLEKHA4--TULP2^TULP2^ENSG00000104804.8" ; gene_name TULP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164406.3" ; havana_transcript "OTTHUMT00000378633.2" ; hgnc_id "HGNC:12424" ; level 2 ; orig_coord_info "chr19,48897837,48897868,-" ; protein_id "ENSP00000221399.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHA4--TULP2^ENST00000221399.8" ; transcript_name "TULP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA4--TULP2 HAVANA gene 1001 17725 . + . FI_gene_label "PLEKHA4^ENSG00000105559.12" ; ID "PLEKHA4--TULP2^PLEKHA4^ENSG00000105559.12" ; ccdsid "CCDS12737.1" ; exon_id "ENSE00000718344.1" ; exon_number 2 ; gene_id "PLEKHA4--TULP2^PLEKHA4^ENSG00000105559.12" ; gene_name PLEKHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183329.4" ; havana_transcript "OTTHUMT00000466216.2" ; hgnc_id "HGNC:14339" ; level 2 ; orig_coord_info "chr19,48867537,48867620,-" ; protein_id "ENSP00000263265.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PLEKHA4--TULP2^ENST00000263265.11" ; transcript_name "PLEKHA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHA4--TULP2 HAVANA mRNA 1001 17725 . + . FI_gene_label "PLEKHA4^ENSG00000105559.12" ; ID "PLEKHA4--TULP2^ENST00000263265.11" ; Parent "PLEKHA4--TULP2^PLEKHA4^ENSG00000105559.12" ; ccdsid "CCDS12737.1" ; exon_id "ENSE00000718344.1" ; exon_number 2 ; gene_id "PLEKHA4--TULP2^PLEKHA4^ENSG00000105559.12" ; gene_name PLEKHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183329.4" ; havana_transcript "OTTHUMT00000466216.2" ; hgnc_id "HGNC:14339" ; level 2 ; orig_coord_info "chr19,48867537,48867620,-" ; protein_id "ENSP00000263265.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PLEKHA4--TULP2^ENST00000263265.11" ; transcript_name "PLEKHA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PWWP2B--INPP5A HAVANA gene 1033 5647 . + . FI_gene_label "PWWP2B^ENSG00000171813.14" ; ID "PWWP2B--INPP5A^PWWP2B^ENSG00000171813.14" ; ccdsid "CCDS7667.2" ; exon_id "ENSE00003845279.1" ; exon_number 1 ; gene_id "PWWP2B--INPP5A^PWWP2B^ENSG00000171813.14" ; gene_name PWWP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000019286.5" ; havana_transcript "OTTHUMT00000051075.4" ; hgnc_id "HGNC:25150" ; level 2 ; orig_coord_info "chr10,132397227,132397351,+" ; protein_id "ENSP00000306324.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PWWP2B--INPP5A^ENST00000305233.6" ; transcript_name "PWWP2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PWWP2B--INPP5A HAVANA mRNA 1033 5647 . + . FI_gene_label "PWWP2B^ENSG00000171813.14" ; ID "PWWP2B--INPP5A^ENST00000305233.6" ; Parent "PWWP2B--INPP5A^PWWP2B^ENSG00000171813.14" ; ccdsid "CCDS7667.2" ; exon_id "ENSE00003845279.1" ; exon_number 1 ; gene_id "PWWP2B--INPP5A^PWWP2B^ENSG00000171813.14" ; gene_name PWWP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000019286.5" ; havana_transcript "OTTHUMT00000051075.4" ; hgnc_id "HGNC:25150" ; level 2 ; orig_coord_info "chr10,132397227,132397351,+" ; protein_id "ENSP00000306324.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PWWP2B--INPP5A^ENST00000305233.6" ; transcript_name "PWWP2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PWWP2B--INPP5A HAVANA gene 10044 22848 . + . FI_gene_label "INPP5A^ENSG00000068383.19" ; ID "PWWP2B--INPP5A^INPP5A^ENSG00000068383.19" ; exon_id "ENSE00001635546.1" ; exon_number 1 ; gene_id "PWWP2B--INPP5A^INPP5A^ENSG00000068383.19" ; gene_name INPP5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000019293.6" ; havana_transcript "OTTHUMT00000051087.2" ; hgnc_id "HGNC:6076" ; level 2 ; orig_coord_info "chr10,132607926,132607956,+" ; protein_id "ENSP00000340707.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "PWWP2B--INPP5A^ENST00000342652.6" ; transcript_name "INPP5A-201" ; transcript_support_level 5 ; transcript_type protein_coding
PWWP2B--INPP5A HAVANA mRNA 10044 22848 . + . FI_gene_label "INPP5A^ENSG00000068383.19" ; ID "PWWP2B--INPP5A^ENST00000342652.6" ; Parent "PWWP2B--INPP5A^INPP5A^ENSG00000068383.19" ; exon_id "ENSE00001635546.1" ; exon_number 1 ; gene_id "PWWP2B--INPP5A^INPP5A^ENSG00000068383.19" ; gene_name INPP5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000019293.6" ; havana_transcript "OTTHUMT00000051087.2" ; hgnc_id "HGNC:6076" ; level 2 ; orig_coord_info "chr10,132607926,132607956,+" ; protein_id "ENSP00000340707.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "PWWP2B--INPP5A^ENST00000342652.6" ; transcript_name "INPP5A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RALGDS--BRD3 HAVANA gene 23132 41316 . + . FI_gene_label "BRD3^ENSG00000169925.17" ; ID "RALGDS--BRD3^BRD3^ENSG00000169925.17" ; ccdsid "CCDS6980.1" ; exon_id "ENSE00002693824.1" ; exon_number 2 ; gene_id "RALGDS--BRD3^BRD3^ENSG00000169925.17" ; gene_name BRD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021004.8" ; havana_transcript "OTTHUMT00000055390.5" ; hgnc_id "HGNC:1104" ; level 2 ; orig_coord_info "chr9,134053265,134053477,-" ; protein_id "ENSP00000305918.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RALGDS--BRD3^ENST00000303407.12" ; transcript_name "BRD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
RALGDS--BRD3 HAVANA mRNA 23132 41316 . + . FI_gene_label "BRD3^ENSG00000169925.17" ; ID "RALGDS--BRD3^ENST00000303407.12" ; Parent "RALGDS--BRD3^BRD3^ENSG00000169925.17" ; ccdsid "CCDS6980.1" ; exon_id "ENSE00002693824.1" ; exon_number 2 ; gene_id "RALGDS--BRD3^BRD3^ENSG00000169925.17" ; gene_name BRD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021004.8" ; havana_transcript "OTTHUMT00000055390.5" ; hgnc_id "HGNC:1104" ; level 2 ; orig_coord_info "chr9,134053265,134053477,-" ; protein_id "ENSP00000305918.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RALGDS--BRD3^ENST00000303407.12" ; transcript_name "BRD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RALGDS--BRD3 HAVANA gene 4866 19622 . + . FI_gene_label "RALGDS^ENSG00000160271.16" ; ID "RALGDS--BRD3^RALGDS^ENSG00000160271.16" ; ccdsid "CCDS65172.1" ; exon_id "ENSE00001514306.2" ; exon_number 1 ; gene_id "RALGDS--BRD3^RALGDS^ENSG00000160271.16" ; gene_name RALGDS ; gene_type protein_coding ; havana_gene "OTTHUMG00000020858.5" ; havana_transcript "OTTHUMT00000054838.2" ; hgnc_id "HGNC:9842" ; level 2 ; orig_coord_info "chr9,133120972,133121154,-" ; protein_id "ENSP00000361117.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "RALGDS--BRD3^ENST00000372047.7" ; transcript_name "RALGDS-201" ; transcript_support_level 1 ; transcript_type protein_coding
RALGDS--BRD3 HAVANA mRNA 4866 19622 . + . FI_gene_label "RALGDS^ENSG00000160271.16" ; ID "RALGDS--BRD3^ENST00000372047.7" ; Parent "RALGDS--BRD3^RALGDS^ENSG00000160271.16" ; ccdsid "CCDS65172.1" ; exon_id "ENSE00001514306.2" ; exon_number 1 ; gene_id "RALGDS--BRD3^RALGDS^ENSG00000160271.16" ; gene_name RALGDS ; gene_type protein_coding ; havana_gene "OTTHUMG00000020858.5" ; havana_transcript "OTTHUMT00000054838.2" ; hgnc_id "HGNC:9842" ; level 2 ; orig_coord_info "chr9,133120972,133121154,-" ; protein_id "ENSP00000361117.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "RALGDS--BRD3^ENST00000372047.7" ; transcript_name "RALGDS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RANBP10--PLA2G15 HAVANA gene 23195 32017 . + . FI_gene_label "PLA2G15^ENSG00000103066.13" ; ID "RANBP10--PLA2G15^PLA2G15^ENSG00000103066.13" ; ccdsid "CCDS10864.1" ; exon_id "ENSE00002310182.1" ; exon_number 1 ; gene_id "RANBP10--PLA2G15^PLA2G15^ENSG00000103066.13" ; gene_name PLA2G15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137554.9" ; havana_transcript "OTTHUMT00000268888.4" ; hgnc_id "HGNC:17163" ; level 2 ; orig_coord_info "chr16,68245427,68245553,+" ; protein_id "ENSP00000219345.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP10--PLA2G15^ENST00000219345.10" ; transcript_name "PLA2G15-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP10--PLA2G15 HAVANA mRNA 23195 32017 . + . FI_gene_label "PLA2G15^ENSG00000103066.13" ; ID "RANBP10--PLA2G15^ENST00000219345.10" ; Parent "RANBP10--PLA2G15^PLA2G15^ENSG00000103066.13" ; ccdsid "CCDS10864.1" ; exon_id "ENSE00002310182.1" ; exon_number 1 ; gene_id "RANBP10--PLA2G15^PLA2G15^ENSG00000103066.13" ; gene_name PLA2G15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137554.9" ; havana_transcript "OTTHUMT00000268888.4" ; hgnc_id "HGNC:17163" ; level 2 ; orig_coord_info "chr16,68245427,68245553,+" ; protein_id "ENSP00000219345.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RANBP10--PLA2G15^ENST00000219345.10" ; transcript_name "PLA2G15-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RANBP10--PLA2G15 HAVANA gene 1093 20125 . + . FI_gene_label "RANBP10^ENSG00000141084.11" ; ID "RANBP10--PLA2G15^RANBP10^ENSG00000141084.11" ; ccdsid "CCDS32469.1" ; exon_id "ENSE00003616976.1" ; exon_number 1 ; gene_id "RANBP10--PLA2G15^RANBP10^ENSG00000141084.11" ; gene_name RANBP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184044.5" ; havana_transcript "OTTHUMT00000467896.4" ; hgnc_id "HGNC:29285" ; level 2 ; orig_coord_info "chr16,67806302,67806536,-" ; protein_id "ENSP00000316589.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RANBP10--PLA2G15^ENST00000317506.8" ; transcript_name "RANBP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
RANBP10--PLA2G15 HAVANA mRNA 1093 20125 . + . FI_gene_label "RANBP10^ENSG00000141084.11" ; ID "RANBP10--PLA2G15^ENST00000317506.8" ; Parent "RANBP10--PLA2G15^RANBP10^ENSG00000141084.11" ; ccdsid "CCDS32469.1" ; exon_id "ENSE00003616976.1" ; exon_number 1 ; gene_id "RANBP10--PLA2G15^RANBP10^ENSG00000141084.11" ; gene_name RANBP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184044.5" ; havana_transcript "OTTHUMT00000467896.4" ; hgnc_id "HGNC:29285" ; level 2 ; orig_coord_info "chr16,67806302,67806536,-" ; protein_id "ENSP00000316589.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RANBP10--PLA2G15^ENST00000317506.8" ; transcript_name "RANBP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--FAR1P1 HAVANA gene 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--FAR1P1^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--FAR1P1^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--FAR1P1^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
RSBN1--FAR1P1 HAVANA mRNA 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--FAR1P1^ENST00000261441.9" ; Parent "RSBN1--FAR1P1^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--FAR1P1^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--FAR1P1^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--KL HAVANA gene 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--KL^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--KL^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--KL^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
RSBN1--KL HAVANA mRNA 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--KL^ENST00000261441.9" ; Parent "RSBN1--KL^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--KL^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--KL^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--KL HAVANA gene 16717 25549 . + . FI_gene_label "KL^ENSG00000133116.8" ; ID "RSBN1--KL^KL^ENSG00000133116.8" ; ccdsid "CCDS9347.1" ; exon_id "ENSE00003513781.2" ; exon_number 1 ; gene_id "RSBN1--KL^KL^ENSG00000133116.8" ; gene_name KL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017408.2" ; havana_transcript "OTTHUMT00000045987.2" ; hgnc_id "HGNC:6344" ; level 2 ; orig_coord_info "chr13,33016441,33017259,+" ; protein_id "ENSP00000369442.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RSBN1--KL^ENST00000380099.4" ; transcript_name "KL-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSBN1--KL HAVANA mRNA 16717 25549 . + . FI_gene_label "KL^ENSG00000133116.8" ; ID "RSBN1--KL^ENST00000380099.4" ; Parent "RSBN1--KL^KL^ENSG00000133116.8" ; ccdsid "CCDS9347.1" ; exon_id "ENSE00003513781.2" ; exon_number 1 ; gene_id "RSBN1--KL^KL^ENSG00000133116.8" ; gene_name KL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017408.2" ; havana_transcript "OTTHUMT00000045987.2" ; hgnc_id "HGNC:6344" ; level 2 ; orig_coord_info "chr13,33016441,33017259,+" ; protein_id "ENSP00000369442.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RSBN1--KL^ENST00000380099.4" ; transcript_name "KL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--KRT18P27 HAVANA gene 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--KRT18P27^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--KRT18P27^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--KRT18P27^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
RSBN1--KRT18P27 HAVANA mRNA 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--KRT18P27^ENST00000261441.9" ; Parent "RSBN1--KRT18P27^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--KRT18P27^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--KRT18P27^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--STARD13 HAVANA gene 23399 44362 . + . FI_gene_label "STARD13^ENSG00000133121.21" ; ID "RSBN1--STARD13^STARD13^ENSG00000133121.21" ; ccdsid "CCDS9349.1" ; exon_id "ENSE00001333091.2" ; exon_number 1 ; gene_id "RSBN1--STARD13^STARD13^ENSG00000133121.21" ; gene_name STARD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016708.8" ; havana_transcript "OTTHUMT00000044439.3" ; hgnc_id "HGNC:19164" ; level 2 ; orig_coord_info "chr13,33185878,33186022,-" ; protein_id "ENSP00000255486.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "RSBN1--STARD13^ENST00000255486.8" ; transcript_name "STARD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSBN1--STARD13 HAVANA mRNA 23399 44362 . + . FI_gene_label "STARD13^ENSG00000133121.21" ; ID "RSBN1--STARD13^ENST00000255486.8" ; Parent "RSBN1--STARD13^STARD13^ENSG00000133121.21" ; ccdsid "CCDS9349.1" ; exon_id "ENSE00001333091.2" ; exon_number 1 ; gene_id "RSBN1--STARD13^STARD13^ENSG00000133121.21" ; gene_name STARD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016708.8" ; havana_transcript "OTTHUMT00000044439.3" ; hgnc_id "HGNC:19164" ; level 2 ; orig_coord_info "chr13,33185878,33186022,-" ; protein_id "ENSP00000255486.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "RSBN1--STARD13^ENST00000255486.8" ; transcript_name "STARD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSBN1--STARD13 HAVANA gene 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--STARD13^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--STARD13^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--STARD13^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
RSBN1--STARD13 HAVANA mRNA 1001 13716 . + . FI_gene_label "RSBN1^ENSG00000081019.13" ; ID "RSBN1--STARD13^ENST00000261441.9" ; Parent "RSBN1--STARD13^RSBN1^ENSG00000081019.13" ; ccdsid "CCDS862.1" ; exon_id "ENSE00001142071.5" ; exon_number 1 ; gene_id "RSBN1--STARD13^RSBN1^ENSG00000081019.13" ; gene_name RSBN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011938.3" ; havana_transcript "OTTHUMT00000033022.2" ; hgnc_id "HGNC:25642" ; level 2 ; orig_coord_info "chr1,113811710,113812412,-" ; protein_id "ENSP00000261441.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "RSBN1--STARD13^ENST00000261441.9" ; transcript_name "RSBN1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC19A1--COL18A1 HAVANA gene 5687 18389 . + . FI_gene_label "SLC19A1^ENSG00000173638.19" ; ID "SLC19A1--COL18A1^SLC19A1^ENSG00000173638.19" ; ccdsid "CCDS13725.1" ; exon_id "ENSE00002734562.1" ; exon_number 2 ; gene_id "SLC19A1--COL18A1^SLC19A1^ENSG00000173638.19" ; gene_name SLC19A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090397.9" ; havana_transcript "OTTHUMT00000206796.2" ; hgnc_id "HGNC:10937" ; level 2 ; orig_coord_info "chr21,45537771,45537959,-" ; protein_id "ENSP00000308895.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SLC19A1--COL18A1^ENST00000311124.9" ; transcript_name "SLC19A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC19A1--COL18A1 HAVANA mRNA 5687 18389 . + . FI_gene_label "SLC19A1^ENSG00000173638.19" ; ID "SLC19A1--COL18A1^ENST00000311124.9" ; Parent "SLC19A1--COL18A1^SLC19A1^ENSG00000173638.19" ; ccdsid "CCDS13725.1" ; exon_id "ENSE00002734562.1" ; exon_number 2 ; gene_id "SLC19A1--COL18A1^SLC19A1^ENSG00000173638.19" ; gene_name SLC19A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090397.9" ; havana_transcript "OTTHUMT00000206796.2" ; hgnc_id "HGNC:10937" ; level 2 ; orig_coord_info "chr21,45537771,45537959,-" ; protein_id "ENSP00000308895.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SLC19A1--COL18A1^ENST00000311124.9" ; transcript_name "SLC19A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC19A1--COL18A1 HAVANA gene 46790 63988 . + . FI_gene_label "COL18A1^ENSG00000182871.16" ; ID "SLC19A1--COL18A1^COL18A1^ENSG00000182871.16" ; exon_id "ENSE00001759875.1" ; exon_number 1 ; gene_id "SLC19A1--COL18A1^COL18A1^ENSG00000182871.16" ; gene_name COL18A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090407.6" ; havana_transcript "OTTHUMT00000206829.1" ; hgnc_id "HGNC:2195" ; level 2 ; orig_coord_info "chr21,45490275,45490346,+" ; protein_id "ENSP00000339118.5" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SLC19A1--COL18A1^ENST00000342220.9" ; transcript_name "COL18A1-201" ; transcript_support_level 2 ; transcript_type protein_coding
SLC19A1--COL18A1 HAVANA mRNA 46790 63988 . + . FI_gene_label "COL18A1^ENSG00000182871.16" ; ID "SLC19A1--COL18A1^ENST00000342220.9" ; Parent "SLC19A1--COL18A1^COL18A1^ENSG00000182871.16" ; exon_id "ENSE00001759875.1" ; exon_number 1 ; gene_id "SLC19A1--COL18A1^COL18A1^ENSG00000182871.16" ; gene_name COL18A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090407.6" ; havana_transcript "OTTHUMT00000206829.1" ; hgnc_id "HGNC:2195" ; level 2 ; orig_coord_info "chr21,45490275,45490346,+" ; protein_id "ENSP00000339118.5" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SLC19A1--COL18A1^ENST00000342220.9" ; transcript_name "COL18A1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC19A1--FAM207A HAVANA gene 29439 37805 . + . FI_gene_label "FAM207A^ENSG00000160256.13" ; ID "SLC19A1--FAM207A^FAM207A^ENSG00000160256.13" ; ccdsid "CCDS13718.1" ; exon_id "ENSE00001878719.2" ; exon_number 1 ; gene_id "SLC19A1--FAM207A^FAM207A^ENSG00000160256.13" ; gene_name FAM207A ; gene_type protein_coding ; havana_gene "OTTHUMG00000090293.3" ; havana_transcript "OTTHUMT00000206639.2" ; hgnc_id "HGNC:15811" ; level 2 ; orig_coord_info "chr21,44940058,44940186,+" ; protein_id "ENSP00000291634.6" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "SLC19A1--FAM207A^ENST00000291634.11" ; transcript_name "FAM207A-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC19A1--FAM207A HAVANA mRNA 29439 37805 . + . FI_gene_label "FAM207A^ENSG00000160256.13" ; ID "SLC19A1--FAM207A^ENST00000291634.11" ; Parent "SLC19A1--FAM207A^FAM207A^ENSG00000160256.13" ; ccdsid "CCDS13718.1" ; exon_id "ENSE00001878719.2" ; exon_number 1 ; gene_id "SLC19A1--FAM207A^FAM207A^ENSG00000160256.13" ; gene_name FAM207A ; gene_type protein_coding ; havana_gene "OTTHUMG00000090293.3" ; havana_transcript "OTTHUMT00000206639.2" ; hgnc_id "HGNC:15811" ; level 2 ; orig_coord_info "chr21,44940058,44940186,+" ; protein_id "ENSP00000291634.6" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "SLC19A1--FAM207A^ENST00000291634.11" ; transcript_name "FAM207A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC19A1--FAM207A HAVANA gene 5687 18389 . + . FI_gene_label "SLC19A1^ENSG00000173638.19" ; ID "SLC19A1--FAM207A^SLC19A1^ENSG00000173638.19" ; ccdsid "CCDS13725.1" ; exon_id "ENSE00002734562.1" ; exon_number 2 ; gene_id "SLC19A1--FAM207A^SLC19A1^ENSG00000173638.19" ; gene_name SLC19A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090397.9" ; havana_transcript "OTTHUMT00000206796.2" ; hgnc_id "HGNC:10937" ; level 2 ; orig_coord_info "chr21,45537771,45537959,-" ; protein_id "ENSP00000308895.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SLC19A1--FAM207A^ENST00000311124.9" ; transcript_name "SLC19A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC19A1--FAM207A HAVANA mRNA 5687 18389 . + . FI_gene_label "SLC19A1^ENSG00000173638.19" ; ID "SLC19A1--FAM207A^ENST00000311124.9" ; Parent "SLC19A1--FAM207A^SLC19A1^ENSG00000173638.19" ; ccdsid "CCDS13725.1" ; exon_id "ENSE00002734562.1" ; exon_number 2 ; gene_id "SLC19A1--FAM207A^SLC19A1^ENSG00000173638.19" ; gene_name SLC19A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090397.9" ; havana_transcript "OTTHUMT00000206796.2" ; hgnc_id "HGNC:10937" ; level 2 ; orig_coord_info "chr21,45537771,45537959,-" ; protein_id "ENSP00000308895.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SLC19A1--FAM207A^ENST00000311124.9" ; transcript_name "SLC19A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC27A1--BTBD2 HAVANA gene 2278 16745 . + . FI_gene_label "SLC27A1^ENSG00000130304.17" ; ID "SLC27A1--BTBD2^SLC27A1^ENSG00000130304.17" ; ccdsid "CCDS32953.1" ; exon_id "ENSE00003003279.2" ; exon_number 1 ; gene_id "SLC27A1--BTBD2^SLC27A1^ENSG00000130304.17" ; gene_name SLC27A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182878.2" ; havana_transcript "OTTHUMT00000464145.2" ; hgnc_id "HGNC:10995" ; level 2 ; orig_coord_info "chr19,17470541,17470707,+" ; protein_id "ENSP00000252595.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC27A1--BTBD2^ENST00000252595.12" ; transcript_name "SLC27A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC27A1--BTBD2 HAVANA mRNA 2278 16745 . + . FI_gene_label "SLC27A1^ENSG00000130304.17" ; ID "SLC27A1--BTBD2^ENST00000252595.12" ; Parent "SLC27A1--BTBD2^SLC27A1^ENSG00000130304.17" ; ccdsid "CCDS32953.1" ; exon_id "ENSE00003003279.2" ; exon_number 1 ; gene_id "SLC27A1--BTBD2^SLC27A1^ENSG00000130304.17" ; gene_name SLC27A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182878.2" ; havana_transcript "OTTHUMT00000464145.2" ; hgnc_id "HGNC:10995" ; level 2 ; orig_coord_info "chr19,17470541,17470707,+" ; protein_id "ENSP00000252595.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC27A1--BTBD2^ENST00000252595.12" ; transcript_name "SLC27A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC27A1--BTBD2 HAVANA gene 23260 34860 . + . FI_gene_label "BTBD2^ENSG00000133243.10" ; ID "SLC27A1--BTBD2^BTBD2^ENSG00000133243.10" ; ccdsid "CCDS12078.1" ; exon_id "ENSE00001055897.4" ; exon_number 1 ; gene_id "SLC27A1--BTBD2^BTBD2^ENSG00000133243.10" ; gene_name BTBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180017.7" ; havana_transcript "OTTHUMT00000449300.5" ; hgnc_id "HGNC:15504" ; level 2 ; orig_coord_info "chr19,2015297,2015703,-" ; protein_id "ENSP00000255608.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC27A1--BTBD2^ENST00000255608.9" ; transcript_name "BTBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC27A1--BTBD2 HAVANA mRNA 23260 34860 . + . FI_gene_label "BTBD2^ENSG00000133243.10" ; ID "SLC27A1--BTBD2^ENST00000255608.9" ; Parent "SLC27A1--BTBD2^BTBD2^ENSG00000133243.10" ; ccdsid "CCDS12078.1" ; exon_id "ENSE00001055897.4" ; exon_number 1 ; gene_id "SLC27A1--BTBD2^BTBD2^ENSG00000133243.10" ; gene_name BTBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180017.7" ; havana_transcript "OTTHUMT00000449300.5" ; hgnc_id "HGNC:15504" ; level 2 ; orig_coord_info "chr19,2015297,2015703,-" ; protein_id "ENSP00000255608.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC27A1--BTBD2^ENST00000255608.9" ; transcript_name "BTBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STK32C--PWWP2B HAVANA gene 4905 17052 . + . FI_gene_label "STK32C^ENSG00000165752.17" ; ID "STK32C--PWWP2B^STK32C^ENSG00000165752.17" ; ccdsid "CCDS7666.1" ; exon_id "ENSE00001268023.5" ; exon_number 1 ; gene_id "STK32C--PWWP2B^STK32C^ENSG00000165752.17" ; gene_name STK32C ; gene_type protein_coding ; havana_gene "OTTHUMG00000019285.10" ; havana_transcript "OTTHUMT00000051069.5" ; hgnc_id "HGNC:21332" ; level 2 ; orig_coord_info "chr10,132307572,132307833,-" ; protein_id "ENSP00000298630.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK32C--PWWP2B^ENST00000298630.8" ; transcript_name "STK32C-201" ; transcript_support_level 1 ; transcript_type protein_coding
STK32C--PWWP2B HAVANA mRNA 4905 17052 . + . FI_gene_label "STK32C^ENSG00000165752.17" ; ID "STK32C--PWWP2B^ENST00000298630.8" ; Parent "STK32C--PWWP2B^STK32C^ENSG00000165752.17" ; ccdsid "CCDS7666.1" ; exon_id "ENSE00001268023.5" ; exon_number 1 ; gene_id "STK32C--PWWP2B^STK32C^ENSG00000165752.17" ; gene_name STK32C ; gene_type protein_coding ; havana_gene "OTTHUMG00000019285.10" ; havana_transcript "OTTHUMT00000051069.5" ; hgnc_id "HGNC:21332" ; level 2 ; orig_coord_info "chr10,132307572,132307833,-" ; protein_id "ENSP00000298630.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK32C--PWWP2B^ENST00000298630.8" ; transcript_name "STK32C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STK32C--PWWP2B HAVANA gene 20085 24699 . + . FI_gene_label "PWWP2B^ENSG00000171813.14" ; ID "STK32C--PWWP2B^PWWP2B^ENSG00000171813.14" ; ccdsid "CCDS7667.2" ; exon_id "ENSE00003845279.1" ; exon_number 1 ; gene_id "STK32C--PWWP2B^PWWP2B^ENSG00000171813.14" ; gene_name PWWP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000019286.5" ; havana_transcript "OTTHUMT00000051075.4" ; hgnc_id "HGNC:25150" ; level 2 ; orig_coord_info "chr10,132397227,132397351,+" ; protein_id "ENSP00000306324.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK32C--PWWP2B^ENST00000305233.6" ; transcript_name "PWWP2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
STK32C--PWWP2B HAVANA mRNA 20085 24699 . + . FI_gene_label "PWWP2B^ENSG00000171813.14" ; ID "STK32C--PWWP2B^ENST00000305233.6" ; Parent "STK32C--PWWP2B^PWWP2B^ENSG00000171813.14" ; ccdsid "CCDS7667.2" ; exon_id "ENSE00003845279.1" ; exon_number 1 ; gene_id "STK32C--PWWP2B^PWWP2B^ENSG00000171813.14" ; gene_name PWWP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000019286.5" ; havana_transcript "OTTHUMT00000051075.4" ; hgnc_id "HGNC:25150" ; level 2 ; orig_coord_info "chr10,132397227,132397351,+" ; protein_id "ENSP00000306324.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK32C--PWWP2B^ENST00000305233.6" ; transcript_name "PWWP2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAFA5--TBC1D22A HAVANA gene 1040 10080 . + . FI_gene_label "TAFA5^ENSG00000219438.9" ; ID "TAFA5--TBC1D22A^TAFA5^ENSG00000219438.9" ; exon_id "ENSE00001131477.4" ; exon_number 1 ; gene_id "TAFA5--TBC1D22A^TAFA5^ENSG00000219438.9" ; gene_name TAFA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150308.2" ; havana_transcript "OTTHUMT00000317503.2" ; hgnc_id "HGNC:21592" ; level 2 ; orig_coord_info "chr22,48489593,48489704,+" ; protein_id "ENSP00000336812.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TAFA5--TBC1D22A^ENST00000336769.9" ; transcript_name "TAFA5-201" ; transcript_support_level 4 ; transcript_type protein_coding
TAFA5--TBC1D22A HAVANA mRNA 1040 10080 . + . FI_gene_label "TAFA5^ENSG00000219438.9" ; ID "TAFA5--TBC1D22A^ENST00000336769.9" ; Parent "TAFA5--TBC1D22A^TAFA5^ENSG00000219438.9" ; exon_id "ENSE00001131477.4" ; exon_number 1 ; gene_id "TAFA5--TBC1D22A^TAFA5^ENSG00000219438.9" ; gene_name TAFA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150308.2" ; havana_transcript "OTTHUMT00000317503.2" ; hgnc_id "HGNC:21592" ; level 2 ; orig_coord_info "chr22,48489593,48489704,+" ; protein_id "ENSP00000336812.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TAFA5--TBC1D22A^ENST00000336769.9" ; transcript_name "TAFA5-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
TAFA5--TBC1D22A HAVANA gene 13114 35277 . + . FI_gene_label "TBC1D22A^ENSG00000054611.14" ; ID "TAFA5--TBC1D22A^TBC1D22A^ENSG00000054611.14" ; ccdsid "CCDS14078.1" ; exon_id "ENSE00001916547.2" ; exon_number 1 ; gene_id "TAFA5--TBC1D22A^TBC1D22A^ENSG00000054611.14" ; gene_name TBC1D22A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150332.4" ; havana_transcript "OTTHUMT00000317600.4" ; hgnc_id "HGNC:1309" ; level 2 ; orig_coord_info "chr22,46762787,46762848,+" ; protein_id "ENSP00000336724.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAFA5--TBC1D22A^ENST00000337137.9" ; transcript_name "TBC1D22A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAFA5--TBC1D22A HAVANA mRNA 13114 35277 . + . FI_gene_label "TBC1D22A^ENSG00000054611.14" ; ID "TAFA5--TBC1D22A^ENST00000337137.9" ; Parent "TAFA5--TBC1D22A^TBC1D22A^ENSG00000054611.14" ; ccdsid "CCDS14078.1" ; exon_id "ENSE00001916547.2" ; exon_number 1 ; gene_id "TAFA5--TBC1D22A^TBC1D22A^ENSG00000054611.14" ; gene_name TBC1D22A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150332.4" ; havana_transcript "OTTHUMT00000317600.4" ; hgnc_id "HGNC:1309" ; level 2 ; orig_coord_info "chr22,46762787,46762848,+" ; protein_id "ENSP00000336724.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TAFA5--TBC1D22A^ENST00000337137.9" ; transcript_name "TBC1D22A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D16--BAIAP2 HAVANA gene 1001 24188 . + . FI_gene_label "TBC1D16^ENSG00000167291.16" ; ID "TBC1D16--BAIAP2^TBC1D16^ENSG00000167291.16" ; ccdsid "CCDS11766.1" ; exon_id "ENSE00001382516.1" ; exon_number 2 ; gene_id "TBC1D16--BAIAP2^TBC1D16^ENSG00000167291.16" ; gene_name TBC1D16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177489.5" ; havana_transcript "OTTHUMT00000437145.2" ; hgnc_id "HGNC:28356" ; level 2 ; orig_coord_info "chr17,80013367,80013547,-" ; protein_id "ENSP00000309794.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D16--BAIAP2^ENST00000310924.7" ; transcript_name "TBC1D16-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D16--BAIAP2 HAVANA mRNA 1001 24188 . + . FI_gene_label "TBC1D16^ENSG00000167291.16" ; ID "TBC1D16--BAIAP2^ENST00000310924.7" ; Parent "TBC1D16--BAIAP2^TBC1D16^ENSG00000167291.16" ; ccdsid "CCDS11766.1" ; exon_id "ENSE00001382516.1" ; exon_number 2 ; gene_id "TBC1D16--BAIAP2^TBC1D16^ENSG00000167291.16" ; gene_name TBC1D16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177489.5" ; havana_transcript "OTTHUMT00000437145.2" ; hgnc_id "HGNC:28356" ; level 2 ; orig_coord_info "chr17,80013367,80013547,-" ; protein_id "ENSP00000309794.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D16--BAIAP2^ENST00000310924.7" ; transcript_name "TBC1D16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D16--BAIAP2 HAVANA gene 27189 50785 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "TBC1D16--BAIAP2^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "TBC1D16--BAIAP2^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "TBC1D16--BAIAP2^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D16--BAIAP2 HAVANA mRNA 27189 50785 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "TBC1D16--BAIAP2^ENST00000321280.11" ; Parent "TBC1D16--BAIAP2^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "TBC1D16--BAIAP2^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "TBC1D16--BAIAP2^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D22A--TAFA5 HAVANA gene 26243 35283 . + . FI_gene_label "TAFA5^ENSG00000219438.9" ; ID "TBC1D22A--TAFA5^TAFA5^ENSG00000219438.9" ; exon_id "ENSE00001131477.4" ; exon_number 1 ; gene_id "TBC1D22A--TAFA5^TAFA5^ENSG00000219438.9" ; gene_name TAFA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150308.2" ; havana_transcript "OTTHUMT00000317503.2" ; hgnc_id "HGNC:21592" ; level 2 ; orig_coord_info "chr22,48489593,48489704,+" ; protein_id "ENSP00000336812.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TBC1D22A--TAFA5^ENST00000336769.9" ; transcript_name "TAFA5-201" ; transcript_support_level 4 ; transcript_type protein_coding
TBC1D22A--TAFA5 HAVANA mRNA 26243 35283 . + . FI_gene_label "TAFA5^ENSG00000219438.9" ; ID "TBC1D22A--TAFA5^ENST00000336769.9" ; Parent "TBC1D22A--TAFA5^TAFA5^ENSG00000219438.9" ; exon_id "ENSE00001131477.4" ; exon_number 1 ; gene_id "TBC1D22A--TAFA5^TAFA5^ENSG00000219438.9" ; gene_name TAFA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150308.2" ; havana_transcript "OTTHUMT00000317503.2" ; hgnc_id "HGNC:21592" ; level 2 ; orig_coord_info "chr22,48489593,48489704,+" ; protein_id "ENSP00000336812.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TBC1D22A--TAFA5^ENST00000336769.9" ; transcript_name "TAFA5-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
TBC1D22A--TAFA5 HAVANA gene 1034 23197 . + . FI_gene_label "TBC1D22A^ENSG00000054611.14" ; ID "TBC1D22A--TAFA5^TBC1D22A^ENSG00000054611.14" ; ccdsid "CCDS14078.1" ; exon_id "ENSE00001916547.2" ; exon_number 1 ; gene_id "TBC1D22A--TAFA5^TBC1D22A^ENSG00000054611.14" ; gene_name TBC1D22A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150332.4" ; havana_transcript "OTTHUMT00000317600.4" ; hgnc_id "HGNC:1309" ; level 2 ; orig_coord_info "chr22,46762787,46762848,+" ; protein_id "ENSP00000336724.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D22A--TAFA5^ENST00000337137.9" ; transcript_name "TBC1D22A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D22A--TAFA5 HAVANA mRNA 1034 23197 . + . FI_gene_label "TBC1D22A^ENSG00000054611.14" ; ID "TBC1D22A--TAFA5^ENST00000337137.9" ; Parent "TBC1D22A--TAFA5^TBC1D22A^ENSG00000054611.14" ; ccdsid "CCDS14078.1" ; exon_id "ENSE00001916547.2" ; exon_number 1 ; gene_id "TBC1D22A--TAFA5^TBC1D22A^ENSG00000054611.14" ; gene_name TBC1D22A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150332.4" ; havana_transcript "OTTHUMT00000317600.4" ; hgnc_id "HGNC:1309" ; level 2 ; orig_coord_info "chr22,46762787,46762848,+" ; protein_id "ENSP00000336724.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D22A--TAFA5^ENST00000337137.9" ; transcript_name "TBC1D22A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TESK2--SYCP1 HAVANA gene 15575 46004 . + . FI_gene_label "SYCP1^ENSG00000198765.12" ; ID "TESK2--SYCP1^SYCP1^ENSG00000198765.12" ; ccdsid "CCDS879.1" ; exon_id "ENSE00001450243.1" ; exon_number 2 ; gene_id "TESK2--SYCP1^SYCP1^ENSG00000198765.12" ; gene_name SYCP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012057.3" ; havana_transcript "OTTHUMT00000033387.1" ; hgnc_id "HGNC:11487" ; level 2 ; orig_coord_info "chr1,114855465,114855572,+" ; protein_id "ENSP00000358531.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TESK2--SYCP1^ENST00000369518.1" ; transcript_name "SYCP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TESK2--SYCP1 HAVANA mRNA 15575 46004 . + . FI_gene_label "SYCP1^ENSG00000198765.12" ; ID "TESK2--SYCP1^ENST00000369518.1" ; Parent "TESK2--SYCP1^SYCP1^ENSG00000198765.12" ; ccdsid "CCDS879.1" ; exon_id "ENSE00001450243.1" ; exon_number 2 ; gene_id "TESK2--SYCP1^SYCP1^ENSG00000198765.12" ; gene_name SYCP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012057.3" ; havana_transcript "OTTHUMT00000033387.1" ; hgnc_id "HGNC:11487" ; level 2 ; orig_coord_info "chr1,114855465,114855572,+" ; protein_id "ENSP00000358531.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "TESK2--SYCP1^ENST00000369518.1" ; transcript_name "SYCP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TESK2--SYCP1 HAVANA gene 2385 12304 . + . FI_gene_label "TESK2^ENSG00000070759.17" ; ID "TESK2--SYCP1^TESK2^ENSG00000070759.17" ; exon_id "ENSE00001456873.1" ; exon_number 1 ; gene_id "TESK2--SYCP1^TESK2^ENSG00000070759.17" ; gene_name TESK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007680.3" ; havana_transcript "OTTHUMT00000020524.1" ; hgnc_id "HGNC:11732" ; level 2 ; orig_coord_info "chr1,45457564,45457785,-" ; protein_id "ENSP00000361156.1" ; tag basic ; transcript_id "TESK2--SYCP1^ENST00000372084.5" ; transcript_name "TESK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TESK2--SYCP1 HAVANA mRNA 2385 12304 . + . FI_gene_label "TESK2^ENSG00000070759.17" ; ID "TESK2--SYCP1^ENST00000372084.5" ; Parent "TESK2--SYCP1^TESK2^ENSG00000070759.17" ; exon_id "ENSE00001456873.1" ; exon_number 1 ; gene_id "TESK2--SYCP1^TESK2^ENSG00000070759.17" ; gene_name TESK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007680.3" ; havana_transcript "OTTHUMT00000020524.1" ; hgnc_id "HGNC:11732" ; level 2 ; orig_coord_info "chr1,45457564,45457785,-" ; protein_id "ENSP00000361156.1" ; tag basic ; transcript_id "TESK2--SYCP1^ENST00000372084.5" ; transcript_name "TESK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AL669831.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^ENST00000326270.13" ; Parent "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTYH3--C7orf50 HAVANA gene 1001 16879 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "TTYH3--C7orf50^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "TTYH3--C7orf50^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--C7orf50^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTYH3--C7orf50 HAVANA mRNA 1001 16879 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "TTYH3--C7orf50^ENST00000258796.12" ; Parent "TTYH3--C7orf50^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "TTYH3--C7orf50^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--C7orf50^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTYH3--C7orf50 HAVANA gene 19883 32840 . + . FI_gene_label "C7orf50^ENSG00000146540.15" ; ID "TTYH3--C7orf50^C7orf50^ENSG00000146540.15" ; ccdsid "CCDS5320.1" ; exon_id "ENSE00001034888.1" ; exon_number 2 ; gene_id "TTYH3--C7orf50^C7orf50^ENSG00000146540.15" ; gene_name C7orf50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151477.7" ; havana_transcript "OTTHUMT00000322816.2" ; hgnc_id "HGNC:22421" ; level 2 ; orig_coord_info "chr7,1127257,1127385,-" ; protein_id "ENSP00000350011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "TTYH3--C7orf50^ENST00000357429.10" ; transcript_name "C7orf50-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTYH3--C7orf50 HAVANA mRNA 19883 32840 . + . FI_gene_label "C7orf50^ENSG00000146540.15" ; ID "TTYH3--C7orf50^ENST00000357429.10" ; Parent "TTYH3--C7orf50^C7orf50^ENSG00000146540.15" ; ccdsid "CCDS5320.1" ; exon_id "ENSE00001034888.1" ; exon_number 2 ; gene_id "TTYH3--C7orf50^C7orf50^ENSG00000146540.15" ; gene_name C7orf50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151477.7" ; havana_transcript "OTTHUMT00000322816.2" ; hgnc_id "HGNC:22421" ; level 2 ; orig_coord_info "chr7,1127257,1127385,-" ; protein_id "ENSP00000350011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "TTYH3--C7orf50^ENST00000357429.10" ; transcript_name "C7orf50-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTYH3--ELFN1 HAVANA gene 1001 16879 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "TTYH3--ELFN1^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "TTYH3--ELFN1^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--ELFN1^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTYH3--ELFN1 HAVANA mRNA 1001 16879 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "TTYH3--ELFN1^ENST00000258796.12" ; Parent "TTYH3--ELFN1^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "TTYH3--ELFN1^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--ELFN1^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTYH3--ELFN1 HAVANA gene 19880 25724 . + . FI_gene_label "ELFN1^ENSG00000225968.7" ; ID "TTYH3--ELFN1^ELFN1^ENSG00000225968.7" ; ccdsid "CCDS59046.1" ; exon_id "ENSE00003774632.1" ; exon_number 3 ; gene_id "TTYH3--ELFN1^ELFN1^ENSG00000225968.7" ; gene_name ELFN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151495.2" ; havana_transcript "OTTHUMT00000322893.2" ; hgnc_id "HGNC:33154" ; level 2 ; orig_coord_info "chr7,1744597,1747080,+" ; protein_id "ENSP00000456548.1" ; tag not_organism_supported basic appris_principal_1 CCDS ; transcript_id "TTYH3--ELFN1^ENST00000424383.4" ; transcript_name "ELFN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTYH3--ELFN1 HAVANA mRNA 19880 25724 . + . FI_gene_label "ELFN1^ENSG00000225968.7" ; ID "TTYH3--ELFN1^ENST00000424383.4" ; Parent "TTYH3--ELFN1^ELFN1^ENSG00000225968.7" ; ccdsid "CCDS59046.1" ; exon_id "ENSE00003774632.1" ; exon_number 3 ; gene_id "TTYH3--ELFN1^ELFN1^ENSG00000225968.7" ; gene_name ELFN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151495.2" ; havana_transcript "OTTHUMT00000322893.2" ; hgnc_id "HGNC:33154" ; level 2 ; orig_coord_info "chr7,1744597,1747080,+" ; protein_id "ENSP00000456548.1" ; tag not_organism_supported basic appris_principal_1 CCDS ; transcript_id "TTYH3--ELFN1^ENST00000424383.4" ; transcript_name "ELFN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTYH3--MAD1L1 HAVANA gene 1001 16879 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "TTYH3--MAD1L1^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "TTYH3--MAD1L1^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--MAD1L1^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTYH3--MAD1L1 HAVANA mRNA 1001 16879 . + . FI_gene_label "TTYH3^ENSG00000136295.15" ; ID "TTYH3--MAD1L1^ENST00000258796.12" ; Parent "TTYH3--MAD1L1^TTYH3^ENSG00000136295.15" ; ccdsid "CCDS34588.1" ; exon_id "ENSE00001035430.6" ; exon_number 1 ; gene_id "TTYH3--MAD1L1^TTYH3^ENSG00000136295.15" ; gene_name TTYH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152050.4" ; havana_transcript "OTTHUMT00000325082.3" ; hgnc_id "HGNC:22222" ; level 2 ; orig_coord_info "chr7,2632156,2632278,+" ; protein_id "ENSP00000258796.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--MAD1L1^ENST00000258796.12" ; transcript_name "TTYH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTYH3--MAD1L1 HAVANA gene 20178 58909 . + . FI_gene_label "MAD1L1^ENSG00000002822.16" ; ID "TTYH3--MAD1L1^MAD1L1^ENSG00000002822.16" ; ccdsid "CCDS43539.1" ; exon_id "ENSE00002228326.1" ; exon_number 3 ; gene_id "TTYH3--MAD1L1^MAD1L1^ENSG00000002822.16" ; gene_name MAD1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151493.7" ; hgnc_id "HGNC:6762" ; level 2 ; orig_coord_info "chr7,2229984,2230133,-" ; protein_id "ENSP00000265854.7" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--MAD1L1^ENST00000265854.12" ; transcript_name "MAD1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTYH3--MAD1L1 HAVANA mRNA 20178 58909 . + . FI_gene_label "MAD1L1^ENSG00000002822.16" ; ID "TTYH3--MAD1L1^ENST00000265854.12" ; Parent "TTYH3--MAD1L1^MAD1L1^ENSG00000002822.16" ; ccdsid "CCDS43539.1" ; exon_id "ENSE00002228326.1" ; exon_number 3 ; gene_id "TTYH3--MAD1L1^MAD1L1^ENSG00000002822.16" ; gene_name MAD1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151493.7" ; hgnc_id "HGNC:6762" ; level 2 ; orig_coord_info "chr7,2229984,2230133,-" ; protein_id "ENSP00000265854.7" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TTYH3--MAD1L1^ENST00000265854.12" ; transcript_name "MAD1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBAC2--LINC00358 HAVANA gene 1001 16945 . + . FI_gene_label "UBAC2^ENSG00000134882.16" ; ID "UBAC2--LINC00358^UBAC2^ENSG00000134882.16" ; exon_id "ENSE00001411015.2" ; exon_number 1 ; gene_id "UBAC2--LINC00358^UBAC2^ENSG00000134882.16" ; gene_name UBAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017267.5" ; havana_transcript "OTTHUMT00000045594.2" ; hgnc_id "HGNC:20486" ; level 2 ; orig_coord_info "chr13,99200909,99200939,+" ; protein_id "ENSP00000347928.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "UBAC2--LINC00358^ENST00000355700.9" ; transcript_name "UBAC2-201" ; transcript_support_level 3 ; transcript_type protein_coding
UBAC2--LINC00358 HAVANA mRNA 1001 16945 . + . FI_gene_label "UBAC2^ENSG00000134882.16" ; ID "UBAC2--LINC00358^ENST00000355700.9" ; Parent "UBAC2--LINC00358^UBAC2^ENSG00000134882.16" ; exon_id "ENSE00001411015.2" ; exon_number 1 ; gene_id "UBAC2--LINC00358^UBAC2^ENSG00000134882.16" ; gene_name UBAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017267.5" ; havana_transcript "OTTHUMT00000045594.2" ; hgnc_id "HGNC:20486" ; level 2 ; orig_coord_info "chr13,99200909,99200939,+" ; protein_id "ENSP00000347928.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "UBAC2--LINC00358^ENST00000355700.9" ; transcript_name "UBAC2-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
UBAC2--LINC01075 HAVANA gene 1001 16945 . + . FI_gene_label "UBAC2^ENSG00000134882.16" ; ID "UBAC2--LINC01075^UBAC2^ENSG00000134882.16" ; exon_id "ENSE00001411015.2" ; exon_number 1 ; gene_id "UBAC2--LINC01075^UBAC2^ENSG00000134882.16" ; gene_name UBAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017267.5" ; havana_transcript "OTTHUMT00000045594.2" ; hgnc_id "HGNC:20486" ; level 2 ; orig_coord_info "chr13,99200909,99200939,+" ; protein_id "ENSP00000347928.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "UBAC2--LINC01075^ENST00000355700.9" ; transcript_name "UBAC2-201" ; transcript_support_level 3 ; transcript_type protein_coding
UBAC2--LINC01075 HAVANA mRNA 1001 16945 . + . FI_gene_label "UBAC2^ENSG00000134882.16" ; ID "UBAC2--LINC01075^ENST00000355700.9" ; Parent "UBAC2--LINC01075^UBAC2^ENSG00000134882.16" ; exon_id "ENSE00001411015.2" ; exon_number 1 ; gene_id "UBAC2--LINC01075^UBAC2^ENSG00000134882.16" ; gene_name UBAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017267.5" ; havana_transcript "OTTHUMT00000045594.2" ; hgnc_id "HGNC:20486" ; level 2 ; orig_coord_info "chr13,99200909,99200939,+" ; protein_id "ENSP00000347928.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "UBAC2--LINC01075^ENST00000355700.9" ; transcript_name "UBAC2-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ZDHHC8--RTN4R HAVANA gene 18957 22936 . + . FI_gene_label "RTN4R^ENSG00000040608.14" ; ID "ZDHHC8--RTN4R^RTN4R^ENSG00000040608.14" ; ccdsid "CCDS13777.1" ; exon_id "ENSE00001358408.7" ; exon_number 1 ; gene_id "ZDHHC8--RTN4R^RTN4R^ENSG00000040608.14" ; gene_name RTN4R ; gene_type protein_coding ; havana_gene "OTTHUMG00000150572.3" ; havana_transcript "OTTHUMT00000318950.3" ; hgnc_id "HGNC:18601" ; level 2 ; orig_coord_info "chr22,20268071,20268092,-" ; protein_id "ENSP00000043402.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZDHHC8--RTN4R^ENST00000043402.8" ; transcript_name "RTN4R-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZDHHC8--RTN4R HAVANA mRNA 18957 22936 . + . FI_gene_label "RTN4R^ENSG00000040608.14" ; ID "ZDHHC8--RTN4R^ENST00000043402.8" ; Parent "ZDHHC8--RTN4R^RTN4R^ENSG00000040608.14" ; ccdsid "CCDS13777.1" ; exon_id "ENSE00001358408.7" ; exon_number 1 ; gene_id "ZDHHC8--RTN4R^RTN4R^ENSG00000040608.14" ; gene_name RTN4R ; gene_type protein_coding ; havana_gene "OTTHUMG00000150572.3" ; havana_transcript "OTTHUMT00000318950.3" ; hgnc_id "HGNC:18601" ; level 2 ; orig_coord_info "chr22,20268071,20268092,-" ; protein_id "ENSP00000043402.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZDHHC8--RTN4R^ENST00000043402.8" ; transcript_name "RTN4R-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZDHHC8--RTN4R HAVANA gene 2232 9897 . + . FI_gene_label "ZDHHC8^ENSG00000099904.16" ; ID "ZDHHC8--RTN4R^ZDHHC8^ENSG00000099904.16" ; exon_id "ENSE00001547524.1" ; exon_number 1 ; gene_id "ZDHHC8--RTN4R^ZDHHC8^ENSG00000099904.16" ; gene_name ZDHHC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150499.4" ; havana_transcript "OTTHUMT00000318566.2" ; hgnc_id "HGNC:18474" ; level 2 ; orig_coord_info "chr22,20131948,20132051,+" ; protein_id "ENSP00000317804.7" ; tag basic ; transcript_id "ZDHHC8--RTN4R^ENST00000320602.11" ; transcript_name "ZDHHC8-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZDHHC8--RTN4R HAVANA mRNA 2232 9897 . + . FI_gene_label "ZDHHC8^ENSG00000099904.16" ; ID "ZDHHC8--RTN4R^ENST00000320602.11" ; Parent "ZDHHC8--RTN4R^ZDHHC8^ENSG00000099904.16" ; exon_id "ENSE00001547524.1" ; exon_number 1 ; gene_id "ZDHHC8--RTN4R^ZDHHC8^ENSG00000099904.16" ; gene_name ZDHHC8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150499.4" ; havana_transcript "OTTHUMT00000318566.2" ; hgnc_id "HGNC:18474" ; level 2 ; orig_coord_info "chr22,20131948,20132051,+" ; protein_id "ENSP00000317804.7" ; tag basic ; transcript_id "ZDHHC8--RTN4R^ENST00000320602.11" ; transcript_name "ZDHHC8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AL359915.1--KPNA3 HAVANA gene 1613 7164 . + . FI_gene_label "AL359915.1^ENSG00000227712.2" ; ID "AL359915.1--KPNA3^AL359915.1^ENSG00000227712.2" ; exon_id "ENSE00001738829.1" ; exon_number 1 ; gene_id "AL359915.1--KPNA3^AL359915.1^ENSG00000227712.2" ; gene_name "AL359915.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012411.4" ; havana_transcript "OTTHUMT00000034533.1" ; level 2 ; orig_coord_info "chr1,119326963,119327303,-" ; transcript_id "AL359915.1--KPNA3^ENST00000457719.1" ; transcript_name "AL359915.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
AL359915.1--KPNA3 HAVANA RNA 1613 7164 . + . FI_gene_label "AL359915.1^ENSG00000227712.2" ; ID "AL359915.1--KPNA3^ENST00000457719.1" ; Parent "AL359915.1--KPNA3^AL359915.1^ENSG00000227712.2" ; exon_id "ENSE00001738829.1" ; exon_number 1 ; gene_id "AL359915.1--KPNA3^AL359915.1^ENSG00000227712.2" ; gene_name "AL359915.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000012411.4" ; havana_transcript "OTTHUMT00000034533.1" ; level 2 ; orig_coord_info "chr1,119326963,119327303,-" ; transcript_id "AL359915.1--KPNA3^ENST00000457719.1" ; transcript_name "AL359915.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
COL18A1--FAM207BP HAVANA gene 38568 39072 . + . FI_gene_label "FAM207BP^ENSG00000228797.2" ; ID "COL18A1--FAM207BP^FAM207BP^ENSG00000228797.2" ; exon_id "ENSE00001595812.1" ; exon_number 1 ; gene_id "COL18A1--FAM207BP^FAM207BP^ENSG00000228797.2" ; gene_name FAM207BP ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000016463.1" ; havana_transcript "OTTHUMT00000043986.1" ; hgnc_id "HGNC:39715" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,18697003,18697507,+" ; tag pseudo_consens basic ; transcript_id "COL18A1--FAM207BP^ENST00000447172.1" ; transcript_name "FAM207BP-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
COL18A1--FAM207BP HAVANA RNA 38568 39072 . + . FI_gene_label "FAM207BP^ENSG00000228797.2" ; ID "COL18A1--FAM207BP^ENST00000447172.1" ; Parent "COL18A1--FAM207BP^FAM207BP^ENSG00000228797.2" ; exon_id "ENSE00001595812.1" ; exon_number 1 ; gene_id "COL18A1--FAM207BP^FAM207BP^ENSG00000228797.2" ; gene_name FAM207BP ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000016463.1" ; havana_transcript "OTTHUMT00000043986.1" ; hgnc_id "HGNC:39715" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,18697003,18697507,+" ; tag pseudo_consens basic ; transcript_id "COL18A1--FAM207BP^ENST00000447172.1" ; transcript_name "FAM207BP-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DCUN1D2--AL353765.1 HAVANA gene 16404 16586 . + . FI_gene_label "AL353765.1^ENSG00000270856.1" ; ID "DCUN1D2--AL353765.1^AL353765.1^ENSG00000270856.1" ; exon_id "ENSE00003473855.1" ; exon_number 1 ; gene_id "DCUN1D2--AL353765.1^AL353765.1^ENSG00000270856.1" ; gene_name "AL353765.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184729.1" ; havana_transcript "OTTHUMT00000469126.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr13,61927090,61927272,-" ; tag basic ; transcript_id "DCUN1D2--AL353765.1^ENST00000605514.1" ; transcript_name "AL353765.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DCUN1D2--AL353765.1 HAVANA RNA 16404 16586 . + . FI_gene_label "AL353765.1^ENSG00000270856.1" ; ID "DCUN1D2--AL353765.1^ENST00000605514.1" ; Parent "DCUN1D2--AL353765.1^AL353765.1^ENSG00000270856.1" ; exon_id "ENSE00003473855.1" ; exon_number 1 ; gene_id "DCUN1D2--AL353765.1^AL353765.1^ENSG00000270856.1" ; gene_name "AL353765.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184729.1" ; havana_transcript "OTTHUMT00000469126.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr13,61927090,61927272,-" ; tag basic ; transcript_id "DCUN1D2--AL353765.1^ENST00000605514.1" ; transcript_name "AL353765.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DCUN1D2--RAC1P8 HAVANA gene 16404 16930 . + . FI_gene_label "RAC1P8^ENSG00000234033.1" ; ID "DCUN1D2--RAC1P8^RAC1P8^ENSG00000234033.1" ; exon_id "ENSE00001742879.1" ; exon_number 1 ; gene_id "DCUN1D2--RAC1P8^RAC1P8^ENSG00000234033.1" ; gene_name RAC1P8 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017013.1" ; havana_transcript "OTTHUMT00000045185.1" ; hgnc_id "HGNC:42005" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,61805150,61805676,+" ; tag pseudo_consens basic ; transcript_id "DCUN1D2--RAC1P8^ENST00000427086.1" ; transcript_name "RAC1P8-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DCUN1D2--RAC1P8 HAVANA RNA 16404 16930 . + . FI_gene_label "RAC1P8^ENSG00000234033.1" ; ID "DCUN1D2--RAC1P8^ENST00000427086.1" ; Parent "DCUN1D2--RAC1P8^RAC1P8^ENSG00000234033.1" ; exon_id "ENSE00001742879.1" ; exon_number 1 ; gene_id "DCUN1D2--RAC1P8^RAC1P8^ENSG00000234033.1" ; gene_name RAC1P8 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017013.1" ; havana_transcript "OTTHUMT00000045185.1" ; hgnc_id "HGNC:42005" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,61805150,61805676,+" ; tag pseudo_consens basic ; transcript_id "DCUN1D2--RAC1P8^ENST00000427086.1" ; transcript_name "RAC1P8-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DZIP1--DLEU1 HAVANA gene 99062 104691 . + . FI_gene_label "DLEU1^ENSG00000176124.15" ; ID "DZIP1--DLEU1^DLEU1^ENSG00000176124.15" ; exon_id "ENSE00001684348.2" ; exon_number 1 ; gene_id "DZIP1--DLEU1^DLEU1^ENSG00000176124.15" ; gene_name DLEU1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000192280.7" ; havana_transcript "OTTHUMT00000045004.4" ; hgnc_id "HGNC:13747" ; level 2 ; orig_coord_info "chr13,50807855,50807986,+" ; tag basic ; transcript_id "DZIP1--DLEU1^ENST00000413510.4" ; transcript_name "DLEU1-201" ; transcript_support_level 1 ; transcript_type lncRNA
DZIP1--DLEU1 HAVANA RNA 99062 104691 . + . FI_gene_label "DLEU1^ENSG00000176124.15" ; ID "DZIP1--DLEU1^ENST00000413510.4" ; Parent "DZIP1--DLEU1^DLEU1^ENSG00000176124.15" ; exon_id "ENSE00001684348.2" ; exon_number 1 ; gene_id "DZIP1--DLEU1^DLEU1^ENSG00000176124.15" ; gene_name DLEU1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000192280.7" ; havana_transcript "OTTHUMT00000045004.4" ; hgnc_id "HGNC:13747" ; level 2 ; orig_coord_info "chr13,50807855,50807986,+" ; tag basic ; transcript_id "DZIP1--DLEU1^ENST00000413510.4" ; transcript_name "DLEU1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
GTF2F2--AL354994.1 HAVANA gene 16609 18802 . + . FI_gene_label "AL354994.1^ENSG00000232252.1" ; ID "GTF2F2--AL354994.1^AL354994.1^ENSG00000232252.1" ; exon_id "ENSE00001734887.1" ; exon_number 1 ; gene_id "GTF2F2--AL354994.1^AL354994.1^ENSG00000232252.1" ; gene_name "AL354994.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017159.1" ; havana_transcript "OTTHUMT00000045406.1" ; level 2 ; orig_coord_info "chr13,86060813,86060860,+" ; tag basic ; transcript_id "GTF2F2--AL354994.1^ENST00000445967.1" ; transcript_name "AL354994.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
GTF2F2--AL354994.1 HAVANA RNA 16609 18802 . + . FI_gene_label "AL354994.1^ENSG00000232252.1" ; ID "GTF2F2--AL354994.1^ENST00000445967.1" ; Parent "GTF2F2--AL354994.1^AL354994.1^ENSG00000232252.1" ; exon_id "ENSE00001734887.1" ; exon_number 1 ; gene_id "GTF2F2--AL354994.1^AL354994.1^ENSG00000232252.1" ; gene_name "AL354994.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017159.1" ; havana_transcript "OTTHUMT00000045406.1" ; level 2 ; orig_coord_info "chr13,86060813,86060860,+" ; tag basic ; transcript_id "GTF2F2--AL354994.1^ENST00000445967.1" ; transcript_name "AL354994.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
IGFL1P2--HIF3A HAVANA gene 1001 1439 . + . FI_gene_label "IGFL1P2^ENSG00000268238.1" ; ID "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; exon_id "ENSE00003064899.1" ; exon_number 1 ; gene_id "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; gene_name IGFL1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000182502.1" ; havana_transcript "OTTHUMT00000461725.1" ; hgnc_id "HGNC:32957" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,46260801,46260858,-" ; tag basic ; transcript_id "IGFL1P2--HIF3A^ENST00000593820.1" ; transcript_name "IGFL1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
IGFL1P2--HIF3A HAVANA RNA 1001 1439 . + . FI_gene_label "IGFL1P2^ENSG00000268238.1" ; ID "IGFL1P2--HIF3A^ENST00000593820.1" ; Parent "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; exon_id "ENSE00003064899.1" ; exon_number 1 ; gene_id "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; gene_name IGFL1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000182502.1" ; havana_transcript "OTTHUMT00000461725.1" ; hgnc_id "HGNC:32957" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,46260801,46260858,-" ; tag basic ; transcript_id "IGFL1P2--HIF3A^ENST00000593820.1" ; transcript_name "IGFL1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
KPNA3--LGMNP1 HAVANA gene 18881 20180 . + . FI_gene_label "LGMNP1^ENSG00000214269.3" ; ID "KPNA3--LGMNP1^LGMNP1^ENSG00000214269.3" ; exon_id "ENSE00001749917.1" ; exon_number 1 ; gene_id "KPNA3--LGMNP1^LGMNP1^ENSG00000214269.3" ; gene_name LGMNP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017029.1" ; havana_transcript "OTTHUMT00000045203.1" ; hgnc_id "HGNC:23079" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,64958097,64959396,-" ; tag pseudo_consens basic ; transcript_id "KPNA3--LGMNP1^ENST00000441282.1" ; transcript_name "LGMNP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
KPNA3--LGMNP1 HAVANA RNA 18881 20180 . + . FI_gene_label "LGMNP1^ENSG00000214269.3" ; ID "KPNA3--LGMNP1^ENST00000441282.1" ; Parent "KPNA3--LGMNP1^LGMNP1^ENSG00000214269.3" ; exon_id "ENSE00001749917.1" ; exon_number 1 ; gene_id "KPNA3--LGMNP1^LGMNP1^ENSG00000214269.3" ; gene_name LGMNP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017029.1" ; havana_transcript "OTTHUMT00000045203.1" ; hgnc_id "HGNC:23079" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,64958097,64959396,-" ; tag pseudo_consens basic ; transcript_id "KPNA3--LGMNP1^ENST00000441282.1" ; transcript_name "LGMNP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
KPNA3--STARP1 HAVANA gene 18881 19979 . + . FI_gene_label "STARP1^ENSG00000214266.2" ; ID "KPNA3--STARP1^STARP1^ENSG00000214266.2" ; exon_id "ENSE00001791912.1" ; exon_number 1 ; gene_id "KPNA3--STARP1^STARP1^ENSG00000214266.2" ; gene_name STARP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017030.1" ; havana_transcript "OTTHUMT00000045204.1" ; hgnc_id "HGNC:11360" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,65310752,65310953,-" ; tag pseudo_consens basic ; transcript_id "KPNA3--STARP1^ENST00000397973.2" ; transcript_name "STARP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
KPNA3--STARP1 HAVANA RNA 18881 19979 . + . FI_gene_label "STARP1^ENSG00000214266.2" ; ID "KPNA3--STARP1^ENST00000397973.2" ; Parent "KPNA3--STARP1^STARP1^ENSG00000214266.2" ; exon_id "ENSE00001791912.1" ; exon_number 1 ; gene_id "KPNA3--STARP1^STARP1^ENSG00000214266.2" ; gene_name STARP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017030.1" ; havana_transcript "OTTHUMT00000045204.1" ; hgnc_id "HGNC:11360" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,65310752,65310953,-" ; tag pseudo_consens basic ; transcript_id "KPNA3--STARP1^ENST00000397973.2" ; transcript_name "STARP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MPHOSPH8--AL157944.1 HAVANA gene 35357 38794 . + . FI_gene_label "AL157944.1^ENSG00000233290.3" ; ID "MPHOSPH8--AL157944.1^AL157944.1^ENSG00000233290.3" ; exon_id "ENSE00003833379.1" ; exon_number 1 ; gene_id "MPHOSPH8--AL157944.1^AL157944.1^ENSG00000233290.3" ; gene_name "AL157944.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000009845.4" ; havana_transcript "OTTHUMT00000027201.3" ; level 2 ; orig_coord_info "chr1,82279396,82279613,-" ; tag TAGENE ; transcript_id "MPHOSPH8--AL157944.1^ENST00000420549.3" ; transcript_name "AL157944.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
MPHOSPH8--AL157944.1 HAVANA RNA 35357 38794 . + . FI_gene_label "AL157944.1^ENSG00000233290.3" ; ID "MPHOSPH8--AL157944.1^ENST00000420549.3" ; Parent "MPHOSPH8--AL157944.1^AL157944.1^ENSG00000233290.3" ; exon_id "ENSE00003833379.1" ; exon_number 1 ; gene_id "MPHOSPH8--AL157944.1^AL157944.1^ENSG00000233290.3" ; gene_name "AL157944.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000009845.4" ; havana_transcript "OTTHUMT00000027201.3" ; level 2 ; orig_coord_info "chr1,82279396,82279613,-" ; tag TAGENE ; transcript_id "MPHOSPH8--AL157944.1^ENST00000420549.3" ; transcript_name "AL157944.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
MYO10--AC092335.1 HAVANA gene 55919 58984 . + . FI_gene_label "AC092335.1^ENSG00000250448.1" ; ID "MYO10--AC092335.1^AC092335.1^ENSG00000250448.1" ; exon_id "ENSE00002056547.1" ; exon_number 1 ; gene_id "MYO10--AC092335.1^AC092335.1^ENSG00000250448.1" ; gene_name "AC092335.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000161785.1" ; havana_transcript "OTTHUMT00000366087.1" ; level 2 ; orig_coord_info "chr5,16180238,16180440,+" ; tag basic ; transcript_id "MYO10--AC092335.1^ENST00000509037.1" ; transcript_name "AC092335.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
MYO10--AC092335.1 HAVANA RNA 55919 58984 . + . FI_gene_label "AC092335.1^ENSG00000250448.1" ; ID "MYO10--AC092335.1^ENST00000509037.1" ; Parent "MYO10--AC092335.1^AC092335.1^ENSG00000250448.1" ; exon_id "ENSE00002056547.1" ; exon_number 1 ; gene_id "MYO10--AC092335.1^AC092335.1^ENSG00000250448.1" ; gene_name "AC092335.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000161785.1" ; havana_transcript "OTTHUMT00000366087.1" ; level 2 ; orig_coord_info "chr5,16180238,16180440,+" ; tag basic ; transcript_id "MYO10--AC092335.1^ENST00000509037.1" ; transcript_name "AC092335.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
RSBN1--FAR1P1 HAVANA gene 16717 17650 . + . FI_gene_label "FAR1P1^ENSG00000235879.1" ; ID "RSBN1--FAR1P1^FAR1P1^ENSG00000235879.1" ; exon_id "ENSE00001734281.1" ; exon_number 1 ; gene_id "RSBN1--FAR1P1^FAR1P1^ENSG00000235879.1" ; gene_name FAR1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017182.1" ; havana_transcript "OTTHUMT00000045434.1" ; hgnc_id "HGNC:39675" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,90170866,90171799,+" ; tag pseudo_consens basic ; transcript_id "RSBN1--FAR1P1^ENST00000427163.1" ; transcript_name "FAR1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
RSBN1--FAR1P1 HAVANA RNA 16717 17650 . + . FI_gene_label "FAR1P1^ENSG00000235879.1" ; ID "RSBN1--FAR1P1^ENST00000427163.1" ; Parent "RSBN1--FAR1P1^FAR1P1^ENSG00000235879.1" ; exon_id "ENSE00001734281.1" ; exon_number 1 ; gene_id "RSBN1--FAR1P1^FAR1P1^ENSG00000235879.1" ; gene_name FAR1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017182.1" ; havana_transcript "OTTHUMT00000045434.1" ; hgnc_id "HGNC:39675" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,90170866,90171799,+" ; tag pseudo_consens basic ; transcript_id "RSBN1--FAR1P1^ENST00000427163.1" ; transcript_name "FAR1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
RSBN1--KRT18P27 HAVANA gene 16717 18015 . + . FI_gene_label "KRT18P27^ENSG00000224419.1" ; ID "RSBN1--KRT18P27^KRT18P27^ENSG00000224419.1" ; exon_id "ENSE00001716607.1" ; exon_number 1 ; gene_id "RSBN1--KRT18P27^KRT18P27^ENSG00000224419.1" ; gene_name KRT18P27 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017183.1" ; havana_transcript "OTTHUMT00000045435.1" ; hgnc_id "HGNC:33396" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,90230384,90231682,+" ; tag pseudo_consens basic ; transcript_id "RSBN1--KRT18P27^ENST00000427733.1" ; transcript_name "KRT18P27-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
RSBN1--KRT18P27 HAVANA RNA 16717 18015 . + . FI_gene_label "KRT18P27^ENSG00000224419.1" ; ID "RSBN1--KRT18P27^ENST00000427733.1" ; Parent "RSBN1--KRT18P27^KRT18P27^ENSG00000224419.1" ; exon_id "ENSE00001716607.1" ; exon_number 1 ; gene_id "RSBN1--KRT18P27^KRT18P27^ENSG00000224419.1" ; gene_name KRT18P27 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017183.1" ; havana_transcript "OTTHUMT00000045435.1" ; hgnc_id "HGNC:33396" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,90230384,90231682,+" ; tag pseudo_consens basic ; transcript_id "RSBN1--KRT18P27^ENST00000427733.1" ; transcript_name "KRT18P27-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
TLK2--AL669831.1 HAVANA RNA 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^ENST00000428504.2" ; Parent "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
UBAC2--LINC00358 HAVANA gene 21159 23434 . + . FI_gene_label "LINC00358^ENSG00000229578.3" ; ID "UBAC2--LINC00358^LINC00358^ENSG00000229578.3" ; exon_id "ENSE00001700015.1" ; exon_number 1 ; gene_id "UBAC2--LINC00358^LINC00358^ENSG00000229578.3" ; gene_name LINC00358 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017014.3" ; havana_transcript "OTTHUMT00000045186.2" ; hgnc_id "HGNC:42678" ; level 1 ; orig_coord_info "chr13,62029259,62029548,-" ; tag basic exp_conf ; transcript_id "UBAC2--LINC00358^ENST00000432697.2" ; transcript_name "LINC00358-201" ; transcript_support_level 1 ; transcript_type lncRNA
UBAC2--LINC00358 HAVANA RNA 21159 23434 . + . FI_gene_label "LINC00358^ENSG00000229578.3" ; ID "UBAC2--LINC00358^ENST00000432697.2" ; Parent "UBAC2--LINC00358^LINC00358^ENSG00000229578.3" ; exon_id "ENSE00001700015.1" ; exon_number 1 ; gene_id "UBAC2--LINC00358^LINC00358^ENSG00000229578.3" ; gene_name LINC00358 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017014.3" ; havana_transcript "OTTHUMT00000045186.2" ; hgnc_id "HGNC:42678" ; level 1 ; orig_coord_info "chr13,62029259,62029548,-" ; tag basic exp_conf ; transcript_id "UBAC2--LINC00358^ENST00000432697.2" ; transcript_name "LINC00358-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
UBAC2--LINC01075 HAVANA gene 21135 24504 . + . FI_gene_label "LINC01075^ENSG00000230142.2" ; ID "UBAC2--LINC01075^LINC01075^ENSG00000230142.2" ; exon_id "ENSE00003752080.1" ; exon_number 1 ; gene_id "UBAC2--LINC01075^LINC01075^ENSG00000230142.2" ; gene_name LINC01075 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017017.2" ; havana_transcript "OTTHUMT00000045189.2" ; hgnc_id "HGNC:49118" ; level 2 ; orig_coord_info "chr13,62212577,62212629,+" ; tag basic ; transcript_id "UBAC2--LINC01075^ENST00000455977.2" ; transcript_name "LINC01075-201" ; transcript_support_level 3 ; transcript_type lncRNA
UBAC2--LINC01075 HAVANA RNA 21135 24504 . + . FI_gene_label "LINC01075^ENSG00000230142.2" ; ID "UBAC2--LINC01075^ENST00000455977.2" ; Parent "UBAC2--LINC01075^LINC01075^ENSG00000230142.2" ; exon_id "ENSE00003752080.1" ; exon_number 1 ; gene_id "UBAC2--LINC01075^LINC01075^ENSG00000230142.2" ; gene_name LINC01075 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017017.2" ; havana_transcript "OTTHUMT00000045189.2" ; hgnc_id "HGNC:49118" ; level 2 ; orig_coord_info "chr13,62212577,62212629,+" ; tag basic ; transcript_id "UBAC2--LINC01075^ENST00000455977.2" ; transcript_name "LINC01075-201" ; transcript_support_level 3 ; transcript_type lncRNA
1497 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
2337 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 1 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 99 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed